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Phylogenomic Analysis of Ants, Bees and Stinging Wasps: Improved Taxon Sampling Enhances Understanding of Hymenopteran Evolution

https://doi.org/10.1101/068957
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-3-662-10306-7openalex-snapshot
The Ants
inferredcites →https://doi.org/10.1016/j.cub.2012.10.044openalex-snapshot
Evolutionary Shift from Fighting to Foraging in Blind Cavefish through Changes in the Serotonin Network
inferredcites →https://doi.org/10.1016/j.ympev.2011.04.003openalex-snapshot
Evolution of the hymenopteran megaradiation
inferredcites →https://doi.org/10.1016/j.ympev.2011.12.007openalex-snapshot
Applications of next-generation sequencing to phylogeography and phylogenetics
inferredcites →https://doi.org/10.1016/j.ympev.2012.08.013openalex-snapshot
Phylogeny of halictine bees supports a shared origin of eusociality for Halictus and Lasioglossum (Apoidea: Anthophila: Halictidae)
inferredcites →https://doi.org/10.1016/j.ympev.2014.12.009openalex-snapshot
Higher-level phylogeny of the Hymenoptera inferred from mitochondrial genomes
inferredcites →https://doi.org/10.1038/nature15697openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nature19417openalex-snapshot
A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/scientificamerican0463-144openalex-snapshot
Predatory Wasps
inferredcites →https://doi.org/10.1071/is06002openalex-snapshot
Molecular analyses of the Apocrita (Insecta : Hymenoptera) suggest that the Chalcidoidea are sister to the diaprioid complex
inferredcites →https://doi.org/10.1073/pnas.0610140104openalex-snapshot
Multigene phylogeny reveals eusociality evolved twice in vespid wasps
inferredcites →https://doi.org/10.1073/pnas.1006299107openalex-snapshot
Comprehensive phylogeny of apid bees reveals the evolutionary origins and antiquity of cleptoparasitism
inferredcites →https://doi.org/10.1073/pnas.191248498openalex-snapshot
Incomplete taxon sampling is not a problem for phylogenetic inference
inferredcites →https://doi.org/10.1080/10635150290102339openalex-snapshot
Increased Taxon Sampling Greatly Reduces Phylogenetic Error
inferredcites →https://doi.org/10.1080/10635150290102357openalex-snapshot
Increased Taxon Sampling Is Advantageous for Phylogenetic Inference
inferredcites →https://doi.org/10.1080/10635150309346openalex-snapshot
Molecular Phylogenetics of Allodapine Bees, with Implications for the Evolution of Sociality and Progressive Rearing
inferredcites →https://doi.org/10.1080/10635150390132911openalex-snapshot
Is Sparse Taxon Sampling a Problem for Phylogenetic Inference?
inferredcites →https://doi.org/10.1080/10635150701472164openalex-snapshot
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1080/106351598260996openalex-snapshot
Is It Better to Add Taxa or Characters to a Difficult Phylogenetic Problem?
inferredcites →https://doi.org/10.1093/acprof:oso/9780195307979.001.0001openalex-snapshot
The Evolution of Social Wasps
inferredcites →https://doi.org/10.1093/bib/bbr014openalex-snapshot
The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu462openalex-snapshot
ASTRAL: genome-scale coalescent-based species tree estimation
inferredcites →https://doi.org/10.1093/bioinformatics/btv646openalex-snapshot
PHYLUCE is a software package for the analysis of conserved genomic loci
inferredcites →https://doi.org/10.1093/icb/icp043openalex-snapshot
Episodes in insect evolution
inferredcites →https://doi.org/10.1093/molbev/msn043openalex-snapshot
Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
inferredcites →https://doi.org/10.1093/molbev/msq089openalex-snapshot
Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mst116openalex-snapshot
Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
inferredcites →https://doi.org/10.1093/molbev/msu236openalex-snapshot
ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era
inferredcites →https://doi.org/10.1093/molbev/msv258openalex-snapshot
Phylogenomics Controlling for Base Compositional Bias Reveals a Single Origin of Eusociality in Corbiculate Bees
inferredcites →https://doi.org/10.1093/molbev/msv347openalex-snapshot
Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes)
inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/nar/gkq1145openalex-snapshot
Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera
inferredcites →https://doi.org/10.1093/nar/gks540openalex-snapshot
RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/sysbio/syq025openalex-snapshot
Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships
inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
inferredcites →https://doi.org/10.1093/sysbio/syv080openalex-snapshot
Total-Evidence Dating under the Fossilized Birth–Death Process
inferredcites →https://doi.org/10.1093/sysbio/syw005openalex-snapshot
Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus:Piranga)
inferredcites →https://doi.org/10.1093/sysbio/syw014openalex-snapshot
Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods
inferredcites →https://doi.org/10.1101/gr.128124.111openalex-snapshot
Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture
inferredcites →https://doi.org/10.1111/1755-0998.12328openalex-snapshot
Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among H ymenoptera
inferredcites →https://doi.org/10.1111/j.1096-0031.2011.00366.xopenalex-snapshot
Phylogenetic relationships among superfamilies of Hymenoptera
inferredcites →https://doi.org/10.1111/j.1365-3113.2005.00313.xopenalex-snapshot
The phylogenetic position of the enigmatic wasp family Heterogynaidae based on molecular data, with description of a new, nocturnal species (Hymenoptera: Apoidea)
inferredcites →https://doi.org/10.1111/j.1463-6409.2008.00340.xopenalex-snapshot
Molecular phylogenetics of Vespoidea indicate paraphyly of the superfamily and novel relationships of its component families and subfamilies
inferredcites →https://doi.org/10.1111/j.1463-6409.2012.00549.xopenalex-snapshot
Identifying the sister group to the bees: a molecular phylogeny of Aculeata with an emphasis on the superfamily Apoidea
inferredcites →https://doi.org/10.1111/mec.12050openalex-snapshot
Next‐generation phylogenetics takes root
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110512-135822openalex-snapshot
High-Throughput Genomic Data in Systematics and Phylogenetics
inferredcites →https://doi.org/10.1146/annurev-ento-120811-153633openalex-snapshot
The Impact of Molecular Data on Our Understanding of Bee Phylogeny and Evolution
inferredcites →https://doi.org/10.11646/zootaxa.1668.1.25openalex-snapshot
Phylogeny and Classification of Hymenoptera*
inferredcites →https://doi.org/10.1186/1471-2148-6-32openalex-snapshot
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
inferredcites →https://doi.org/10.1186/s12862-015-0283-7openalex-snapshot
Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates
inferredcites →https://doi.org/10.1186/s12864-015-2146-4openalex-snapshot
Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa
inferredcites →https://doi.org/10.1371/journal.pone.0042543openalex-snapshot
Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels
inferredcites →https://doi.org/10.1371/journal.pone.0069344openalex-snapshot
The Hymenopteran Tree of Life: Evidence from Protein-Coding Genes and Objectively Aligned Ribosomal Data
inferredcites →https://doi.org/10.1371/journal.pone.0076683openalex-snapshot
First Evidence for a Massive Extinction Event Affecting Bees Close to the K-T Boundary
inferredcites →https://doi.org/10.1371/journal.pone.0085024openalex-snapshot
An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0129183openalex-snapshot
Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
inferredcites →https://doi.org/10.17226/4901openalex-snapshot
Biodiversity II
inferredcites →https://doi.org/10.3724/sp.j.1002.2008.08016openalex-snapshot
Taxon sampling and the accuracy of phylogenetic analyses
inferredcites →https://doi.org/10.5281/zenodo.17378openalex-snapshot
Phylogeny Of Aculeata: Chrysidoidea And Vespoidea (Hymenoptera)
inferredcites →https://doi.org/10.5962/bhl.part.775openalex-snapshot
Studies of the phylogeny and classification of long-tongued bees (Hymenoptera: Apoidea)
inferredcites →https://doi.org/10.6079/j9illopenalex-snapshot
Illumiprocessor - software for Illumina read quality filtering
inferredcites →https://doi.org/10.7591/9781501737367openalex-snapshot
Solitary Wasps

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/jhered/esx062openalex-snapshot
Retention of Core Meiotic Genes Across Diverse Hymenoptera
inferred← citeshttps://doi.org/10.1093/jisesa/iez021openalex-snapshot
Widespread Occurrence of Black-Orange-Black Color Pattern in Hymenoptera
inferred← citeshttps://doi.org/10.1093/molbev/msw264openalex-snapshot
Evolution of DNA Methylation across Insects
inferred← citeshttps://doi.org/10.1093/sysbio/syaa063openalex-snapshot
Genomic Characterization and Curation of UCEs Improves Species Tree Reconstruction
inferred← citeshttps://doi.org/10.1111/2041-210x.12742openalex-snapshot
Enriching the ant tree of life: enhanced UCE bait set for genome‐scale phylogenetics of ants and other Hymenoptera
inferred← citeshttps://doi.org/10.1111/syen.12244openalex-snapshot
Ultraconserved elements show utility in phylogenetic inference of A dephaga ( C oleoptera) and suggest paraphyly of ‘Hydradephaga’
inferred← citeshttps://doi.org/10.1371/journal.pone.0188044openalex-snapshot
Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils
inferred← citeshttps://doi.org/10.3390/pathogens11070769openalex-snapshot
Phylogenomics and Diversification of the Schistosomatidae Based on Targeted Sequence Capture of Ultra-Conserved Elements
inferred← citeshttps://doi.org/10.5194/fr-20-239-2017openalex-snapshot
The wasp larva's last supper: 100 million years of evolutionary stasis in the larval development of rhopalosomatid wasps (Hymenoptera: Rhopalosomatidae)
inferred← citeshttps://doi.org/10.5194/fr-23-215-2020openalex-snapshot
†Cretolixon – a remarkable new genus of rhopalosomatid wasps (Hymenoptera: Vespoidea: Rhopalosomatidae) from chemically tested, mid-Cretaceous Burmese (Kachin) amber supports the monophyly of Rhopalosomatinae
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