On the public citation graph

Comparative genomics and metagenomics analyses of endangered Père David’s deer ( Elaphurus davidianus ) provide insights into population recovery

0 signed · 74 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jmbi.1997.0951openalex-snapshot

Prediction of complete gene structures in human genomic DNA

inferredcites →https://doi.org/10.1007/s10529-011-0841-zopenalex-snapshot

Sequencing and de novo analysis of the Chinese Sika deer antler-tip transcriptome during the ossification stage using Illumina RNA-Seq technology

inferredcites →https://doi.org/10.1007/s11010-011-1209-3openalex-snapshot

De novo characterization of the antler tip of Chinese Sika deer transcriptome and analysis of gene expression related to rapid growth

inferredcites →https://doi.org/10.1016/j.biocon.2005.05.002openalex-snapshot

Genetics and extinction

inferredcites →https://doi.org/10.1016/j.cell.2014.03.054openalex-snapshot

Population Genomics Reveal Recent Speciation and Rapid Evolutionary Adaptation in Polar Bears

inferredcites →https://doi.org/10.1016/j.febslet.2008.01.065openalex-snapshot

Germ cell‐specific gene 1 targets testis‐specific poly(A) polymerase to the endoplasmic reticulum through protein–protein interactions

inferredcites →https://doi.org/10.1016/j.livsci.2014.05.034openalex-snapshot

Inbreeding and runs of homozygosity: A possible solution to an old problem

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0169-5347(02)02489-8openalex-snapshot

Inbreeding effects in wild populations

inferredcites →https://doi.org/10.1038/33136openalex-snapshot

Inbreeding and extinction in a butterfly metapopulation

inferredcites →https://doi.org/10.1038/35021035openalex-snapshot

Timing of the Last Glacial Maximum from observed sea-level minima

inferredcites →https://doi.org/10.1038/cr.2013.104openalex-snapshot

Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator

inferredcites →https://doi.org/10.1038/nature04072openalex-snapshot

Initial sequence of the chimpanzee genome and comparison with the human genome

inferredcites →https://doi.org/10.1038/nature08783openalex-snapshot

The cells and peripheral representation of sodium taste in mice

inferredcites →https://doi.org/10.1038/nature08832openalex-snapshot

Whole-genome resequencing reveals loci under selection during chicken domestication

inferredcites →https://doi.org/10.1038/nature10231openalex-snapshot

Inference of human population history from individual whole-genome sequences

inferredcites →https://doi.org/10.1038/ncomms3708openalex-snapshot

Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations

inferredcites →https://doi.org/10.1038/ncomms9285openalex-snapshot

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

inferredcites →https://doi.org/10.1038/ng.2343openalex-snapshot

The yak genome and adaptation to life at high altitude

inferredcites →https://doi.org/10.1038/ng.2494openalex-snapshot

Whole-genome sequencing of giant pandas provides insights into demographic history and local adaptation

inferredcites →https://doi.org/10.1038/ng.2835openalex-snapshot

Minke whale genome and aquatic adaptation in cetaceans

inferredcites →https://doi.org/10.1038/ng.3137openalex-snapshot

Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history

inferredcites →https://doi.org/10.1038/nm.2237openalex-snapshot

Bitter taste receptors on airway smooth muscle bronchodilate by localized calcium signaling and reverse obstruction

inferredcites →https://doi.org/10.1073/pnas.0407708101openalex-snapshot

Glyceraldehyde 3-phosphate dehydrogenase-S, a sperm-specific glycolytic enzyme, is required for sperm motility and male fertility

inferredcites →https://doi.org/10.1073/pnas.0701705104openalex-snapshot

More genes underwent positive selection in chimpanzee evolution than in human evolution

inferredcites →https://doi.org/10.1073/pnas.1217149109openalex-snapshot

Strong signatures of selection in the domestic pig genome

inferredcites →https://doi.org/10.1073/pnas.1306807110openalex-snapshot

Mosaic genome structure of the barley powdery mildew pathogen and conservation of transcriptional programs in divergent hosts

inferredcites →https://doi.org/10.1073/pnas.2136654100openalex-snapshot

Hyperactivated sperm motility driven by CatSper2 is required for fertilization

inferredcites →https://doi.org/10.1086/519795openalex-snapshot

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

inferredcites →https://doi.org/10.1093/bioinformatics/17.9.847openalex-snapshot

InterProScan – an integration platform for the signature-recognition methods in InterPro

inferredcites →https://doi.org/10.1093/bioinformatics/bth315openalex-snapshot

TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders

inferredcites →https://doi.org/10.1093/bioinformatics/bti1018openalex-snapshot

De novo identification of repeat families in large genomes

inferredcites →https://doi.org/10.1093/bioinformatics/bti610openalex-snapshot

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

inferredcites →https://doi.org/10.1093/bioinformatics/btl097openalex-snapshot

CAFE: a computational tool for the study of gene family evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btu494openalex-snapshot

STAMP: statistical analysis of taxonomic and functional profiles

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/nar/25.1.31openalex-snapshot

The SWISS-PROT protein sequence data bank and its supplement TrEMBL

inferredcites →https://doi.org/10.1093/nar/26.1.38openalex-snapshot

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998

inferredcites →https://doi.org/10.1093/nar/27.1.29openalex-snapshot

KEGG: Kyoto Encyclopedia of Genes and Genomes

inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot

Tandem repeats finder: a program to analyze DNA sequences

inferredcites →https://doi.org/10.1093/nar/28.1.27openalex-snapshot

KEGG: Kyoto Encyclopedia of Genes and Genomes

inferredcites →https://doi.org/10.1093/nar/28.1.45openalex-snapshot

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

inferredcites →https://doi.org/10.1093/nar/gkg509openalex-snapshot

SIFT: predicting amino acid changes that affect protein function

inferredcites →https://doi.org/10.1093/nar/gkl200openalex-snapshot

AUGUSTUS: ab initio prediction of alternative transcripts

inferredcites →https://doi.org/10.1093/nar/gkm286openalex-snapshot

LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

inferredcites →https://doi.org/10.1101/gr.097261.109openalex-snapshot

De novo assembly of human genomes with massively parallel short read sequencing

inferredcites →https://doi.org/10.1101/gr.1865504openalex-snapshot

GeneWise and Genomewise

inferredcites →https://doi.org/10.1101/gr.6743907openalex-snapshot

MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

inferredcites →https://doi.org/10.1111/j.1439-0272.1976.tb02126.xopenalex-snapshot

Ultrastructural Observations on the Differentiation of Spermatids in Man*

inferredcites →https://doi.org/10.1126/science.1155725openalex-snapshot

Evolution of Mammals and Their Gut Microbes

inferredcites →https://doi.org/10.1126/science.1198719openalex-snapshot

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

inferredcites →https://doi.org/10.1126/science.aaa3952openalex-snapshot

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

inferredcites →https://doi.org/10.1128/mcb.20.8.2865-2873.2000openalex-snapshot

Defects in Nuclear and Cytoskeletal Morphology and Mitochondrial Localization in Spermatozoa of Mice Lacking Nectin-2, a Component of Cell-Cell Adherens Junctions

inferredcites →https://doi.org/10.1146/annurev-animal-031412-103636openalex-snapshot

Conservation Genomics of Threatened Animal Species

inferredcites →https://doi.org/10.1146/annurev.immunol.15.1.749openalex-snapshot

CELLULAR RESPONSES TO INTERFERON-γ

inferredcites →https://doi.org/10.1152/physrev.1999.79.1.s23openalex-snapshot

Structure and Function of the CFTR Chloride Channel

inferredcites →https://doi.org/10.1159/000358224openalex-snapshot

Inbreeding Coefficient Estimation with Dense SNP Data: Comparison of Strategies and Application to HapMap III

inferredcites →https://doi.org/10.1186/1471-2105-9-386openalex-snapshot

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

inferredcites →https://doi.org/10.1186/2047-217x-1-11openalex-snapshot

GigaDB: announcing the GigaScience database

inferredcites →https://doi.org/10.1186/gb-2008-9-1-r7openalex-snapshot

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

inferredcites →https://doi.org/10.1186/gb-2014-15-1-r1openalex-snapshot

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

inferredcites →https://doi.org/10.1186/s13059-014-0557-1openalex-snapshot

Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species

inferredcites →https://doi.org/10.1371/journal.pgen.0030043openalex-snapshot

Hsp90 Selectively Modulates Phenotype in Vertebrate Development

inferredcites →https://doi.org/10.1371/journal.pone.0023623openalex-snapshot

Do Père David's Deer Lose Memories of Their Ancestral Predators?

inferredcites →https://doi.org/10.1371/journal.pone.0080813openalex-snapshot

Effect of Artificial Selection on Runs of Homozygosity in U.S. Holstein Cattle

inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10592-021-01419-1openalex-snapshot

Variation in the PRNP gene of Pere David’s deer (Elaphurus davidianus) may impact genetic vulnerability to chronic wasting disease

inferred← citeshttps://doi.org/10.1111/mec.15450openalex-snapshot

Demography and adaptation promoting evolutionary transitions in a mammalian genus that diversified during the Pleistocene

inferred← citeshttps://doi.org/10.1111/tpj.14744openalex-snapshot

Survival in the Tropics despite isolation, inbreeding and asexual reproduction: insights from the genome of the world’s southernmost poplar (Populus ilicifolia)

inferred← citeshttps://doi.org/10.1534/g3.117.300082openalex-snapshot

Genome-Wide SNP Discovery and Analysis of Genetic Diversity in Farmed Sika Deer (Cervus nippon) in Northeast China Using Double-Digest Restriction Site-Associated DNA Sequencing

inferred← citeshttps://doi.org/10.1534/g3.119.400001openalex-snapshot

Analysis of Genetic Diversity and Population Structure in Three Forest Musk Deer Captive Populations with Different Origins

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.