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Oxford Nanopore sequencing in a research-based undergraduate course

https://doi.org/10.1101/227439
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.ygeno.2008.07.001openalex-snapshot
Applications of next-generation sequencing technologies in functional genomics
inferredcites →https://doi.org/10.1038/nature16996openalex-snapshot
Real-time, portable genome sequencing for Ebola surveillance
inferredcites →https://doi.org/10.1038/nbt.1495openalex-snapshot
The potential and challenges of nanopore sequencing
inferredcites →https://doi.org/10.1038/nbt.3423openalex-snapshot
Three decades of nanopore sequencing
inferredcites →https://doi.org/10.1038/nbt1486openalex-snapshot
Next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nnano.2009.12openalex-snapshot
Continuous base identification for single-molecule nanopore DNA sequencing
inferredcites →https://doi.org/10.1038/nrg.2016.49openalex-snapshot
Coming of age: ten years of next-generation sequencing technologies
inferredcites →https://doi.org/10.1073/pnas.97.3.1079openalex-snapshot
Rapid nanopore discrimination between single polynucleotide molecules
inferredcites →https://doi.org/10.1093/bioinformatics/btu555openalex-snapshot
Poretools: a toolkit for analyzing nanopore sequence data
inferredcites →https://doi.org/10.1093/jac/dkw397openalex-snapshot
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
inferredcites →https://doi.org/10.1093/molbev/msw286openalex-snapshot
Novel candidate genes underlying extreme trophic specialization in Caribbean pupfishes
inferredcites →https://doi.org/10.1101/048603openalex-snapshot
Third-generation sequencing and the future of genomics
inferredcites →https://doi.org/10.1101/053140openalex-snapshot
The cryptic origins of evolutionary novelty: 1,000-fold-faster trophic diversification rates without increased ecological opportunity or hybrid swarm
inferredcites →https://doi.org/10.1111/evo.12932openalex-snapshot
Context dependence in complex adaptive landscapes: frequency and trait-dependent selection surfaces within an adaptive radiation of Caribbean pupfishes
inferredcites →https://doi.org/10.1111/evo.13046openalex-snapshot
The cryptic origins of evolutionary novelty: 1000-fold faster trophic diversification rates without increased ecological opportunity or hybrid swarm
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01294.xopenalex-snapshot
TROPHIC NOVELTY IS LINKED TO EXCEPTIONAL RATES OF MORPHOLOGICAL DIVERSIFICATION IN TWO ADAPTIVE RADIATIONS OF CYPRINODON PUPFISH
inferredcites →https://doi.org/10.1111/mec.13935openalex-snapshot
The genetic architecture of novel trophic specialists: larger effect sizes are associated with exceptional oral jaw diversification in a pupfish adaptive radiation
inferredcites →https://doi.org/10.1186/s13059-016-1103-0openalex-snapshot
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
inferredcites →https://doi.org/10.1371/journal.pgen.1006919openalex-snapshot
Adaptive introgression from distant Caribbean islands contributed to the diversification of a microendemic adaptive radiation of trophic specialist pupfishes
inferredcites →https://doi.org/10.1371/journal.pone.0071164openalex-snapshot
On the Measurement of Ecological Novelty: Scale-Eating Pupfish Are Separated by 168 my from Other Scale-Eating Fishes
inferredcites →https://doi.org/10.3374/014.054.0201openalex-snapshot
A Remarkable Species Flock ofCyprinodonPupfishes Endemic to San Salvador Island, Bahamas
inferredcites →https://doi.org/10.7554/elife.14258openalex-snapshot
Using mobile sequencers in an academic classroom

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s43683-025-00196-4openalex-snapshot
Bridging Biology and Data Science: Nanopore Sequencing-Based Lab Module for Biocomputational Engineering Students
inferred← citeshttps://doi.org/10.1093/gigascience/giaa067openalex-snapshot
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American Fundulus killifish
inferred← citeshttps://doi.org/10.1093/gigascience/giy033openalex-snapshot
Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building
inferred← citeshttps://doi.org/10.1093/jxb/erab006openalex-snapshot
Improved Spirodela polyrhiza genome and proteomic analyses reveal a conserved chromosomal structure with high abundance of chloroplastic proteins favoring energy production
inferred← citeshttps://doi.org/10.1101/2024.07.05.602297openalex-snapshot
The West African lungfish secretes a living cocoon during aestivation with uncertain antimicrobial function
inferred← citeshttps://doi.org/10.1101/581728openalex-snapshot
Genomics in the jungle: using portable sequencing as a teaching tool in field courses
inferred← citeshttps://doi.org/10.1109/ahs.2018.8541417openalex-snapshot
k-mer Counting with FPGAs and HMC In-Memory Operations
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000667openalex-snapshot
Portable sequencing as a teaching tool in conservation and biodiversity research
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1007314openalex-snapshot
An educational guide for nanopore sequencing in the classroom
inferred← citeshttps://doi.org/10.1534/g3.120.401205openalex-snapshot
Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish ( Betta splendens ) in a University Master’s Course
inferred← citeshttps://doi.org/10.3390/genes10110858openalex-snapshot
Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions
inferred← citeshttps://doi.org/10.3390/plants14050638openalex-snapshot
Unravelling the Chloroplast Genome of the Kazakh Apricot (Prunus armeniaca L.) Through MinION Long-Read Sequencing
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