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The cryptic origins of evolutionary novelty: 1,000-fold-faster trophic diversification rates without increased ecological opportunity or hybrid swarm

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Changes in growth rates of oral jaw elements produce evolutionary novelty in bahamian pupfish
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Acquisition of Energy by Teleosts: Adaptive Mechanisms and Evolutionary Patterns
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Scale-eating in characoids and other fishes
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Scale-eating in characoids and other fishes
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Accelerated Rates of Floral Evolution at the Upper Size Limit for Flowers
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Novelty and Innovation in the History of Life
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The genomics of organismal diversification illuminated by adaptive radiations
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Hybridization and adaptive radiation
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Ecological explanations for (incomplete) speciation
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Gene tree discordance, phylogenetic inference and the multispecies coalescent
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Genetic differentiation and reproductive isolation in a Cyprinodon fish species flock from Laguna Chichancanab, Mexico
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Key innovations and the ecology of macroevolution
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Was the Ediacaran–Cambrian radiation a unique evolutionary event?
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Adaptive radiation in a heterogeneous environment
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Analysis of an evolutionary species–area relationship
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Evidence for ecology's role in speciation
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Ecological constraints on diversification in a model adaptive radiation
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Pollinator shifts drive increasingly long nectar spurs in columbine flowers
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Reconstructing Indian population history
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Adaptive radiation of multituberculate mammals before the extinction of dinosaurs
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Ecological opportunity and sexual selection together predict adaptive radiation
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Genomic analysis of a key innovation in an experimental Escherichia coli population
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Ancient human genomes suggest three ancestral populations for present-day Europeans
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The genomic substrate for adaptive radiation in African cichlid fish
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Evolution of Darwin’s finches and their beaks revealed by genome sequencing
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Ancient gene flow from early modern humans into Eastern Neanderthals
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Quorum sensing triggers the stochastic escape of individual cells from Pseudomonas putida biofilms
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Fast gapped-read alignment with Bowtie 2
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Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
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Genomics and the origin of species
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Speciation and phylogeography of Hawaiian terrestrial arthropods
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Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
inferredcites →https://doi.org/10.1073/pnas.0811136106openalex-snapshot
Evidence for a Cenozoic radiation of ferns in an angiosperm-dominated canopy
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Conservatism and diversification of plant functional traits: Evolutionary rates versus phylogenetic signal
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Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
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Phylogenies and the Comparative Method
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Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data
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Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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Predictable Patterns of Disruptive Selection in Stickleback in Postglacial Lakes
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Ecological Opportunity in Adaptive Radiation of Galápagos Endemic Land Snails
inferredcites →https://doi.org/10.1086/650369openalex-snapshot
Speciation Has a Spatial Scale That Depends on Levels of Gene Flow
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Character Displacement and the Origins of Diversity
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Weak Disruptive Selection and Incomplete Phenotypic Divergence in Two Classic Examples of Sympatric Speciation: Cameroon Crater Lake Cichlids
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Species Diversity Is Dynamic and Unbounded at Local and Continental Scales
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Ecological Speciation
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pcaMethods—a bioconductor package providing PCA methods for incomplete data
inferredcites →https://doi.org/10.1093/bioinformatics/btm538openalex-snapshot
GEIGER: investigating evolutionary radiations
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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
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Predicting Evolution with Generalized Models of Divergent Selection: A Case Study with Poeciliid Fish
inferredcites →https://doi.org/10.1093/molbev/msp274openalex-snapshot
Bayesian Inference of Species Trees from Multilocus Data
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Testing for Ancient Admixture between Closely Related Populations
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Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
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The Ecology of Adaptive Radiation
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A Novel Bayesian Method for Inferring and Interpreting the Dynamics of Adaptive Landscapes from Phylogenetic Comparative Data
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African cichlid fish: a model system in adaptive radiation research
inferredcites →https://doi.org/10.1098/rspb.2015.1666openalex-snapshot
Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers
inferredcites →https://doi.org/10.1098/rspb.2015.2334openalex-snapshot
Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth
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Creating the CIPRES Science Gateway for inference of large phylogenetic trees
inferredcites →https://doi.org/10.1111/ele.12260openalex-snapshot
Cichlid species‐area relationships are shaped by adaptive radiations that scale with area
inferredcites →https://doi.org/10.1111/evo.12090openalex-snapshot
STRONG ASSORTATIVE MATING BY DIET, COLOR, SIZE, AND MORPHOLOGY BUT LIMITED PROGRESS TOWARD SYMPATRIC SPECIATION IN A CLASSIC EXAMPLE: CAMEROON CRATER LAKE CICHLIDS
inferredcites →https://doi.org/10.1111/evo.12932openalex-snapshot
Context dependence in complex adaptive landscapes: frequency and trait-dependent selection surfaces within an adaptive radiation of Caribbean pupfishes
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PHYLOGENETIC RELATIONSHIPS AND MORPHOLOGICAL DIVERSITY IN DARWIN'S FINCHES AND THEIR RELATIVES
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb01769.xopenalex-snapshot
RAPID EVOLUTIONARY ESCAPE BY LARGE POPULATIONS FROM LOCAL FITNESS PEAKS IS LIKELY IN NATURE
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THE ORIGIN AND DIVERSIFICATION OF GALAPAGOS MOCKINGBIRDS
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TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD
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Trophic differentiation in the phylogenetically young Cyprinodon species flock (Cyprinodontidae, Teleostei) from Laguna Chichancanab (Mexico)
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Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02004.xopenalex-snapshot
Comparative rates of lower jaw diversification in cichlid adaptive radiations
inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02014.xopenalex-snapshot
Environmental variation, hybridization, and phenotypic diversification in Cuatro Ciénegas pupfishes
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot
Hybridization and speciation
inferredcites →https://doi.org/10.1111/j.1461-0248.2004.00715.xopenalex-snapshot
Ecological speciation
inferredcites →https://doi.org/10.1111/j.1461-0248.2011.01607.xopenalex-snapshot
Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes
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ECOLOGICAL SPECIATION IN GAMBUSIA FISHES
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A COMPARATIVE METHOD FOR STUDYING ADAPTATION TO A RANDOMLY EVOLVING ENVIRONMENT
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SIZE-CORRECTION AND PRINCIPAL COMPONENTS FOR INTERSPECIFIC COMPARATIVE STUDIES
inferredcites →https://doi.org/10.1111/j.1558-5646.2010.01025.xopenalex-snapshot
EARLY BURSTS OF BODY SIZE AND SHAPE EVOLUTION ARE RARE IN COMPARATIVE DATA
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01294.xopenalex-snapshot
TROPHIC NOVELTY IS LINKED TO EXCEPTIONAL RATES OF MORPHOLOGICAL DIVERSIFICATION IN TWO ADAPTIVE RADIATIONS OF CYPRINODON PUPFISH
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01401.xopenalex-snapshot
A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES
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The impact of invasive fish on an endemic Cyprinodon species flock (Teleostei) from Laguna Chichancanab, Yucatan, Mexico
inferredcites →https://doi.org/10.1111/jeb.12038openalex-snapshot
Hybridization may rarely promote speciation
inferredcites →https://doi.org/10.1111/jeb.12112openalex-snapshot
Do habitat shifts drive diversification in teleost fishes? An example from the pufferfishes (Tetraodontidae)
inferredcites →https://doi.org/10.1111/jfb.12031openalex-snapshot
Phylogenetic and phylogeographic analysis of the genus Orestias (Teleostei: Cyprinodontidae) in the southern Chilean Altiplano: the relevance of ancient and recent divergence processes in speciation
inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot
Stacks: an analysis tool set for population genomics
inferredcites →https://doi.org/10.1111/mec.12658openalex-snapshot
Novel trophic niches drive variable progress towards ecological speciation within an adaptive radiation of pupfishes
inferredcites →https://doi.org/10.1111/mec.12965openalex-snapshot
Demystifying the RAD fad
inferredcites →https://doi.org/10.1111/mec.13405openalex-snapshot
Hybrid ‘superswarm’ leads to rapid divergence and establishment of populations during a biological invasion
inferredcites →https://doi.org/10.1111/nyas.12747openalex-snapshot
Estimating phylogenetic trees from genome‐scale data
inferredcites →https://doi.org/10.1126/science.1086949openalex-snapshot
Major Ecological Transitions in Wild Sunflowers Facilitated by Hybridization
inferredcites →https://doi.org/10.1126/science.1091875openalex-snapshot
Community Assembly Through Adaptive Radiation in Hawaiian Spiders
inferredcites →https://doi.org/10.1126/science.1157966openalex-snapshot
Adaptive Radiation: Contrasting Theory with Data
inferredcites →https://doi.org/10.1126/science.1227710openalex-snapshot
Multiple Fitness Peaks on the Adaptive Landscape Drive Adaptive Radiation in the Wild
inferredcites →https://doi.org/10.1126/science.aac9927openalex-snapshot
Genomic islands of speciation separate cichlid ecomorphs in an East African crater lake
inferredcites →https://doi.org/10.1139/f09-023openalex-snapshot
High niche overlap between two successfully coexisting pairs of Lake Malawi cichlid fishes
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/1471-2148-9-255openalex-snapshot
Does evolutionary innovation in pharyngeal jaws lead to rapid lineage diversification in labrid fishes?
inferredcites →https://doi.org/10.1242/jeb.01938openalex-snapshot
Functional morphology of feeding in the scale-eating specialistCatoprion mento
inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1371/journal.pgen.1000686openalex-snapshot
A Genealogical Interpretation of Principal Components Analysis
inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot
Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1005041openalex-snapshot
Reproductive Isolation of Hybrid Populations Driven by Genetic Incompatibilities
inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
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On the Measurement of Ecological Novelty: Scale-Eating Pupfish Are Separated by 168 my from Other Scale-Eating Fishes
inferredcites →https://doi.org/10.1525/9780520954045openalex-snapshot
Evolution's Wedge
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Lizards in an Evolutionary TreeEcology and Adaptive Radiation of Anoles
inferredcites →https://doi.org/10.1534/g3.111.000240openalex-snapshot
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
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USING STABLE ISOTOPES TO ESTIMATE TROPHIC POSITION: MODELS, METHODS, AND ASSUMPTIONS
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Alternative Stable States in Ecology
inferredcites →https://doi.org/10.2307/1444040openalex-snapshot
A Remarkable Species Flock of Pupfishes, Genus Cyprinodon, from Yucatán, México
inferredcites →https://doi.org/10.2307/1445034openalex-snapshot
Cyprinodon verecundus, n. sp., a Fifth Species of Pupfish from Laguna Chichancanab
inferredcites →https://doi.org/10.2307/3543712openalex-snapshot
A Comparison of Three Diversity Indices Based on Their Components of Richness and Evenness
inferredcites →https://doi.org/10.2307/3671783openalex-snapshot
Food Habits within the Laguna Chichancanab Cyprinodon (Pisces: Cyprinodontidae) Species Flock
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Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach
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Enzyme Clearing of Alcian Blue Stained Whole Small Vertebrates for Demonstration of Cartilage
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R: A Language and Environment for Statistical Computing
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A Remarkable Species Flock ofCyprinodonPupfishes Endemic to San Salvador Island, Bahamas
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Lizards in an evolutionary tree: ecology and adaptive radiation of anoles
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Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1098/rspb.2023.1686openalex-snapshot
Jaw size variation is associated with a novel craniofacial function for galanin receptor 2 in an adaptive radiation of pupfishes
inferred← citeshttps://doi.org/10.1101/2020.03.12.988774openalex-snapshot
Major stages of vertebrate adaptive radiation are assembled from a disparate spatiotemporal landscape
inferred← citeshttps://doi.org/10.1101/227439openalex-snapshot
Oxford Nanopore sequencing in a research-based undergraduate course
inferred← citeshttps://doi.org/10.1101/756908openalex-snapshot
Field manipulation of competition among hybrids reveals dynamic and highly stable features of a complex fitness landscape driving adaptive radiation
inferred← citeshttps://doi.org/10.1242/jeb.217570openalex-snapshot
Rapid adaptive evolution of scale-eating kinematics to a novel ecological niche
inferred← citeshttps://doi.org/10.1371/journal.pgen.1006919openalex-snapshot
Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes
inferred← citeshttps://doi.org/10.7287/peerj.11997v0.1/reviews/1openalex-snapshot
Peer Review #1 of "A variable-rate quantitative trait evolution model using penalized-likelihood (v0.1)"
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