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Kinematic analysis of cell lineage reveals coherent and robust mechanical deformation patterns in zebrafish gastrulation

https://doi.org/10.1101/054353
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/aja.1002030302openalex-snapshot
Stages of embryonic development of the zebrafish
inferredcites →https://doi.org/10.1007/s10439-013-0853-zopenalex-snapshot
Topology of Blood Transport in the Human Left Ventricle by Novel Processing of Doppler Echocardiography
inferredcites →https://doi.org/10.1016/j.biocel.2009.04.015openalex-snapshot
Multi-scale mechanics from molecules to morphogenesis
inferredcites →https://doi.org/10.1016/j.cell.2013.05.008openalex-snapshot
Forces in Tissue Morphogenesis and Patterning
inferredcites →https://doi.org/10.1016/j.devcel.2015.12.028openalex-snapshot
Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos
inferredcites →https://doi.org/10.1016/j.gde.2011.08.003openalex-snapshot
Advances in multiphoton microscopy for imaging embryos
inferredcites →https://doi.org/10.1016/j.gde.2011.08.008openalex-snapshot
Measuring the multi-scale integration of mechanical forces during morphogenesis
inferredcites →https://doi.org/10.1016/j.jtbi.2012.08.017openalex-snapshot
Bayesian inference of force dynamics during morphogenesis
inferredcites →https://doi.org/10.1016/j.physd.2005.10.007openalex-snapshot
Definition and properties of Lagrangian coherent structures from finite-time Lyapunov exponents in two-dimensional aperiodic flows
inferredcites →https://doi.org/10.1016/s0167-2789(00)00142-1openalex-snapshot
Lagrangian coherent structures and mixing in two-dimensional turbulence
inferredcites →https://doi.org/10.1016/s0896-6273(00)80044-6openalex-snapshot
Labeling Neural Cells Using Adenoviral Gene Transfer of Membrane-Targeted GFP
inferredcites →https://doi.org/10.1023/a:1020843529530openalex-snapshot
Nonlinear Solid Mechanics: A Continuum Approach for Engineering Science
inferredcites →https://doi.org/10.1038/nature13070openalex-snapshot
Apical constriction drives tissue-scale hydrodynamic flow to mediate cell elongation
inferredcites →https://doi.org/10.1038/ncomms13929openalex-snapshot
A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation
inferredcites →https://doi.org/10.1038/ncomms9674openalex-snapshot
A workflow to process 3D+time microscopy images of developing organisms and reconstruct their cell lineage
inferredcites →https://doi.org/10.1038/nmeth.1327openalex-snapshot
Tissue tectonics: morphogenetic strain rates, cell shape change and intercalation
inferredcites →https://doi.org/10.1038/nmeth.3036openalex-snapshot
Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data
inferredcites →https://doi.org/10.1038/nmeth819openalex-snapshot
A guide to choosing fluorescent proteins
inferredcites →https://doi.org/10.1038/nprot.2014.087openalex-snapshot
3D live fluorescence imaging of cellular dynamics using Bessel beam plane illumination microscopy
inferredcites →https://doi.org/10.1063/1.857730openalex-snapshot
A general classification of three-dimensional flow fields
inferredcites →https://doi.org/10.1073/pnas.1006591107openalex-snapshot
Video force microscopy reveals the mechanics of ventral furrow invagination in Drosophila
inferredcites →https://doi.org/10.1126/science.1079478openalex-snapshot
Shaping the Vertebrate Body Plan by Polarized Embryonic Cell Movements
inferredcites →https://doi.org/10.1126/science.1167094openalex-snapshot
Dynamic Analyses of Drosophila Gastrulation Provide Insights into Collective Cell Migration
inferredcites →https://doi.org/10.1126/science.1189428openalex-snapshot
Cell Lineage Reconstruction of Early Zebrafish Embryos Using Label-Free Nonlinear Microscopy
inferredcites →https://doi.org/10.1126/science.1221071openalex-snapshot
Mechanical Control of Morphogenesis by Fat/Dachsous/Four-Jointed Planar Cell Polarity Pathway
inferredcites →https://doi.org/10.1126/science.1224143openalex-snapshot
Forces Driving Epithelial Spreading in Zebrafish Gastrulation
inferredcites →https://doi.org/10.1126/science.1230718openalex-snapshot
Physical Biology Returns to Morphogenesis
inferredcites →https://doi.org/10.1126/science.1234168openalex-snapshot
Imaging Morphogenesis: Technological Advances and Biological Insights
inferredcites →https://doi.org/10.1140/epje/i2007-10298-8openalex-snapshot
Discrete rearranging disordered patterns, part I: Robust statistical tools in two or three dimensions
inferredcites →https://doi.org/10.1140/epje/i2015-15006-7openalex-snapshot
Buckling along boundaries of elastic contrast as a mechanism for early vertebrate morphogenesis
inferredcites →https://doi.org/10.1140/epje/i2015-15033-4openalex-snapshot
Colloquium: Mechanical formalisms for tissue dynamics
inferredcites →https://doi.org/10.1146/annurev-cellbio-092910-154043openalex-snapshot
Gastrulation: Making and Shaping Germ Layers
inferredcites →https://doi.org/10.1146/annurev-cellbio-100109-104027openalex-snapshot
Force Generation, Transmission, and Integration during Cell and Tissue Morphogenesis
inferredcites →https://doi.org/10.1146/annurev.bioeng.2.1.399openalex-snapshot
Two-Photon Excitation Fluorescence Microscopy
inferredcites →https://doi.org/10.1242/dev.02678openalex-snapshot
A dynamic fate map of the forebrain shows how vertebrate eyes form and explains two causes of cyclopia
inferredcites →https://doi.org/10.1242/dev.121.8.2595openalex-snapshot
Order and coherence in the fate map of the zebrafish nervous system
inferredcites →https://doi.org/10.1371/journal.pcbi.1002512openalex-snapshot
Mechanical Stress Inference for Two Dimensional Cell Arrays

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/dgd.12695openalex-snapshot
Light‐sheet microscopy‐based 3D single‐cell tracking reveals a correlation between cell cycle and the start of endoderm cell internalization in early zebrafish development
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1006128openalex-snapshot
EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos
inferred← citeshttps://doi.org/10.3389/fdata.2022.1025256openalex-snapshot
Multi-scale governance and data for sustainable development
inferred← citeshttps://doi.org/10.3389/fphy.2020.00031openalex-snapshot
How Computation Is Helping Unravel the Dynamics of Morphogenesis
inferred← citeshttps://doi.org/10.70675/27258badz60cez4eb3zba1bz82f165c2aa33openalex-snapshot
Imagerie in vivo et in toto pour la reconstruction des dynamiques multiniveaux dans la morphogenèse embryonnaire
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