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Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice

https://doi.org/10.1098/rstb.2011.0249
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Geographical variation in size in the European rabbit Oryctolagus cuniculus (Lagomorpha: Leporidae) in western Europe and North Africa
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The evolutionary history of the European rabbit (Oryctolagus cuniculus): major patterns of population differentiation and geographic expansion inferred from protein polymorphism
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Darwin and modern science
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Mitochondrial DNA evolution in lagomorphs: Origin of systematic heteroplasmy and organization of diversity in European rabbits
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Genetic analysis of X-linked hybrid sterility in the house mouse
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Hybrid sterility in the mouse
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Background selection and population differentiation
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Chromosomal speciation revisited: rearranging theory with pieces of evidence
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Chromosomal rearrangements and speciation
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Sex chromosomes: Evolving dosage compensation
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Heredity and Variation in Modern Lights
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The hitch-hiking effect of a favourable gene
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Absence of Y-chromosome introgression across the hybrid zone between Mus musculus domesticus and Mus musculus musculus
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The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1017/s0016672397002954openalex-snapshot
The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations
inferredcites →https://doi.org/10.1017/s001667239800319xopenalex-snapshot
Genetic hitch-hiking in a subdivided population
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Interactions among quantitative traits in the course of sympatric speciation
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On the origin of species by sympatric speciation
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Genetic differentiation between sympatric host races of the apple maggot fly Rhagoletis pomonella
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Genetic differences between host races of Rhagoletis pomonella
inferredcites →https://doi.org/10.1038/356519a0openalex-snapshot
Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
inferredcites →https://doi.org/10.1038/365548a0openalex-snapshot
African and North American populations of Drosophila melanogaster are very different at the DNA level
inferredcites →https://doi.org/10.1038/368629a0openalex-snapshot
Sympatric speciation suggested by monophyly of crater lake cichlids
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Biochemical genetics of hybridisation in european house mice
inferredcites →https://doi.org/10.1038/hdy.2009.151openalex-snapshot
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
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Speciation along environmental gradients
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Sympatric speciation in palms on an oceanic island
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A high-resolution recombination map of the human genome
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Indirect measures of gene flow and migration: FST≠1/(4Nm+1)
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Phylogeography of the European rabbit (Oryctolagus cuniculus) in the Iberian Peninsula inferred from RFLP analysis of the cytochrome b gene
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Counterselection on sex chromosomes in the Mus musculus European hybrid zone
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Markov chain Monte Carlo without likelihoods
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Mayr, Dobzhansky, and Bush and the complexities of sympatric speciation in Rhagoletis
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Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
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Chromosomal inversions and the reproductive isolation of species
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Analysis of Gene Diversity in Subdivided Populations
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A test of the background selection hypothesis based on nucleotide data from Drosophila ananassae
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A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans
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Genetics and the Origin of Species
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PopABC: a program to infer historical demographic parameters
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EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
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A Test of Neutral Molecular Evolution Based on Nucleotide Data
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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
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Estimation of gene diversity at the b locus of the constant region of the immunoglobulin light chain in natural populations of European rabbit (Oryctolagus cuniculus) in Portugal, Andalusia and on the Azorean Islands.
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Statistical tests of neutrality of mutations.
inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot
The effect of deleterious mutations on neutral molecular variation.
inferredcites →https://doi.org/10.1093/genetics/145.2.505openalex-snapshot
Inferring Coalescence Times From DNA Sequence Data
inferredcites →https://doi.org/10.1093/genetics/150.3.1133openalex-snapshot
DNA Variability and Recombination Rates at X-Linked Loci in Humans
inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
inferredcites →https://doi.org/10.1093/genetics/162.4.2025openalex-snapshot
Approximate Bayesian Computation in Population Genetics
inferredcites →https://doi.org/10.1093/genetics/166.2.913openalex-snapshot
Hybrid Breakdown Caused by Substitution of the X Chromosome Between Two Mouse Subspecies
inferredcites →https://doi.org/10.1093/molbev/msg072openalex-snapshot
Selection at Linked Sites in the Partial Selfer Caenorhabditis elegans
inferredcites →https://doi.org/10.1093/molbev/msh030openalex-snapshot
Genetic Variation Versus Recombination Rate in a Structured Population of Mice
inferredcites →https://doi.org/10.1093/molbev/msj117openalex-snapshot
Soft Sweeps II—Molecular Population Genetics of Adaptation from Recurrent Mutation or Migration
inferredcites →https://doi.org/10.1093/molbev/msp296openalex-snapshot
Isolation with Migration Models for More Than Two Populations
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003763openalex-snapshot
Stationary Distributions of Microsatellite Loci Between Divergent Population Groups of the European Rabbit (Oryctolagus cuniculus)
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004103openalex-snapshot
Inferring the History of Speciation from Multilocus DNA Sequence Data: The Case of Drosophila pseudoobscura and Close Relatives
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026091openalex-snapshot
Population growth of human Y chromosomes: a study of Y chromosome microsatellites
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The causes of phylogenetic conflict in a classic Drosophila species group
inferredcites →https://doi.org/10.1098/rstb.2011.0246openalex-snapshot
Coalescent patterns for chromosomal inversions in divergent populations
inferredcites →https://doi.org/10.1098/rstb.2011.0250openalex-snapshot
Genomic impacts of chromosomal inversions in parapatric Drosophila species
inferredcites →https://doi.org/10.1098/rstb.2011.0256openalex-snapshot
Establishment of new mutations under divergence and genome hitchhiking
inferredcites →https://doi.org/10.1098/rstb.2011.0263openalex-snapshot
Genomic divergence during speciation: causes and consequences
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Extensive recombination rate variation in the house mouse species complex inferred from genetic linkage maps
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Genomic islands of differentiation between house mouse subspecies
inferredcites →https://doi.org/10.1101/gr.6409707openalex-snapshot
A new approach to estimate parameters of speciation models with application to apes
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Genome-wide patterns of gene flow across a house mouse hybrid zone
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A STANDARDIZED GENETIC DIFFERENTIATION MEASURE
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Postzygotic isolation between the two European subspecies of the house mouse: estimates from fertility patterns in wild and laboratory-bred hybrids
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First occurrence of the house mouse (Mus musculus domesticus Schwarz & Schwarz, 1943) in the Western Mediterranean: a zooarchaeological revision of subfossil occurrences
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Inferences of selection and migration in the Danish house mouse hybrid zone
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High levels of nucleotide diversity in the European rabbit (Oryctolagus cuniculus) SRY gene
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02617.xopenalex-snapshot
Recombination and speciation
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03887.xopenalex-snapshot
G ST and its relatives do not measure differentiation
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Reduced introgression of the Y chromosome between subspecies of the European rabbit (Oryctolagus cuniculus) in the Iberian Peninsula
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.04005.xopenalex-snapshot
Inferring the history of speciation in house mice from autosomal, X‐linked, Y‐linked and mitochondrial genes
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Interpreting the estimated timing of migration events between hybridizing species
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Higher differentiation among subspecies of the house mouse (Mus musculus) in genomic regions with low recombination
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ABRUPT CLINE FOR SEX CHROMOSOMES IN A HYBRID ZONE BETWEEN TWO SPECIES OF MICE
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GENETIC ANALYSIS OF AUTOSOMAL AND X-LINKED MARKERS ACROSS A MOUSE HYBRID ZONE
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ASYMMETRY AND POLYMORPHISM OF HYBRID MALE STERILITY DURING THE EARLY STAGES OF SPECIATION IN HOUSE MICE
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00846.xopenalex-snapshot
THE VARIABLE GENOMIC ARCHITECTURE OF ISOLATION BETWEEN HYBRIDIZING SPECIES OF HOUSE MICE
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SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES
inferredcites →https://doi.org/10.1126/science.1080600openalex-snapshot
Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes
inferredcites →https://doi.org/10.1126/science.1163601openalex-snapshot
A Mouse Speciation Gene Encodes a Meiotic Histone H3 Methyltransferase
inferredcites →https://doi.org/10.1126/science.1181495openalex-snapshot
Prdm9 Controls Activation of Mammalian Recombination Hotspots
inferredcites →https://doi.org/10.1126/science.1182363openalex-snapshot
Drive Against Hotspot Motifs in Primates Implicates the PRDM9 Gene in Meiotic Recombination
inferredcites →https://doi.org/10.1126/science.1183439openalex-snapshot
PRDM9 Is a Major Determinant of Meiotic Recombination Hotspots in Humans and Mice
inferredcites →https://doi.org/10.1126/science.1198878openalex-snapshot
Classic Selective Sweeps Were Rare in Recent Human Evolution
inferredcites →https://doi.org/10.1126/science.159.3819.1065openalex-snapshot
Models of Speciation
inferredcites →https://doi.org/10.1126/science.287.5451.306openalex-snapshot
Natural Selection and Parallel Speciation in Sympatric Sticklebacks
inferredcites →https://doi.org/10.1142/9781860947162_0015openalex-snapshot
THE MOUSE IN BIOMEDICAL RESEARCH
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102209-144621openalex-snapshot
Approximate Bayesian Computation in Evolution and Ecology
inferredcites →https://doi.org/10.1146/annurev-ecolsys-102209-144644openalex-snapshot
Divergence with Gene Flow: Models and Data
inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095804openalex-snapshot
Sympatric Speciation: Models and Empirical Evidence
inferredcites →https://doi.org/10.1146/annurev.es.16.110185.000553openalex-snapshot
Analysis of Hybrid Zones
inferredcites →https://doi.org/10.1146/annurev.es.24.110193.001003openalex-snapshot
The Evolution of House Mice
inferredcites →https://doi.org/10.1371/journal.pbio.0030193openalex-snapshot
On the Number of New World Founders: A Population Genetic Portrait of the Peopling of the Americas
inferredcites →https://doi.org/10.1371/journal.pbio.0040395openalex-snapshot
A High-Resolution Single Nucleotide Polymorphism Genetic Map of the Mouse Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1000695openalex-snapshot
Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data
inferredcites →https://doi.org/10.1371/journal.pgen.1000729openalex-snapshot
Fine-Scale Phylogenetic Discordance across the House Mouse Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1000886openalex-snapshot
Human Population Differentiation Is Strongly Correlated with Local Recombination Rate
inferredcites →https://doi.org/10.1371/journal.pgen.1001148openalex-snapshot
Widespread Over-Expression of the X Chromosome in Sterile F1 Hybrid Mice
inferredcites →https://doi.org/10.1534/genetics.103.024182openalex-snapshot
Multilocus Methods for Estimating Population Sizes, Migration Rates and Divergence Time, With Applications to the Divergence of Drosophila pseudoobscura and D. persimilis
inferredcites →https://doi.org/10.1534/genetics.104.027482openalex-snapshot
The Role of Natural Selection in Genetic Differentiation of Worldwide Populations of Drosophila ananassae
inferredcites →https://doi.org/10.1534/genetics.104.036947openalex-snapshot
Soft Sweeps
inferredcites →https://doi.org/10.1534/genetics.105.054106openalex-snapshot
Contrasting Patterns of Introgression at X-Linked Loci Across the Hybrid Zone Between Subspecies of the European Rabbit (Oryctolagus cuniculus)
inferredcites →https://doi.org/10.1534/genetics.106.069419openalex-snapshot
Reduced X-Linked Diversity in Derived Populations of House Mice
inferredcites →https://doi.org/10.1534/genetics.107.079988openalex-snapshot
Nucleotide Variation in Wild and Inbred Mice
inferredcites →https://doi.org/10.1534/genetics.107.085340openalex-snapshot
A Complex Genetic Basis to X-Linked Hybrid Male Sterility Between Two Species of House Mice
inferredcites →https://doi.org/10.1534/genetics.108.096826openalex-snapshot
Recombination and Speciation: Loci Near Centromeres Are More Differentiated Than Loci Near Telomeres Between Subspecies of the European Rabbit (Oryctolagus cuniculus)
inferredcites →https://doi.org/10.1534/genetics.108.098095openalex-snapshot
Inference of Historical Changes in Migration Rate From the Lengths of Migrant Tracts
inferredcites →https://doi.org/10.1534/genetics.109.105486openalex-snapshot
A New Standard Genetic Map for the Laboratory Mouse
inferredcites →https://doi.org/10.1554/05-273.1openalex-snapshot
THE SIGNATURE OF POSITIVE SELECTION ON STANDING GENETIC VARIATION
inferredcites →https://doi.org/10.17226/11310openalex-snapshot
Systematics and the Origin of Species
inferredcites →https://doi.org/10.2307/1435536openalex-snapshot
Genetics and the Origin of Species
inferredcites →https://doi.org/10.2307/2409762openalex-snapshot
Abrupt Cline for Sex Chromosomes in a Hybrid Zone between Two Species of Mice
inferredcites →https://doi.org/10.2307/4509787openalex-snapshot
Systematics and the Origin of Species
inferredcites →https://doi.org/10.7312/nei-92038openalex-snapshot
Molecular Evolutionary Genetics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Global adaptation complicates the interpretation of genome scans for local adaptation
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Speciation with gene flow
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Patterns of evolution in MHC class II DQA and DQB exon 2 genes of Alpine mountain hares, Lepus timidus varronis, and sympatric and parapatric brown hares, L. europaeus, from Switzerland
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Mechanisms and tests for geographic clines in genetic polymorphisms
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Phylogenetic placement of Turkish populations of Ixodes ricinus and Ixodes inopinatus
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Genetic differentiation within and away from the chromosomal rearrangements characterising hybridising chromosomal races of the western house mouse (Mus musculus domesticus)
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Predicting global numbers of teleomorphic ascomycetes
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Genome-scale analysis of demographic history and adaptive selection
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Hybrid speciation via inheritance of alternate alleles of parental isolating genes
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Out with the old, in with the new: Meiotic driving of sex chromosome evolution
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Conflictual speciation: species formation via genomic conflict
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Recombination Rate Evolution and the Origin of Species
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Unifying Theoretical and Empirical Perspectives on Genomic Differentiation
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Recombination-aware phylogenomics
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Integrating phylogenetics, phylogeography and population genetics through genomes and evolutionary theory
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Multiple introgression events during the diversification history of the edible Mexican grasshopper genus Sphenarium (Orthoptera: Pyrgomorphidae)
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Recombination rate variation shapes genomic variability of phylogeographic structure in a widespread North American songbird (Aves: Certhia americana)
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Meiosis and Fertility Associated with Chromosomal Heterozygosity
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Is It Really the Chromosomes?
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Origin of the chromosomal radiation of Madeiran house mice: a microsatellite analysis of metacentric chromosomes
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A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks
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A recombination suppressor contributes to ecological speciation in OSTRINIA moths
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Reduced recombination patterns in Robertsonian hybrids between chromosomal races of the house mouse: chiasma analyses
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Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex
inferred← citeshttps://doi.org/10.1038/ncomms2833openalex-snapshot
Genomic islands of divergence are not affected by geography of speciation in sunflowers
inferred← citeshttps://doi.org/10.1038/ncomms6770openalex-snapshot
European sea bass genome and its variation provide insights into adaptation to euryhalinity and speciation
inferred← citeshttps://doi.org/10.1038/nrg.2016.133openalex-snapshot
Making sense of genomic islands of differentiation in light of speciation
inferred← citeshttps://doi.org/10.1038/nrg3644openalex-snapshot
Genomics and the origin of species
inferred← citeshttps://doi.org/10.1038/s41437-019-0259-2openalex-snapshot
Hybridization drives genetic erosion in sympatric desert fishes of western North America
inferred← citeshttps://doi.org/10.1038/s41438-020-00373-2openalex-snapshot
Dissecting genetic diversity and genomic background of Petunia cultivars with contrasting growth habits
inferred← citeshttps://doi.org/10.1038/s41467-018-04963-6openalex-snapshot
The origin and remolding of genomic islands of differentiation in the European sea bass
inferred← citeshttps://doi.org/10.1038/s41467-019-12210-9openalex-snapshot
Genome-wide recombination map construction from single individuals using linked-read sequencing
inferred← citeshttps://doi.org/10.1038/s41467-022-32316-xopenalex-snapshot
Repeated genetic adaptation to altitude in two tropical butterflies
inferred← citeshttps://doi.org/10.1038/s41467-023-44023-2openalex-snapshot
Dispersal from the Qinghai-Tibet plateau by a high-altitude butterfly is associated with rapid expansion and reorganization of its genome
inferred← citeshttps://doi.org/10.1038/s41559-022-01980-zopenalex-snapshot
Chromosome fusions repatterned recombination rate and facilitated reproductive isolation during Pristionchus nematode speciation
inferred← citeshttps://doi.org/10.1038/s41576-020-0240-1openalex-snapshot
From molecules to populations: appreciating and estimating recombination rate variation
inferred← citeshttps://doi.org/10.1038/s41586-025-09740-2openalex-snapshot
An ancient recombination desert is a speciation supergene in placental mammals
inferred← citeshttps://doi.org/10.1038/s41598-023-48870-3openalex-snapshot
Pericentromeric recombination suppression and the ‘large X effect’ in plants
inferred← citeshttps://doi.org/10.1038/s42003-025-09073-wopenalex-snapshot
Divergent selection, recombination variability, and noncoding introgression drive speciation and adaptation in threadfin Eleutheronema
inferred← citeshttps://doi.org/10.1038/s42003-025-09379-9openalex-snapshot
Continent-wide view of genomic diversity and divergence in the wolves of Asia
inferred← citeshttps://doi.org/10.1073/pnas.1219381110openalex-snapshot
Genomic rearrangements and the evolution of clusters of locally adaptive loci
inferred← citeshttps://doi.org/10.1073/pnas.1601066113openalex-snapshot
Reticulation, divergence, and the phylogeography–phylogenetics continuum
inferred← citeshttps://doi.org/10.1073/pnas.1616755114openalex-snapshot
Population-genomic inference of the strength and timing of selection against gene flow
inferred← citeshttps://doi.org/10.1073/pnas.2023801118openalex-snapshot
Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands
inferred← citeshttps://doi.org/10.1073/pnas.2121822119openalex-snapshot
Sympatric speciation of the spiny mouse from Evolution Canyon in Israel substantiated genomically and methylomically
inferred← citeshttps://doi.org/10.1073/pnas.2309168121openalex-snapshot
The temporal and genomic scale of selection following hybridization
inferred← citeshttps://doi.org/10.1073/pnas.2609058123openalex-snapshot
Evolution of genome-wide barriers to gene flow during complex speciation in rattlesnakes
inferred← citeshttps://doi.org/10.1086/684583openalex-snapshot
Hybrid Incompatibilities, Local Adaptation, and the Genomic Distribution of Natural Introgression between Species
inferred← citeshttps://doi.org/10.1086/688018openalex-snapshot
Finding the Genomic Basis of Local Adaptation: Pitfalls, Practical Solutions, and Future Directions
inferred← citeshttps://doi.org/10.1086/704943openalex-snapshot
Sex Differences in the Recombination Landscape
inferred← citeshttps://doi.org/10.1086/710022openalex-snapshot
The Origin and Spread of Locally Adaptive Seasonal Camouflage in Snowshoe Hares
inferred← citeshttps://doi.org/10.1093/aob/mcad083openalex-snapshot
Adaptive divergence and genetic vulnerability of relict species under climate change: a case study of Pterocarya macroptera
inferred← citeshttps://doi.org/10.1093/biolinnean/blag008openalex-snapshot
Divergence-with-gene-flow leads to decoupled phenotypic evolution in a passerine ( Cranioleuca pyrrhophia , Furnariidae) along a dry forest gradient
inferred← citeshttps://doi.org/10.1093/biolinnean/bly063openalex-snapshot
What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species
inferred← citeshttps://doi.org/10.1093/cz/zow017openalex-snapshot
Differential introgression suggests candidate beneficial and barrier loci between two parapatric subspecies of Pearson′s horseshoe bat Rhinolophus pearsoni
inferred← citeshttps://doi.org/10.1093/czoolo/59.1.53openalex-snapshot
The consequences of genomic architecture on ecological speciation in postglacial fishes
inferred← citeshttps://doi.org/10.1093/dnares/dsx048openalex-snapshot
Construction of PRDM9 allele-specific recombination maps in cattle using large-scale pedigree analysis and genome-wide single sperm genomics
inferred← citeshttps://doi.org/10.1093/g3journal/jkab402openalex-snapshot
The recombination landscapes of spiny lizards (genusSceloporus)
inferred← citeshttps://doi.org/10.1093/g3journal/jkac145openalex-snapshot
Widespread genomic signatures of reproductive isolation and sex-specific selection in the Eastern Yellow Robin, Eopsaltria australis
inferred← citeshttps://doi.org/10.1093/gbe/evab120openalex-snapshot
The Genomic Signature of Allopatric Speciation in a Songbird Is Shaped by Genome Architecture (Aves:Certhia americana)
inferred← citeshttps://doi.org/10.1093/gbe/evab255openalex-snapshot
Comparative Population Genomics of Cryptic Speciation and Adaptive Divergence in Bicknell’s and Gray-Cheeked Thrushes (Aves: Catharus bicknelli and Catharus minimus )
inferred← citeshttps://doi.org/10.1093/gbe/evab288openalex-snapshot
Bidirectional Introgression between Mus musculus domesticus and Mus spretus
inferred← citeshttps://doi.org/10.1093/gbe/evad233openalex-snapshot
Fine-Scale Map Reveals Highly Variable Recombination Rates Associated with Genomic Features in the Eurasian Blackcap
inferred← citeshttps://doi.org/10.1093/gbe/evae002openalex-snapshot
Genomic Architecture Predicts Tree Topology, Population Structuring, and Demographic History in Amazonian Birds
inferred← citeshttps://doi.org/10.1093/gbe/evaf162openalex-snapshot
Single Nucleotide Polymorphisms, Structural Variants, and Short Tandem Repeats Capture Distinct Signals of Adaptive Divergence in the Atlantic Puffin
inferred← citeshttps://doi.org/10.1093/gbe/evaf218openalex-snapshot
Speciation Genomics in the Tiger Whiptail Lizards ( Aspidoscelis tigris Complex)
inferred← citeshttps://doi.org/10.1093/gbe/evv203openalex-snapshot
Reticulate Speciation and Barriers to Introgression in theAnopheles gambiaeSpecies Complex
inferred← citeshttps://doi.org/10.1093/gbe/evy194openalex-snapshot
Analysis of Genome-Wide Differentiation between Native and Introduced Populations of the Cupped Oysters Crassostrea gigas and Crassostrea angulata
inferred← citeshttps://doi.org/10.1093/gbe/evz110openalex-snapshot
Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis
inferred← citeshttps://doi.org/10.1093/genetics/iyaa019openalex-snapshot
Sex-specific variation in the genome-wide recombination rate
inferred← citeshttps://doi.org/10.1093/genetics/iyab173openalex-snapshot
Phylogenomic approaches to detecting and characterizing introgression
inferred← citeshttps://doi.org/10.1093/iob/obz018openalex-snapshot
How to Investigate the Origins of Novelty: Insights Gained from Genetic, Behavioral, and Fitness Perspectives
inferred← citeshttps://doi.org/10.1093/jeb/voaf056openalex-snapshot
Why does the target-recognition site in PRDM9 have unusually high mutation rates?
inferred← citeshttps://doi.org/10.1093/jhered/esab054openalex-snapshot
Variable Signatures of Selection Despite Conserved Recombination Landscapes Early in Speciation
inferred← citeshttps://doi.org/10.1093/jhered/esad007openalex-snapshot
Genetic architectures of postmating isolation and morphology of two highly diverged rockfishes (genusSebastes)
inferred← citeshttps://doi.org/10.1093/jhered/esag020openalex-snapshot
A chromosome-level genome assembly for snowshoe hare ( Lepus americanus )
inferred← citeshttps://doi.org/10.1093/jhered/esu033openalex-snapshot
Hybridization, Introgression, and the Nature of Species Boundaries
inferred← citeshttps://doi.org/10.1093/jhered/esw061openalex-snapshot
A Half-Century of Studies on a Chromosomal Hybrid Zone of the House Mouse
inferred← citeshttps://doi.org/10.1093/molbev/msaa003openalex-snapshot
Snake Recombination Landscapes Are Concentrated in Functional Regions despite PRDM9
inferred← citeshttps://doi.org/10.1093/molbev/msaa218openalex-snapshot
Few Fixed Variants between Trophic Specialist Pupfish Species Reveal CandidateCis-Regulatory Alleles Underlying Rapid Craniofacial Divergence
inferred← citeshttps://doi.org/10.1093/molbev/msab086openalex-snapshot
Genetic Barriers to Historical Gene Flow between Cryptic Species of Alpine Bumblebees Revealed by Comparative Population Genomics
inferred← citeshttps://doi.org/10.1093/molbev/msac008openalex-snapshot
Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome
inferred← citeshttps://doi.org/10.1093/molbev/msac122openalex-snapshot
Interactions Between Natural Selection and Recombination Shape the Genomic Landscape of Introgression
inferred← citeshttps://doi.org/10.1093/molbev/msad013openalex-snapshot
Re-evaluating Homoploid Reticulate Evolution in Helianthus Sunflowers
inferred← citeshttps://doi.org/10.1093/molbev/msad049openalex-snapshot
Recombination Variation Shapes Phylogeny and Introgression in Wild Diploid Strawberries
inferred← citeshttps://doi.org/10.1093/molbev/msae031openalex-snapshot
Secondary Contact, Introgressive Hybridization, and Genome Stabilization in Sticklebacks
inferred← citeshttps://doi.org/10.1093/molbev/msae194openalex-snapshot
The Fate of a Polygenic Phenotype Within the Genomic Landscapes of Introgression in the European Seabass Hybrid Zone
inferred← citeshttps://doi.org/10.1093/molbev/msaf100openalex-snapshot
Comparative Phylogenetics Reveal Clade-specific Drivers of Recombination Rate Evolution Across Vertebrates
inferred← citeshttps://doi.org/10.1093/molbev/msaf132openalex-snapshot
Footprints of Worldwide Adaptation in Structured Populations of Drosophila melanogaster Through the Expanded DEST 2.0 Genomic Resource
inferred← citeshttps://doi.org/10.1093/molbev/mst168openalex-snapshot
Genomic Divergence during Speciation Driven by Adaptation to Altitude
inferred← citeshttps://doi.org/10.1093/molbev/msv011openalex-snapshot
Functional Organization of the Genome May Shape the Species Boundary in the House Mouse
inferred← citeshttps://doi.org/10.1093/molbev/msw051openalex-snapshot
Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens
inferred← citeshttps://doi.org/10.1093/molbev/msw093openalex-snapshot
Genomic Profiles of Diversification and Genotype–Phenotype Association in Island Nematode Lineages
inferred← citeshttps://doi.org/10.1093/molbev/msw286openalex-snapshot
Novel candidate genes underlying extreme trophic specialization in Caribbean pupfishes
inferred← citeshttps://doi.org/10.1093/molbev/msy051openalex-snapshot
Genomics of Parallel Ecological Speciation in Lake Victoria Cichlids
inferred← citeshttps://doi.org/10.1093/molbev/msz139openalex-snapshot
Recombination-Aware Phylogenomics Reveals the Structured Genomic Landscape of Hybridizing Cat Species
inferred← citeshttps://doi.org/10.1093/molbev/msz259openalex-snapshot
Divergent Selection and Primary Gene Flow Shape Incipient Speciation of a Riparian Tree on Hawaii Island
inferred← citeshttps://doi.org/10.1093/molbev/msz260openalex-snapshot
Genomic Resources for Darters (Percidae: Etheostominae) Provide Insight into Postzygotic Barriers Implicated in Speciation
inferred← citeshttps://doi.org/10.1093/obo/9780199941728-0142openalex-snapshot
Geography of Speciation
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.001.0001openalex-snapshot
The Evolutionary Biology of Species
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.002.0004openalex-snapshot
Dedication
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0001openalex-snapshot
Introduction
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0002openalex-snapshot
What are species?
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0003openalex-snapshot
The evidence for species—phenotypic and genetic clustering
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0004openalex-snapshot
Why are there species?
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0005openalex-snapshot
What causes speciation?
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0006openalex-snapshot
Species and speciation without sex
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0007openalex-snapshot
Species boundaries and contemporary evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0008openalex-snapshot
Species interactions and contemporary evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0009openalex-snapshot
Predicting evolution in diverse communities
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0010openalex-snapshot
How does species richness accumulate over time?
inferred← citeshttps://doi.org/10.1093/oso/9780198749745.003.0011openalex-snapshot
Conclusions
inferred← citeshttps://doi.org/10.1093/oso/9780198838944.003.0008openalex-snapshot
Molecular deviants
inferred← citeshttps://doi.org/10.1093/sysbio/syab024openalex-snapshot
Most Genomic Loci Misrepresent the Phylogeny of an Avian Radiation Because of Ancient Gene Flow
inferred← citeshttps://doi.org/10.1093/sysbio/syad061openalex-snapshot
Geogenomic Predictors of Genetree Heterogeneity Explain Phylogeographic and Introgression History: A Case Study in an Amazonian Bird (Thamnophilus aethiops)
inferred← citeshttps://doi.org/10.1093/sysbio/syae036openalex-snapshot
Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies
inferred← citeshttps://doi.org/10.1093/sysbio/syaf021openalex-snapshot
Massive Inter-species Introgression Overwhelms Phylogenomic Relationships Among Jaguar, Lion, and Leopard
inferred← citeshttps://doi.org/10.1093/sysbio/syag001openalex-snapshot
A Genomic Perspective on Cryptic Species Reveals Complex Evolutionary Dynamics in the Gray Zone of the Speciation Continuum
inferred← citeshttps://doi.org/10.1093/sysbio/syag055openalex-snapshot
The Y Chromosome Is a Reliable Marker for Deep-Time Phylogenetic Inference
inferred← citeshttps://doi.org/10.1093/sysbio/syv045openalex-snapshot
Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data
inferred← citeshttps://doi.org/10.1093/sysbio/syv050openalex-snapshot
Inferring Speciation Processes from Patterns of Natural Variation in Microbial Genomes
inferred← citeshttps://doi.org/10.1098/rspb.2016.2414openalex-snapshot
Genomic islands of divergence or opportunities for introgression?
inferred← citeshttps://doi.org/10.1098/rspb.2025.1217openalex-snapshot
Adaptive epigenetic divergence can facilitate ecological speciation
inferred← citeshttps://doi.org/10.1098/rspb.2026.0791openalex-snapshot
Hidden genomic structure and widespread structural polymorphism across environmental gradients in the spiny sea star Marthasterias glacialis
inferred← citeshttps://doi.org/10.1098/rstb.2011.0199openalex-snapshot
What can patterns of differentiation across plant genomes tell us about adaptation and speciation?
inferred← citeshttps://doi.org/10.1098/rstb.2011.0245openalex-snapshot
Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes
inferred← citeshttps://doi.org/10.1098/rstb.2011.0250openalex-snapshot
Genomic impacts of chromosomal inversions in parapatric Drosophila species
inferred← citeshttps://doi.org/10.1098/rstb.2011.0263openalex-snapshot
Genomic divergence during speciation: causes and consequences
inferred← citeshttps://doi.org/10.1098/rstb.2016.0455openalex-snapshot
Variation in recombination frequency and distribution across eukaryotes: patterns and processes
inferred← citeshttps://doi.org/10.1098/rstb.2016.0459openalex-snapshot
Recombination rate plasticity: revealing mechanisms by design
inferred← citeshttps://doi.org/10.1098/rstb.2016.0471openalex-snapshot
Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies
inferred← citeshttps://doi.org/10.1098/rstb.2019.0548openalex-snapshot
Genome-wide patterns of divergence and introgression after secondary contact between Pungitius sticklebacks
inferred← citeshttps://doi.org/10.1098/rstb.2021.0226openalex-snapshot
Recombination landscape dimorphism and sex chromosome evolution in the dioecious plant Rumex hastatulus
inferred← citeshttps://doi.org/10.1101/029561openalex-snapshot
Variation in linked selection and recombination drive genomic divergence during allopatric speciation of European and American aspens
inferred← citeshttps://doi.org/10.1101/041467openalex-snapshot
Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in greenish warblers
inferred← citeshttps://doi.org/10.1101/068205openalex-snapshot
Chromosome arm specific patterns of polymorphism associated with chromosomal inversions in the major African malaria vector, Anopheles funestus
inferred← citeshttps://doi.org/10.1101/068932openalex-snapshot
Modeling the Multiple Facets of Speciation-with-Gene-Flow Towards Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus Clupeaformis)
inferred← citeshttps://doi.org/10.1101/072736openalex-snapshot
Population-genomic inference of the strength and timing of selection against gene flow
inferred← citeshttps://doi.org/10.1101/083931openalex-snapshot
Recombination Suppression is Unlikely to Contribute to Speciation in Sympatric Heliconius Butterflies
inferred← citeshttps://doi.org/10.1101/095596openalex-snapshot
Mitochondrial-nuclear interactions maintain geographic separation of deeply diverged mitochondrial lineages in the face of nuclear gene flow
inferred← citeshttps://doi.org/10.1101/2020.02.06.937813openalex-snapshot
Variation in recombination rate affects detection of outliers in genome scans under neutrality
inferred← citeshttps://doi.org/10.1101/2020.03.23.003947openalex-snapshot
Conspicuous candidate alleles point to cis -regulatory divergence underlying rapidly evolving craniofacial phenotypes
inferred← citeshttps://doi.org/10.1101/2020.04.05.026716openalex-snapshot
Genome-wide local ancestries discriminate homoploid hybrid speciation from secondary introgression in the red wolf (Canidae: Canis rufus )
inferred← citeshttps://doi.org/10.1101/2020.04.09.034470openalex-snapshot
Selection and gene flow define polygenic barriers between incipient butterfly species
inferred← citeshttps://doi.org/10.1101/2020.05.01.069740openalex-snapshot
We shall meet again - Genomics of historical admixture in the sea
inferred← citeshttps://doi.org/10.1101/2020.09.08.287292openalex-snapshot
Barriers to gene flow play an important role in miantaining reproductive isolation between two closely related Populus (Salicaceae) species
inferred← citeshttps://doi.org/10.1101/2020.11.03.354068openalex-snapshot
Selection on old variants drives adaptive radiation of Metrosideros across the Hawaiian Islands
inferred← citeshttps://doi.org/10.1101/2020.11.26.398933openalex-snapshot
An unexpected donor in the adaptive introgression candidate Helianthus annuus subsp. texanus
inferred← citeshttps://doi.org/10.1101/2021.11.03.466946openalex-snapshot
Recombination landscape dimorphism contributes to sex chromosome evolution in the dioecious plant Rumex hastatulus
inferred← citeshttps://doi.org/10.1101/2021.11.30.470630openalex-snapshot
Repeated genetic adaptation to high altitude in two tropical butterflies
inferred← citeshttps://doi.org/10.1101/2021.12.01.470789openalex-snapshot
Genomic architecture drives population structuring in Amazonian birds
inferred← citeshttps://doi.org/10.1101/2022.08.10.503388openalex-snapshot
A genomic timescale for placental mammal evolution
inferred← citeshttps://doi.org/10.1101/2022.09.23.509250openalex-snapshot
Selection leads to remarkable variability in the outcomes of hybridization across replicate hybrid zones
inferred← citeshttps://doi.org/10.1101/2022.09.25.509431openalex-snapshot
Recombination rate variation shapes genomic variability of phylogeographic structure in a widespread North American songbird (Aves: Certhia americana )
inferred← citeshttps://doi.org/10.1101/2022.10.14.512273openalex-snapshot
Re-evaluating homoploid reticulate evolution in the annual sunflowers
inferred← citeshttps://doi.org/10.1101/2023.08.22.554279openalex-snapshot
Geogenomic predictors of genetree heterogeneity in an Amazonian bird ( Thamnophilus aethiops )
inferred← citeshttps://doi.org/10.1101/2023.12.21.572897openalex-snapshot
Genome evolution is surprisingly predictable after initial hybridization
inferred← citeshttps://doi.org/10.1101/2024.06.28.599605openalex-snapshot
Molecular evolution of the meiotic recombination pathway in vertebrates
inferred← citeshttps://doi.org/10.1101/2025.05.02.651899openalex-snapshot
DIST: Distance-based Inference of Species Trees
inferred← citeshttps://doi.org/10.1101/2025.07.09.664015openalex-snapshot
Integrative Species Delimitation in a Speciation Continuum: Phylogenomics, Cryptic Diversity, Diversification and Historical Biogeography of Sinocyclocheilus Cavefish
inferred← citeshttps://doi.org/10.1101/217984openalex-snapshot
Don’t throw out the sympatric species with the crater lake water: fine-scale investigation of introgression provides weak support for functional role of secondary gene flow in one of the clearest examples of sympatric speciation
inferred← citeshttps://doi.org/10.1101/326256openalex-snapshot
Background selection and the statistics of population differentiation: consequences for detecting local adaptation
inferred← citeshttps://doi.org/10.1101/367623openalex-snapshot
Searching for sympatric speciation in the genomic era
inferred← citeshttps://doi.org/10.1101/485904openalex-snapshot
Recombination-aware phylogenomics unravels the complex divergence of hybridizing species.
inferred← citeshttps://doi.org/10.1101/703108openalex-snapshot
Evolution of barrier loci at an intermediate stage of speciation with gene flow
inferred← citeshttps://doi.org/10.1101/864975openalex-snapshot
Demographic history and genomics of local adaptation in blue tit populations
inferred← citeshttps://doi.org/10.1101/cshperspect.a041445openalex-snapshot
The Role of Hybridization in Species Formation and Persistence
inferred← citeshttps://doi.org/10.1101/cshperspect.a041446openalex-snapshot
Structural Variants and Speciation: Multiple Processes at Play
inferred← citeshttps://doi.org/10.1101/gr.187237.114openalex-snapshot
Full-genome evolutionary histories of selfing, splitting, and selection in Caenorhabditis
inferred← citeshttps://doi.org/10.1101/gr.196485.115openalex-snapshot
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
inferred← citeshttps://doi.org/10.1101/gr.281470.125openalex-snapshot
Covariation of genetic and epigenetic divergence in barn swallows
inferred← citeshttps://doi.org/10.1111/ele.12120openalex-snapshot
Widespread evidence for incipient ecological speciation: a meta‐analysis of isolation‐by‐ecology
inferred← citeshttps://doi.org/10.1111/eva.12026openalex-snapshot
Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish
inferred← citeshttps://doi.org/10.1111/eva.12137openalex-snapshot
Climate change, adaptation, and phenotypic plasticity: the problem and the evidence
inferred← citeshttps://doi.org/10.1111/eva.12492openalex-snapshot
Genomic insights into adaptive divergence and speciation among malaria vectors of the Anopheles nili group
inferred← citeshttps://doi.org/10.1111/eva.12697openalex-snapshot
Combining mitochondrial and nuclear genome analyses to dissect the effects of colonization, environment, and geography on population structure in Pinus tabuliformis
inferred← citeshttps://doi.org/10.1111/eva.12891openalex-snapshot
Landscape genomics predicts climate change‐related genetic offset for the widespread Platycladus orientalis (Cupressaceae)
inferred← citeshttps://doi.org/10.1111/eva.13035openalex-snapshot
Demographic history and genomics of local adaptation in blue tit populations
inferred← citeshttps://doi.org/10.1111/eva.13046openalex-snapshot
Genetic architecture, demographic history, and genomic differentiation of Populus davidiana revealed by whole‐genome resequencing
inferred← citeshttps://doi.org/10.1111/eva.13767openalex-snapshot
Linked Selection and Gene Density Shape Genome‐Wide Patterns of Diversification in Peatmosses
inferred← citeshttps://doi.org/10.1111/eva.70103openalex-snapshot
Adaptive Introgression as an Evolutionary Force: A Meta‐Analysis of Knowledge Trends
inferred← citeshttps://doi.org/10.1111/evo.12054openalex-snapshot
UNDERSTANDING THE BASIS OF DIMINISHED GENE FLOW BETWEEN HYBRIDIZING CHROMOSOME RACES OF THE HOUSE MOUSE
inferred← citeshttps://doi.org/10.1111/evo.12191openalex-snapshot
GENOME EVOLUTION AND SPECIATION: TOWARD QUANTITATIVE DESCRIPTIONS OF PATTERN AND PROCESS
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