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Modeling the Multiple Facets of Speciation-with-Gene-Flow Towards Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus Clupeaformis)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Late Pleistocene human population bottlenecks, volcanic winter, and differentiation of modern humans

inferredcites →https://doi.org/10.1006/rwgn.2001.1470openalex-snapshot

Phylogeography

inferredcites →https://doi.org/10.1016/j.tig.2012.03.009openalex-snapshot

The genomics of speciation-with-gene-flow

inferredcites →https://doi.org/10.1017/s0016672300010156openalex-snapshot

The effect of linkage on limits to artificial selection

inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot

The hitch-hiking effect of a favourable gene

inferredcites →https://doi.org/10.1017/s0016672397002954openalex-snapshot

The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations

inferredcites →https://doi.org/10.1023/a:1008955229420openalex-snapshot

Species pairs of north temperate freshwater fishes: Evolution, taxonomy, and conservation

inferredcites →https://doi.org/10.1038/35016000openalex-snapshot

The genetic legacy of the Quaternary ice ages

inferredcites →https://doi.org/10.1038/hdy.1986.135openalex-snapshot

The barrier to genetic exchange between hybridising populations

inferredcites →https://doi.org/10.1038/hdy.1986.142openalex-snapshot

The effects of linkage and density-dependent regulation on gene flow

inferredcites →https://doi.org/10.1038/ncomms6770openalex-snapshot

European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation

inferredcites →https://doi.org/10.1038/nrg.2016.133openalex-snapshot

Making sense of genomic islands of differentiation in light of speciation

inferredcites →https://doi.org/10.1046/j.1365-294x.1998.00319.xopenalex-snapshot

Comparative phylogeography of Nearctic and Palearctic fishes

inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01202.xopenalex-snapshot

Speciation, hybrid zones and phylogeography — or seeing genes in space and time

inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01252.xopenalex-snapshot

Contrasting patterns of mitochondrial DNA and microsatellite introgressive hybridization between lineages of lake whitefish (Coregonus clupeaformis); relevance for speciation

inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot

The genic view of the process of speciation

inferredcites →https://doi.org/10.1073/pnas.0611164104openalex-snapshot

Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics

inferredcites →https://doi.org/10.1086/491688openalex-snapshot

Clustering of Contact Zones, Hybrid Zones, and Phylogeographic Breaks in North America

inferredcites →https://doi.org/10.1093/acprof:osobl/9780199587100.001.0001openalex-snapshot

Ecological Speciation

inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot

The variant call format and VCFtools

inferredcites →https://doi.org/10.1093/bioinformatics/btt763openalex-snapshot

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data

inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot

The effect of deleterious mutations on neutral molecular variation.

inferredcites →https://doi.org/10.1093/jhered/89.3.238openalex-snapshot

Distortion of allele frequency distributions provides a test for recent population bottlenecks

inferredcites →https://doi.org/10.1093/molbev/msm066openalex-snapshot

The Genetic Architecture of Ecological Speciation and the Association with Signatures of Selection in Natural Lake Whitefish (Coregonus sp. Salmonidae) Species Pairs

inferredcites →https://doi.org/10.1093/molbev/mst066openalex-snapshot

Crossing the Species Barrier: Genomic Hotspots of Introgression between Two Highly Divergent Ciona intestinalis Species

inferredcites →https://doi.org/10.1093/oso/9780195143850.003.0007openalex-snapshot

Ecological Theory of Adaptive Radiation An Empirical Assessment from Coregonine Fishes (Salmoniformes)

inferredcites →https://doi.org/10.1098/rspb.2000.1294openalex-snapshot

Historical contingency and ecological determinism interact to prime speciation in sticklebacks,Gasterosteus

inferredcites →https://doi.org/10.1098/rstb.1996.0075openalex-snapshot

Ecological speciation in postglacial fishes

inferredcites →https://doi.org/10.1098/rstb.2003.1388openalex-snapshot

Genetic consequences of climatic oscillations in the Quaternary

inferredcites →https://doi.org/10.1098/rstb.2009.0274openalex-snapshot

On the origin of species: insights from the ecological genomics of lake whitefish

inferredcites →https://doi.org/10.1098/rstb.2011.0197openalex-snapshot

Genome-wide patterns of divergence during speciation: the lake whitefish case study

inferredcites →https://doi.org/10.1098/rstb.2011.0249openalex-snapshot

Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

inferredcites →https://doi.org/10.1101/gr.6409707openalex-snapshot

A new approach to estimate parameters of speciation models with application to apes

inferredcites →https://doi.org/10.1111/evo.12075openalex-snapshot

THE GENETIC ARCHITECTURE OF REPRODUCTIVE ISOLATION DURING SPECIATION-WITH-GENE-FLOW IN LAKE WHITEFISH SPECIES PAIRS ASSESSED BY RAD SEQUENCING

inferredcites →https://doi.org/10.1111/evo.12329openalex-snapshot

PARALLEL EVOLUTION OF LOCAL ADAPTATION AND REPRODUCTIVE ISOLATION IN THE FACE OF GENE FLOW

inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb00155.xopenalex-snapshot

GENETICALLY BASED PHENOTYPE-ENVIRONMENT ASSOCIATION FOR SWIMMING BEHAVIOR IN LAKE WHITEFISH ECOTYPES (COREGONUS CLUPEAFORMIS MITCHILL)

inferredcites →https://doi.org/10.1111/j.1095-8312.1996.tb01434.xopenalex-snapshot

Some genetic consequences of ice ages, and their role in divergence and speciation

inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03062.xopenalex-snapshot

Parallel evolution of ecomorphological traits in the European whitefishCoregonus lavaretus(L.) species complex during postglacial times

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03715.xopenalex-snapshot

Speciation with gene flow could be common

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03830.xopenalex-snapshot

Glacial bottleneck and postglacial recolonization of a seed parasitic weevil, Curculio hilgendorfi, inferred from mitochondrial DNA variation

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05080.xopenalex-snapshot

The coupling hypothesis: why genome scans may fail to map local adaptation genes

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05343.xopenalex-snapshot

Isolation and gene flow: inferring the speciation history of European house mice

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05561.xopenalex-snapshot

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.)

inferredcites →https://doi.org/10.1111/j.1420-9101.2007.01304.xopenalex-snapshot

Parallel evolution of lake whitefish dwarf ecotypes in association with limnological features of their adaptive landscape

inferredcites →https://doi.org/10.1111/j.1420-9101.2010.02121.xopenalex-snapshot

Role of epibenthic resource opportunities in the parallel evolution of lake whitefish species pairs (Coregonus sp.)

inferredcites →https://doi.org/10.1111/j.1558-5646.1997.tb02401.xopenalex-snapshot

MULTIPLE MODES OF SPECIATION INVOLVED IN THE PARALLEL EVOLUTION OF SYMPATRIC MORPHOTYPES OF LAKE WHITEFISH (COREGONUS CLUPEAFORMIS, SALMONIDAE)

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00622.xopenalex-snapshot

THE EVOLUTION OF STRONG REPRODUCTIVE ISOLATION

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00943.xopenalex-snapshot

THE EFFICACY OF DIVERGENCE HITCHHIKING IN GENERATING GENOMIC ISLANDS DURING ECOLOGICAL SPECIATION

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02883.xopenalex-snapshot

Using differential introgression in hybrid zones to identify genomic regions involved in speciation

inferredcites →https://doi.org/10.1111/mec.12116openalex-snapshot

Glacial cycles as an allopatric speciation pump in north‐eastern A merican freshwater fishes

inferredcites →https://doi.org/10.1111/mec.12127openalex-snapshot

Mapping phenotypic, expression and transmission ratio distortion QTL using RAD markers in the Lake Whitefish (Coregonus clupeaformis)

inferredcites →https://doi.org/10.1111/mec.12354openalex-snapshot

Stacks: an analysis tool set for population genomics

inferredcites →https://doi.org/10.1111/mec.12524openalex-snapshot

On the accumulation of deleterious mutations during range expansions

inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

inferredcites →https://doi.org/10.1111/mec.13390openalex-snapshot

The consequences of not accounting for background selection in demographic inference

inferredcites →https://doi.org/10.1111/mec.13582openalex-snapshot

Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones

inferredcites →https://doi.org/10.1111/mec.13611openalex-snapshot

The evolution of genomic islands by increased establishment probability of linked alleles

inferredcites →https://doi.org/10.1111/mec.13838openalex-snapshot

Demographic modelling with whole‐genome data reveals parallel origin of similarPundamiliacichlid species after hybridization

inferredcites →https://doi.org/10.1139/z92-054openalex-snapshot

Ecology and evolution of sympatric sticklebacks (Gasterosteus): evidence for a species-pair in Paxton Lake, Texada Island, British Columbia

inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

inferredcites →https://doi.org/10.1371/journal.pbio.1002112openalex-snapshot

Natural Selection Constrains Neutral Diversity across A Wide Range of Species

inferredcites →https://doi.org/10.1371/journal.pbio.2000234openalex-snapshot

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot

Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data

inferredcites →https://doi.org/10.1371/journal.pgen.1002967openalex-snapshot

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

inferredcites →https://doi.org/10.1371/journal.pgen.1003905openalex-snapshot

Robust Demographic Inference from Genomic and SNP Data

inferredcites →https://doi.org/10.1371/journal.pgen.1004379openalex-snapshot

The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits

inferredcites →https://doi.org/10.1371/journal.pgen.1006157openalex-snapshot

Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids

inferredcites →https://doi.org/10.1534/genetics.103.024182openalex-snapshot

Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis

inferredcites →https://doi.org/10.2307/2409706openalex-snapshot

Phylogeographic Structure in Mitochondrial DNA of the Lake Whitefish (Coregonus clupeaformis) and Its Relation to Pleistocene Glaciations

inferredcites →https://doi.org/10.2307/2410186openalex-snapshot

Evidence for Multiple Origins and Sympatric Divergence of Trophic Ecotypes of Smelt (Osmerus) in Northeastern North America

inferredcites →https://doi.org/10.2307/2410667openalex-snapshot

Evidence for Sympatric Genetic Divergence of Anadromous and Nonanadromous Morphs of Sockeye Salmon (Oncorhynchus nerka)

inferredcites →https://doi.org/10.2307/2640895openalex-snapshot

Correlated Trophic Specialization and Genetic Divergence in Sympatric Lake Whitefish Ecotypes (Coregonus clupeaformis): Support for the Ecological Speciation Hypothesis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/cz/zow107openalex-snapshot

Editorial Dedicated population genomics for the silent world: the specific questions of marine population genetics

inferred← citeshttps://doi.org/10.1101/161786openalex-snapshot

Parallel pattern of differentiation at a genomic island shared between clinal and mosaic hybrid zones in a complex of cryptic seahorse lineages

inferred← citeshttps://doi.org/10.1111/1755-0998.12686openalex-snapshot

multi‐dice : r package for comparative population genomic inference under hierarchical co‐demographic models of independent single‐population size changes

inferred← citeshttps://doi.org/10.1111/evo.13486openalex-snapshot

The demographic history of Atlantic salmon ( Salmo salar ) across its distribution range reconstructed from approximate Bayesian computations*

inferred← citeshttps://doi.org/10.1111/mec.13847openalex-snapshot

Convergence in organ size but not energy metabolism enzyme activities among wild Lake Whitefish (Coregonus clupeaformis) species pairs

inferred← citeshttps://doi.org/10.70675/291a3043z7085z4fc6z8537ze59e410a08fbopenalex-snapshot

Isolement reproductif et architecture génomique de la différenciation chez deux espèces du complexe Jaera albifrons (isopodes marins) - Etude de populations mixtes présentant des niveaux d'isolement interspécifique contrastés

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