On the public citation graph

FUN-LDA: A LATENT DIRICHLET ALLOCATION MODEL FOR PREDICTING TISSUE-SPECIFIC FUNCTIONAL EFFECTS OF NONCODING VARIATION

0 signed · 85 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1001/jamaneurol.2016.0150openalex-snapshot

Association Between Genetic Traits for Immune-Mediated Diseases and Alzheimer Disease

inferredcites →https://doi.org/10.1002/gepi.20310openalex-snapshot

A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms

inferredcites →https://doi.org/10.1016/j.ajhg.2015.01.004openalex-snapshot

Identification of Functional Variants for Cleft Lip with or without Cleft Palate in or near PAX7, FGFR2, and NOG by Targeted Sequencing of GWAS Loci

inferredcites →https://doi.org/10.1016/j.cell.2016.04.027openalex-snapshot

Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay

inferredcites →https://doi.org/10.1016/s0140-6736(12)62129-1openalex-snapshot

Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis

inferredcites →https://doi.org/10.1016/s1474-4422(14)70171-1openalex-snapshot

Genetic determinants of common epilepsies: a meta-analysis of genome-wide association studies

inferredcites →https://doi.org/10.1038/cr.2011.22openalex-snapshot

Regulation of chromatin by histone modifications

inferredcites →https://doi.org/10.1038/jid.2015.402openalex-snapshot

Functional Interpretation of Genome-Wide Association Study Evidence in Alopecia Areata

inferredcites →https://doi.org/10.1038/nature05295openalex-snapshot

In vivo enhancer analysis of human conserved non-coding sequences

inferredcites →https://doi.org/10.1038/nature07829openalex-snapshot

Histone modifications at human enhancers reflect global cell-type-specific gene expression

inferredcites →https://doi.org/10.1038/nature09266openalex-snapshot

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus

inferredcites →https://doi.org/10.1038/nature09270openalex-snapshot

Biological, clinical and population relevance of 95 loci for blood lipids

inferredcites →https://doi.org/10.1038/nature09410openalex-snapshot

Hundreds of variants clustered in genomic loci and biological pathways affect human height

inferredcites →https://doi.org/10.1038/nature10530openalex-snapshot

A high-resolution map of human evolutionary constraint using 29 mammals

inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot

An integrated encyclopedia of DNA elements in the human genome

inferredcites →https://doi.org/10.1038/nature11582openalex-snapshot

Host–microbe interactions have shaped the genetic architecture of inflammatory bowel disease

inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot

An integrated map of genetic variation from 1,092 human genomes

inferredcites →https://doi.org/10.1038/nature12873openalex-snapshot

Genetics of rheumatoid arthritis contributes to biology and drug discovery

inferredcites →https://doi.org/10.1038/nature13545openalex-snapshot

Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche

inferredcites →https://doi.org/10.1038/nature13595openalex-snapshot

Biological insights from 108 schizophrenia-associated genetic loci

inferredcites →https://doi.org/10.1038/nature14177openalex-snapshot

Genetic studies of body mass index yield new insights for obesity biology

inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot

Integrative analysis of 111 reference human epigenomes

inferredcites →https://doi.org/10.1038/nature14252openalex-snapshot

Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease

inferredcites →https://doi.org/10.1038/nature17939openalex-snapshot

Parkinson-associated risk variant in distal enhancer of α-synuclein modulates target gene expression

inferredcites →https://doi.org/10.1038/nbt.3157openalex-snapshot

Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues

inferredcites →https://doi.org/10.1038/ncomms6966openalex-snapshot

Genome-wide meta-analysis in alopecia areata resolves HLA associations and reveals two new susceptibility loci

inferredcites →https://doi.org/10.1038/ng.2274openalex-snapshot

A genome-wide approach accounting for body mass index identifies genetic variants influencing fasting glycemic traits and insulin resistance

inferredcites →https://doi.org/10.1038/ng.2383openalex-snapshot

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

inferredcites →https://doi.org/10.1038/ng.2802openalex-snapshot

Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease

inferredcites →https://doi.org/10.1038/ng.2892openalex-snapshot

A general framework for estimating the relative pathogenicity of human genetic variants

inferredcites →https://doi.org/10.1038/ng.2991openalex-snapshot

A molecular basis for classic blond hair color in Europeans

inferredcites →https://doi.org/10.1038/ng.3118openalex-snapshot

Discovery of new risk loci for IgA nephropathy implicates genes involved in immunity against intestinal pathogens

inferredcites →https://doi.org/10.1038/ng.3404openalex-snapshot

Partitioning heritability by functional annotation using genome-wide association summary statistics

inferredcites →https://doi.org/10.1038/ng.3406openalex-snapshot

An atlas of genetic correlations across human diseases and traits

inferredcites →https://doi.org/10.1038/ng.3477openalex-snapshot

A spectral approach integrating functional genomic annotations for coding and noncoding variants

inferredcites →https://doi.org/10.1038/ng.3927openalex-snapshot

A common intronic variant of PARP1 confers melanoma risk and mediates melanocyte growth via regulation of MITF

inferredcites →https://doi.org/10.1038/ng.3979openalex-snapshot

Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues

inferredcites →https://doi.org/10.1038/ng.571openalex-snapshot

Genome-wide meta-analyses identify multiple loci associated with smoking behavior

inferredcites →https://doi.org/10.1038/ng.686openalex-snapshot

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

inferredcites →https://doi.org/10.1038/ng.784openalex-snapshot

Large-scale association analysis identifies 13 new susceptibility loci for coronary artery disease

inferredcites →https://doi.org/10.1038/ng.943openalex-snapshot

Large-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4

inferredcites →https://doi.org/10.1038/nm.3645openalex-snapshot

Alopecia areata is driven by cytotoxic T lymphocytes and is reversed by JAK inhibition

inferredcites →https://doi.org/10.1038/nmeth.1906openalex-snapshot

ChromHMM: automating chromatin-state discovery and characterization

inferredcites →https://doi.org/10.1038/nmeth.1937openalex-snapshot

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

inferredcites →https://doi.org/10.1038/nrg.2015.17openalex-snapshot

Role of non-coding sequence variants in cancer

inferredcites →https://doi.org/10.1073/pnas.1318948111openalex-snapshot

Defining functional DNA elements in the human genome

inferredcites →https://doi.org/10.1093/bioinformatics/btq405openalex-snapshot

Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites

inferredcites →https://doi.org/10.1093/biostatistics/kxs014openalex-snapshot

Optimal tests for rare variant effects in sequencing association studies

inferredcites →https://doi.org/10.1093/hmg/ddu289openalex-snapshot

Human skin color is influenced by an intergenic DNA polymorphism regulating transcription of the nearby BNC2 pigmentation gene

inferredcites →https://doi.org/10.1093/nar/gkw278openalex-snapshot

Jointly characterizing epigenetic dynamics across multiple human cell types

inferredcites →https://doi.org/10.1093/nar/gkx659openalex-snapshot

Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation

inferredcites →https://doi.org/10.1101/086025openalex-snapshot

A unified encyclopedia of human functional DNA elements through fully automated annotation of 164 human cell types

inferredcites →https://doi.org/10.1101/gr.144899.112openalex-snapshot

Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay

inferredcites →https://doi.org/10.1101/gr.190165.115openalex-snapshot

Epigenomics and the structure of the living genome

inferredcites →https://doi.org/10.1111/j.1582-4934.2011.01390.xopenalex-snapshot

Production of monocytic cells from bone marrow stem cells: therapeutic usage in Alzheimer’s disease

inferredcites →https://doi.org/10.1126/science.1130471openalex-snapshot

Prevention of Brca1 -Mediated Mammary Tumorigenesis in Mice by a Progesterone Antagonist

inferredcites →https://doi.org/10.1126/science.1156409openalex-snapshot

Genetic Mapping in Human Disease

inferredcites →https://doi.org/10.1126/science.1235488openalex-snapshot

GWAS of 126,559 Individuals Identifies Genetic Variants Associated with Educational Attainment

inferredcites →https://doi.org/10.1126/science.1235587openalex-snapshot

Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics

inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

inferredcites →https://doi.org/10.1161/circulationaha.114.012438openalex-snapshot

Low Cardiac Index Is Associated With Incident Dementia and Alzheimer Disease

inferredcites →https://doi.org/10.1172/jci73140openalex-snapshot

A common genetic variant within SCN10A modulates cardiac SCN5A expression

inferredcites →https://doi.org/10.1186/1471-2105-14-s5-s4openalex-snapshot

Discovering and mapping chromatin states using a tree hidden Markov model

inferredcites →https://doi.org/10.1186/preaccept-1739683221127290openalex-snapshot

FunSeq2: A framework for prioritizing noncoding regulatory variants in cancer

inferredcites →https://doi.org/10.1186/s13059-015-0598-0openalex-snapshot

Spectacle: fast chromatin state annotation using spectral learning

inferredcites →https://doi.org/10.1186/s13059-015-0708-zopenalex-snapshot

Chromatin segmentation based on a probabilistic model for read counts explains a large portion of the epigenome

inferredcites →https://doi.org/10.1201/9781315140919openalex-snapshot

Density Estimation for Statistics and Data Analysis

inferredcites →https://doi.org/10.1371/journal.pgen.1003709openalex-snapshot

Genic Intolerance to Functional Variation and the Interpretation of Personal Genomes

inferredcites →https://doi.org/10.1371/journal.pgen.1004722openalex-snapshot

Integrating Functional Data to Prioritize Causal Variants in Statistical Fine-Mapping Studies

inferredcites →https://doi.org/10.1371/journal.pgen.1004729openalex-snapshot

Identification of Rare Causal Variants in Sequence-Based Studies: Methods and Applications to VPS13B, a Gene Involved in Cohen Syndrome and Autism

inferredcites →https://doi.org/10.1371/journal.pgen.1005947openalex-snapshot

Integrative Tissue-Specific Functional Annotations in the Human Genome Provide Novel Insights on Many Complex Traits and Improve Signal Prioritization in Genome Wide Association Studies

inferredcites →https://doi.org/10.1371/journal.pone.0169249openalex-snapshot

Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN

inferredcites →https://doi.org/10.3109/15622975.2012.666359openalex-snapshot

Functional investigation of a schizophrenia GWAS signal at the CDC42 gene

inferredcites →https://doi.org/10.48550/arxiv.1301.6676openalex-snapshot

Inferring Parameters and Structure of Latent Variable Models by Variational Bayes

inferredcites →https://doi.org/10.5555/944919.944937openalex-snapshot

Latent dirichlet allocation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/sim.9769openalex-snapshot

Supervised structural learning of semiparametric regression on high‐dimensional correlated covariates with applications to eQTL studies

inferred← citeshttps://doi.org/10.1007/978-3-031-10461-9_50openalex-snapshot

ALBU: An Approximate Loopy Belief Message Passing Algorithm for LDA for Small Data Sets

inferred← citeshttps://doi.org/10.1038/s41467-018-04558-1openalex-snapshot

Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood

inferred← citeshttps://doi.org/10.1038/s41467-018-07349-wopenalex-snapshot

A semi-supervised approach for predicting cell-type specific functional consequences of non-coding variation using MPRAs

inferred← citeshttps://doi.org/10.1038/s41588-018-0081-4openalex-snapshot

Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types

inferred← citeshttps://doi.org/10.1093/biomet/asz010openalex-snapshot

Sufficient direction factor model and its application to gene expression quantitative trait loci discovery

inferred← citeshttps://doi.org/10.1109/icitbs.2018.00175openalex-snapshot

Hot News Mining Method Based on Intelligent Computing

inferred← citeshttps://doi.org/10.1371/journal.pgen.1007186openalex-snapshot

Identifying and exploiting trait-relevant tissues with multiple functional annotations in genome-wide association studies

inferred← citeshttps://doi.org/10.32604/cmc.2020.06431openalex-snapshot

News Text Topic Clustering Optimized Method Based on TF-IDF Algorithm on Spark

inferred← citeshttps://doi.org/10.48550/arxiv.2110.00635openalex-snapshot

ALBU: An approximate Loopy Belief message passing algorithm for LDA to improve performance on small data sets

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.