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Less Is More in Mammalian Phylogenomics: AT-Rich Genes Minimize Tree Conflicts and Unravel the Root of Placental Mammals
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Meiotic recombination favors the spreading of deleterious mutations in human populations
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Comparing and Aggregating Partially Resolved Trees
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Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
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A relationship between GC content and coding-sequence length
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A Relationship Between GC Content and Coding-Sequence Length
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The Effect of Recombination on the Accuracy of Phylogeny Estimation
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Comparison of phylogenetic trees
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Comparing and aggregating partially resolved trees
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Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
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GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
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Molecules consolidate the placental mammal tree
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Gene tree discordance, phylogenetic inference and the multispecies coalescent
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Distribution of DNA methylation, CpGs, and CpG islands in human isochores
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Recombination explains isochores in mammalian genomes
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Biased gene conversion: implications for genome and sex evolution
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Evaluating placental inter-ordinal phylogenies with novel sequences including RAG1, γ-fibrinogen, ND6, and mt-tRNA, plus MCMC-driven nucleotide, amino acid, and codon models
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Molecular Evidence for the Major Clades of Placental Mammals
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Parallel adaptive radiations in two major clades of placental mammals
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Molecular phylogenetics and the origins of placental mammals
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Tunicates and not cephalochordates are the closest living relatives of vertebrates
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Genetic evidence for complex speciation of humans and chimpanzees
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Fine-scale recombination patterns differ between chimpanzees and humans
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Phylogenomics and the reconstruction of the tree of life
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Placental mammal diversification and the Cretaceous–Tertiary boundary
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Genomics, biogeography, and the diversification of placental mammals
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Retroposon analysis and recent geological data suggest near-simultaneous divergence of the three superorders of mammals
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Resolving conflict in eutherian mammal phylogeny using phylogenomics and the multispecies coalescent model
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An Empirical Assessment of Long-Branch Attraction Artefacts in Deep Eukaryotic Phylogenomics
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The Adequacy of Morphology for Reconstructing the Early History of Placental Mammals
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
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TimeTree: a public knowledge-base of divergence times among organisms
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Biopython: freely available Python tools for computational molecular biology and bioinformatics
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
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S uper T riplets : a triplet-based supertree approach to phylogenomics
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A New Database (GCD) on Genome Composition for Eukaryote and Prokaryote Genome Sequences and Their Initial Analyses
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The effect of deleterious mutations on neutral molecular variation.
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GC-Content Evolution in Mammalian Genomes: The Biased Gene Conversion Hypothesis
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Genome-Scale Phylogeny and the Detection of Systematic Biases
inferredcites →https://doi.org/10.1093/molbev/msm136openalex-snapshot
Phylogenomic Data Analyses Provide Evidence that Xenarthra and Afrotheria Are Sister Groups
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Confirming the Phylogeny of Mammals by Use of Large Comparative Sequence Data Sets
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Dynamic Evolution of Base Composition: Causes and Consequences in Avian Phylogenomics
inferredcites →https://doi.org/10.1093/molbev/msr279openalex-snapshot
The Role of GC-Biased Gene Conversion in Shaping the Fastest Evolving Regions of the Human Genome
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Retroposon Insertion Patterns of Neoavian Birds: Strong Evidence for an Extensive Incomplete Lineage Sorting Era
inferredcites →https://doi.org/10.1093/molbev/mss059openalex-snapshot
Efficient Selection of Branch-Specific Models of Sequence Evolution
inferredcites →https://doi.org/10.1093/molbev/mss211openalex-snapshot
Genomic Evidence for Large, Long-Lived Ancestors to Placental Mammals
inferredcites →https://doi.org/10.1093/molbev/mss239openalex-snapshot
Phylogenetic Patterns of GC-Biased Gene Conversion in Placental Mammals and the Evolutionary Dynamics of Recombination Landscapes
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
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Summarizing and correcting the GC content bias in high-throughput sequencing
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003886openalex-snapshot
Local Rates of Recombination Are Positively Correlated with GC Content in the Human Genome
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003989openalex-snapshot
Molecular Phylogeny of Living Xenarthrans and the Impact of Character and Taxon Sampling on the Placental Tree Rooting
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004164openalex-snapshot
Rodent Phylogeny and a Timescale for the Evolution of Glires: Evidence from an Extensive Taxon Sampling Using Three Nuclear Genes
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Relationships between gene trees and species trees.
inferredcites →https://doi.org/10.1093/sysbio/syp031openalex-snapshot
Estimating Species Phylogenies Using Coalescence Times among Sequences
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Recombination and mammalian genome evolution
inferredcites →https://doi.org/10.1101/gr.090647.108openalex-snapshot
Mosaic retroposon insertion patterns in placental mammals
inferredcites →https://doi.org/10.1101/gr.104372.109openalex-snapshot
Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes
inferredcites →https://doi.org/10.1101/gr.114751.110openalex-snapshot
Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection
inferredcites →https://doi.org/10.1101/gr.124123.111openalex-snapshot
Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome
inferredcites →https://doi.org/10.1101/gr.125864.111openalex-snapshot
Ultraconserved elements are novel phylogenomic markers that resolve placental mammal phylogeny when combined with species-tree analysis
inferredcites →https://doi.org/10.1101/gr.5918807openalex-snapshot
Using genomic data to unravel the root of the placental mammal phylogeny
inferredcites →https://doi.org/10.1109/ipdps.2006.1639535openalex-snapshot
Phylogenetic models of rate heterogeneity: a high performance computing perspective
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SPECIATIONAL HISTORY OF AUSTRALIAN GRASS FINCHES (POEPHILA) INFERRED FROM THIRTY GENE TREES
inferredcites →https://doi.org/10.1126/science.1086292openalex-snapshot
Phylogenomics: Intersection of Evolution and Genomics
inferredcites →https://doi.org/10.1126/science.1211028openalex-snapshot
Impacts of the Cretaceous Terrestrial Revolution and KPg Extinction on Mammal Diversification
inferredcites →https://doi.org/10.1126/science.1229237openalex-snapshot
The Placental Mammal Ancestor and the Post–K-Pg Radiation of Placentals
inferredcites →https://doi.org/10.1126/science.4001930openalex-snapshot
The Mosaic Genome of Warm-Blooded Vertebrates
inferredcites →https://doi.org/10.1186/1471-2105-7-188openalex-snapshot
Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics
inferredcites →https://doi.org/10.1186/1471-2148-10-302openalex-snapshot
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
inferredcites →https://doi.org/10.1186/1471-2148-11-181openalex-snapshot
Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)
inferredcites →https://doi.org/10.1186/1471-2148-7-241openalex-snapshot
OrthoMaM: A database of orthologous genomic markers for placental mammal phylogenetics
inferredcites →https://doi.org/10.1186/1471-2148-7-8openalex-snapshot
Site specific rates of mitochondrial genomes and the phylogeny of eutheria.
inferredcites →https://doi.org/10.1186/1471-2148-8-162openalex-snapshot
Resolution among major placental mammal interordinal relationships with genome data imply that speciation influenced their earliest radiations
inferredcites →https://doi.org/10.1186/gb-2007-8-9-r199openalex-snapshot
Rooting the eutherian tree: the power and pitfalls of phylogenomics
inferredcites →https://doi.org/10.1186/gb-2011-12-2-r18openalex-snapshot
Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries
inferredcites →https://doi.org/10.1371/journal.pbio.0040091openalex-snapshot
Retroposed Elements as Archives for the Evolutionary History of Placental Mammals
inferredcites →https://doi.org/10.1371/journal.pbio.0040180openalex-snapshot
High Guanine and Cytosine Content Increases mRNA Levels in Mammalian Cells
inferredcites →https://doi.org/10.1371/journal.pbio.1000028openalex-snapshot
Mutation Patterns in the Human Genome: More Variable Than Expected
inferredcites →https://doi.org/10.1371/journal.pgen.0020068openalex-snapshot
Discordance of Species Trees with Their Most Likely Gene Trees
inferredcites →https://doi.org/10.1371/journal.pgen.0020173openalex-snapshot
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1371/journal.pgen.0030002openalex-snapshot
Early History of Mammals Is Elucidated with the ENCODE Multiple Species Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pgen.1000071openalex-snapshot
The Impact of Recombination on Nucleotide Substitutions in the Human Genome
inferredcites →https://doi.org/10.1371/journal.pone.0022594openalex-snapshot
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
inferredcites →https://doi.org/10.1371/journal.pone.0024480openalex-snapshot
Late Replicating Domains Are Highly Recombining in Females but Have Low Male Recombination Rates: Implications for Isochore Evolution
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Prdm9, a Major Determinant of Meiotic Recombination Hotspots, Is Not Functional in Dogs and Their Wild Relatives, Wolves and Coyotes
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Fast and Robust Characterization of Time-Heterogeneous Sequence Evolutionary Processes Using Substitution Mapping
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Recombination and phylogeny: effects and detection
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Length and GC-Biases During Sequencing Library Amplification: A Comparison of Various Polymerase-Buffer Systems with Ancient and Modern DNA Sequencing Libraries
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Patterns of Morphological Variation of Extant Sloth Skulls and their Implication for Future Conservation Efforts
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GC‐biased gene conversion links the recombination landscape and demography to genomic base composition
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Molecular Evidence on Primate Origins and Evolution
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When xenarthrans had enamel: insights on the evolution of their hypsodonty and paleontological support for independent evolution in armadillos
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Mitochondrial data are not suitable for resolving placental mammal phylogeny
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Molecular Phylogenetics of Bradypus (Three-Toed Sloth, Pilosa: Bradypodidae, Mammalia) and Phylogeography of Bradypus variegatus (Brown-Throated Three-Toed Sloth) with Mitochondrial Gene Sequences
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Evolution of Transmissible Spongiform Encephalopathies and the Prion Protein Gene (PRNP) in Mammals
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Xenarthran Nervous Systems
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Maximizing Power in Phylogenetics and Phylogenomics: A Perspective Illuminated by Fungal Big Data
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A Comprehensive and Dated Phylogenomic Analysis of Butterflies
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When the ribosomal DNA does not tell the truth: The case of the taxonomic position of Kurtia argillacea, an ericoid mycorrhizal fungus residing among Hymenochaetales
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Patterns and effects of GC3 heterogeneity and parsimony informative sites on the phylogenetic tree of genes
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Recombination-aware phylogenomics
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Epiblast morphogenesis before gastrulation
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Phylogenetic affinity of tree shrews to Glires is attributed to fast evolution rate
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Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia)
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Phylogenetic position of the bee genera Ancyla and Tarsalia (Hymenoptera: Apidae): A remarkable base compositional bias and an early Paleogene geodispersal from North America to the Old World
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Phylogenomic analyses resolve an ancient trichotomy at the base of Ischyropsalidoidea (Arachnida, Opiliones) despite high levels of gene tree conflict and unequal minority resolution frequencies
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Macrosystematics of eutherian mammals combining HTS data to expand taxon coverage
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DiscoVista: Interpretable visualizations of gene tree discordance
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Back to the roots: Reducing evolutionary rate heterogeneity among sequences gives support for the early morphological hypothesis of the root of Siluriformes (Teleostei: Ostariophysi)
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Improving phylogenetic inference of core Chlorophyta using chloroplast sequences with strong phylogenetic signals and heterogeneous models
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Compositional heterogeneity and outgroup choice influence the internal phylogeny of the ants
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Post K-Pg diversification of the mammalian order Eulipotyphla as suggested by phylogenomic analyses of ultra-conserved elements
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Killer whales differentiating in geographic sympatry facilitated by divergent behavioural traditions
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Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
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Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES
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A Genome-Scale Investigation of How Sequence, Function, and Tree-Based Gene Properties Influence Phylogenetic Inference
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Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements
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Global Rate Variation in Bony Vertebrates
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Mitochondrial Architecture Rearrangements Produce Asymmetrical Nonadaptive Mutational Pressures That Subvert the Phylogenetic Reconstruction in Isopoda
inferred← citeshttps://doi.org/10.1093/isd/ixaa009openalex-snapshot
Phylogenomics of the Leaf-Footed Bug Subfamily Coreinae (Hemiptera: Coreidae)
inferred← citeshttps://doi.org/10.1093/jhered/esx089openalex-snapshot
Pinniped Diphyly and Bat Triphyly: More Homology Errors Drive Conflicts in the Mammalian Tree
inferred← citeshttps://doi.org/10.1093/jhered/esz076openalex-snapshot
ILS-Aware Analysis of Low-Homoplasy Retroelement Insertions: Inference of Species Trees and Introgression Using Quartets
inferred← citeshttps://doi.org/10.1093/jmammal/gyv073openalex-snapshot
Paleogene Xenarthra and the evolution of South American mammals
inferred← citeshttps://doi.org/10.1093/jmammal/gyv077openalex-snapshot
Genetic diversity in Xenarthra and its relevance to patterns of neotropical biodiversity
inferred← citeshttps://doi.org/10.1093/molbev/msaa114openalex-snapshot
Phylogenetic Reconstruction Based on Synteny Block and Gene Adjacencies
inferred← citeshttps://doi.org/10.1093/molbev/msaa251openalex-snapshot
Interrogating Genomic-Scale Data to Resolve Recalcitrant Nodes in the Spider Tree of Life
inferred← citeshttps://doi.org/10.1093/molbev/msae250openalex-snapshot
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group
inferred← citeshttps://doi.org/10.1093/molbev/mst118openalex-snapshot
Making the Impossible Possible: Rooting the Tree of Placental Mammals
inferred← citeshttps://doi.org/10.1093/molbev/msu132openalex-snapshot
OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals
inferred← citeshttps://doi.org/10.1093/molbev/msu329openalex-snapshot
How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats
inferred← citeshttps://doi.org/10.1093/molbev/msv091openalex-snapshot
Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?
inferred← citeshttps://doi.org/10.1093/molbev/msv250openalex-snapshot
Shotgun Mitogenomics Provides a Reference Phylogenetic Framework and Timescale for Living Xenarthrans
inferred← citeshttps://doi.org/10.1093/molbev/msv258openalex-snapshot
Phylogenomics Controlling for Base Compositional Bias Reveals a Single Origin of Eusociality in Corbiculate Bees
inferred← citeshttps://doi.org/10.1093/molbev/msw098openalex-snapshot
Controlling for Phylogenetic Relatedness and Evolutionary Rates Improves the Discovery of Associations Between Species’ Phenotypic and Genomic Differences
inferred← citeshttps://doi.org/10.1093/molbev/msx286openalex-snapshot
P3: Phylogenetic Posterior Prediction in RevBayes
inferred← citeshttps://doi.org/10.1093/molbev/msz139openalex-snapshot
Recombination-Aware Phylogenomics Reveals the Structured Genomic Landscape of Hybridizing Cat Species
inferred← citeshttps://doi.org/10.1093/molbev/msz307openalex-snapshot
Deep Residual Neural Networks Resolve Quartet Molecular Phylogenies
inferred← citeshttps://doi.org/10.1093/sysbio/syaa008openalex-snapshot
The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets
inferred← citeshttps://doi.org/10.1093/sysbio/syae065openalex-snapshot
Robustness of divergence time estimation despite gene tree estimation error: a case study of fireflies (Coleoptera: Lampyridae)
inferred← citeshttps://doi.org/10.1093/sysbio/syag055openalex-snapshot
The Y Chromosome Is a Reliable Marker for Deep-Time Phylogenetic Inference
inferred← citeshttps://doi.org/10.1093/sysbio/syt073openalex-snapshot
Conserved Genes, Sampling Error, and Phylogenomic Inference
inferred← citeshttps://doi.org/10.1093/sysbio/syu053openalex-snapshot
Phylogenetics and the Human Microbiome
inferred← citeshttps://doi.org/10.1093/sysbio/syu082openalex-snapshot
A Bayesian Supertree Model for Genome-Wide Species Tree Reconstruction
inferred← citeshttps://doi.org/10.1093/sysbio/syv059openalex-snapshot
Selecting Question-Specific Genes to Reduce Incongruence in Phylogenomics: A Case Study of Jawed Vertebrate Backbone Phylogeny
inferred← citeshttps://doi.org/10.1093/sysbio/syw039openalex-snapshot
Measuring Stratigraphic Congruence Across Trees, Higher Taxa, and Time
inferred← citeshttps://doi.org/10.1093/sysbio/syw057openalex-snapshot
The Identification of the Closest Living Relative(s) of Tetrapods: Phylogenomic Lessons for Resolving Short Ancient Internodes
inferred← citeshttps://doi.org/10.1093/sysbio/syw082openalex-snapshot
Incomplete Lineage Sorting in Mammalian Phylogenomics
inferred← citeshttps://doi.org/10.1093/sysbio/syx038openalex-snapshot
Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes
inferred← citeshttps://doi.org/10.1093/sysbio/syx041openalex-snapshot
Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling
inferred← citeshttps://doi.org/10.1093/sysbio/syx058openalex-snapshot
Conserved Nonexonic Elements: A Novel Class of Marker for Phylogenomics
inferred← citeshttps://doi.org/10.1093/sysbio/syx076openalex-snapshot
Analysis of Phylogenomic Tree Space Resolves Relationships Among Marsupial Families
inferred← citeshttps://doi.org/10.1093/sysbio/syy043openalex-snapshot
Analyzing Contentious Relationships and Outlier Genes in Phylogenomics
inferred← citeshttps://doi.org/10.1098/rstb.2015.0140openalex-snapshot
Mammal madness: is the mammal tree of life not yet resolved?
inferred← citeshttps://doi.org/10.1101/002667openalex-snapshot
The immunologic V-gene repertoire in mammals
inferred← citeshttps://doi.org/10.1101/068957openalex-snapshot
Phylogenomic Analysis of Ants, Bees and Stinging Wasps: Improved Taxon Sampling Enhances Understanding of Hymenopteran Evolution
inferred← citeshttps://doi.org/10.1101/2021.11.18.469131openalex-snapshot
Interrogating Genomic Data in the Phylogenetic Placement of Treeshrews Reveals Potential Sources of Conflict
inferred← citeshttps://doi.org/10.1101/2021.11.19.469195openalex-snapshot
A Time-calibrated Firefly (Coleoptera: Lampyridae) Phylogeny: Using Genomic Data for Divergence Time Estimation
inferred← citeshttps://doi.org/10.1101/2022.08.10.503388openalex-snapshot
A genomic timescale for placental mammal evolution
inferred← citeshttps://doi.org/10.1101/2023.12.07.570590openalex-snapshot
Phylogenomics reveals an almost perfect polytomy among the almost ungulates ( Paenungulata )
inferred← citeshttps://doi.org/10.1101/423996openalex-snapshot
Coalescent-based phylogenetic inference from genes with unequivocal historical signal suggests a polytomy at the root of the placental mammal tree of life
inferred← citeshttps://doi.org/10.1101/485904openalex-snapshot
Recombination-aware phylogenomics unravels the complex divergence of hybridizing species.
inferred← citeshttps://doi.org/10.1101/709477openalex-snapshot
An ABBA-BABA Test for Introgression Using Retroposon Insertion Data
inferred← citeshttps://doi.org/10.1101/860809openalex-snapshot
The Multispecies Coalescent Model Outperforms Concatenation across Diverse Phylogenomic Data Sets
inferred← citeshttps://doi.org/10.1101/gr.278546.123openalex-snapshot
Toward telomere-to-telomere cat genomes for precision medicine and conservation biology
inferred← citeshttps://doi.org/10.1111/cla.12170openalex-snapshot
Resolution of a concatenation/coalescence kerfuffle: partitioned coalescence support and a robust family‐level tree for Mammalia
inferred← citeshttps://doi.org/10.1111/cla.12232openalex-snapshot
When did the ancestor of true bugs become stinky? Disentangling the phylogenomics of Hemiptera–Heteroptera
inferred← citeshttps://doi.org/10.1111/geb.13141openalex-snapshot
The role of the Neotropics as a source of world tetrapod biodiversity
inferred← citeshttps://doi.org/10.1111/nph.16290openalex-snapshot
Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six subfamilies
inferred← citeshttps://doi.org/10.1111/nyas.12747openalex-snapshot
Estimating phylogenetic trees from genome‐scale data
inferred← citeshttps://doi.org/10.1111/syen.12381openalex-snapshot
Phylogenomics of Auchenorrhyncha (Insecta: Hemiptera) using transcriptomes: examining controversial relationships via degeneracy coding and interrogation of gene conflict
inferred← citeshttps://doi.org/10.1111/syen.70038openalex-snapshot
Exploring the phylogeny of the Leptanillinae (Hymenoptera: Formicidae) through high‐throughput sequencing and Bayesian total‐evidence inference, with accommodation of systematic bias
inferred← citeshttps://doi.org/10.1111/zsc.12213openalex-snapshot
The phylogenomic forest of bird trees contains a hard polytomy at the root of Neoaves
inferred← citeshttps://doi.org/10.1126/science.abl8189openalex-snapshot
A genomic timescale for placental mammal evolution
inferred← citeshttps://doi.org/10.1146/annurev-animal-061220-023149openalex-snapshot
Phylogenomics and the Genetic Architecture of the Placental Mammal Radiation
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-120213-091824openalex-snapshot
The Phylogeny and Evolution of Ants
inferred← citeshttps://doi.org/10.1152/jn.00851.2016openalex-snapshot
Orientation selectivity in the visual cortex of the nine-banded armadillo
inferred← citeshttps://doi.org/10.1152/physiol.00010.2015openalex-snapshot
The Hibernation Continuum: Physiological and Molecular Aspects of Metabolic Plasticity in Mammals
inferred← citeshttps://doi.org/10.1155/2014/639274openalex-snapshot
Placental Evolution within the Supraordinal Clades of Eutheria with the Perspective of Alternative Animal Models for Human Placentation
inferred← citeshttps://doi.org/10.1186/1471-2105-15-183openalex-snapshot
L.U.St: a tool for approximated maximum likelihood supertree reconstruction
inferred← citeshttps://doi.org/10.1186/preaccept-4747137171262766openalex-snapshot
Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition
inferred← citeshttps://doi.org/10.1186/s12859-015-0632-yopenalex-snapshot
A composite genome approach to identify phylogenetically informative data from next-generation sequencing
inferred← citeshttps://doi.org/10.1186/s12862-014-0169-0openalex-snapshot
Phylogenetic informativeness reconciles ray-finned fish molecular divergence times
inferred← citeshttps://doi.org/10.1186/s12862-015-0431-0openalex-snapshot
Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta
inferred← citeshttps://doi.org/10.1186/s12862-016-0837-3openalex-snapshot
PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R
inferred← citeshttps://doi.org/10.1186/s12862-018-1159-4openalex-snapshot
Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour
inferred← citeshttps://doi.org/10.1186/s12864-020-6519-yopenalex-snapshot
STELAR: a statistically consistent coalescent-based species tree estimation method by maximizing triplet consistency
inferred← citeshttps://doi.org/10.1186/s12870-022-03491-2openalex-snapshot
Towards the plastome evolution and phylogeny of Cycas L. (Cycadaceae): molecular-morphology discordance and gene tree space analysis
inferred← citeshttps://doi.org/10.1186/s13007-024-01210-6openalex-snapshot
GeCKO: user-friendly workflows for genotyping complex genomes using target enrichment capture. A use case on the large tetraploid durum wheat genome
inferred← citeshttps://doi.org/10.1186/s13062-024-00508-8openalex-snapshot
Novel crossover and recombination hotspots massively spread across primate genomes
inferred← citeshttps://doi.org/10.1186/s40246-022-00429-5openalex-snapshot
Placing human gene families into their evolutionary context
inferred← citeshttps://doi.org/10.1371/journal.pbio.2005293openalex-snapshot
Loss of RXFP2 and INSL3 genes in Afrotheria shows that testicular descent is the ancestral condition in placental mammals
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000494openalex-snapshot
Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation
inferred← citeshttps://doi.org/10.1371/journal.pone.0130188openalex-snapshot
Evolution of the Vertebrate Resistin Gene Family
inferred← citeshttps://doi.org/10.13918/j.issn.2095-8137.2015.1.1openalex-snapshot
Genomic organization and evolution of ruminant lysozyme c genes.
inferred← citeshttps://doi.org/10.1515/hsz-2014-0122openalex-snapshot
Evolution of Klk4 and enamel maturation in eutherians
inferred← citeshttps://doi.org/10.1525/abt.2016.78.1.24openalex-snapshot
Bridging Darwin's Origin of Species & Wegener's Origin of Continents and Oceans:
inferred← citeshttps://doi.org/10.1534/genetics.119.302074openalex-snapshot
Quantifying GC-Biased Gene Conversion in Great Ape Genomes Using Polymorphism-Aware Models
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3859914/v1openalex-snapshot
Crossover and recombination hotspots massively spread across human genome
inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2020.365openalex-snapshot
Comparative mitogenome phylogeography of two anteater genera (Tamandua and Myrmecophaga; Myrmecophagidae, Xenarthra): Evidence of discrepant evolutionary traits
inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2023.189openalex-snapshot
Improved mammalian family phylogeny using gap-rare multiple sequence alignment: A timetree of extant placentals and marsupials
inferred← citeshttps://doi.org/10.26515/rzsi/v122/i1/2022/165748openalex-snapshot
An updated checklist of Mammals of Uttarakhand, India
inferred← citeshttps://doi.org/10.3161/00034541anz2023.73.2.010openalex-snapshot
Different Perspectives on the Phylogeny of Mordellidae (Coleoptera) Provided by Two Regions of the mtDNA COI Gene
inferred← citeshttps://doi.org/10.33448/rsd-v11i14.36739openalex-snapshot
Exceptional preservation of nonmineralized biomaterials in Cenozoic fossils of the Mammalia clade
inferred← citeshttps://doi.org/10.3389/fgene.2017.00016openalex-snapshot
Analytical Biases Associated with GC-Content in Molecular Evolution
inferred← citeshttps://doi.org/10.3389/fgene.2019.01241openalex-snapshot
Evolutionary Models for the Diversification of Placental Mammals Across the KPg Boundary
inferred← citeshttps://doi.org/10.3390/biology14081056openalex-snapshot
Immune Tuning in Extreme Environments: Protein Citrullinome and Extracellular Vesicle Signatures Comparing Hibernating Versus Active States in the Heterothermic and Heterometabolic Tenrec (Tenrec ecaudatus)
inferred← citeshttps://doi.org/10.3390/computation3020177openalex-snapshot
A Guide to Phylogenetic Reconstruction Using Heterogeneous Models—A Case Study from the Root of the Placental Mammal Tree
inferred← citeshttps://doi.org/10.3390/genes13071167openalex-snapshot
Phylogenomic Coalescent Analyses of Avian Retroelements Infer Zero-Length Branches at the Base of Neoaves, Emergent Support for Controversial Clades, and Ancient Introgressive Hybridization in Afroaves
inferred← citeshttps://doi.org/10.3390/ijms20051072openalex-snapshot
Gene Selection and Evolutionary Modeling Affect Phylogenomic Inference of Neuropterida Based on Transcriptome Data
inferred← citeshttps://doi.org/10.4137/ebo.s22448openalex-snapshot
Phylotranscriptomic Analysis Based on Coalescence was Less Influenced by the Evolving Rates and the Number of Genes: A Case Study in Ericales
inferred← citeshttps://doi.org/10.64898/2026.03.30.714540openalex-snapshot
Signal, noise, and bias in phylogenetic inference: potential and limits to the resolution of phylogenetic trees in the phylogenomic era
inferred← citeshttps://doi.org/10.70675/1b3ecccezb0ffz4b4bzb455z22be74952d90openalex-snapshot
Les points de vue des gènes orthologues et paralogues sur la génomique des rongeurs : phylogénomique et évolution des récepteurs olfactifs
inferred← citeshttps://doi.org/10.70675/32e9bfc5z8859z4fdfz8018za9965054c069openalex-snapshot
Reconstruction conjointe de l’ordre des gènes de génomes actuels et ancestraux et de leur évolution structurale dans un cadre phylogénétique
inferred← citeshttps://doi.org/10.70675/8e389233z455fz4063z9694za332d37139a1openalex-snapshot
Exploration of internal anatomy and morphological integration in the skull of cingulates (Xenarthra, Mammalia) and their phylogenetic implications
inferred← citeshttps://doi.org/10.70675/bac83b6dzc7e0z4ba8za027zb74924c3dfe1openalex-snapshot
Interaction entre la bactérie endosymbiotique Wolbachia et les moustiques du complexe Culex pipiens : Des génomes bactériens à la structuration des populations d’hôtes
inferred← citeshttps://doi.org/10.7554/elife.74297openalex-snapshot
Gene expression phylogenies and ancestral transcriptome reconstruction resolves major transitions in the origins of pregnancy
inferred← citeshttps://doi.org/10.7554/elife.94563openalex-snapshot
Pervasive relaxed selection on spermatogenesis genes coincident with the evolution of polygyny in gorillas
inferred← citeshttps://doi.org/10.7554/elife.94563.1openalex-snapshot
Pervasive relaxed selection on spermatogenesis genes coincident with the evolution of polygyny in gorillas
inferred← citeshttps://doi.org/10.7554/elife.94563.3openalex-snapshot
Pervasive relaxed selection on spermatogenesis genes coincident with the evolution of polygyny in gorillas
inferred← citeshttps://doi.org/10.7717/peerj.18314openalex-snapshot
Comparative mitogenomics of Cheiracanthium species (Araneae: Cheiracanthiidae) with phylogenetic implication and evolutionary insights
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