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Distant regulatory effects of genetic variation in multiple human tissues
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Fibrinogen as a key regulator of inflammation in disease
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Variants Near FOXE1 Are Associated with Hypothyroidism and Other Thyroid Conditions: Using Electronic Medical Records for Genome- and Phenome-wide Studies
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Integrated Genomic Characterization of Papillary Thyroid Carcinoma
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The Molecular Signatures Database Hallmark Gene Set Collection
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Genome-wide analysis of interferon regulatory factor I binding in primary human monocytes
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Posttranscriptional Regulation of Gene Expression by Piwi Proteins and piRNAs
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Regulation of LMP2 and TAP1 Genes by IRF-1 Explains the Paucity of CD8+ T Cells in IRF-1−/− Mice
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The Interferon Regulatory Transcription Factor IRF-1 Controls Positive and Negative Selection of CD8+ Thymocytes
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A mouse model for hereditary thyroid dysgenesis and cleft palate
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Pachytene piRNAs instruct massive mRNA elimination during late spermiogenesis
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Biological, clinical and population relevance of 95 loci for blood lipids
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An integrated encyclopedia of DNA elements in the human genome
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A statin-dependent QTL for GATM expression is associated with statin-induced myopathy
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Transcriptome and genome sequencing uncovers functional variation in humans
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Integrative analysis of 111 reference human epigenomes
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Genetics of gene expression in primary immune cells identifies cell type–specific master regulators and roles of HLA alleles
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Mapping cis- and trans-regulatory effects across multiple tissues in twins
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Systematic identification of trans eQTLs as putative drivers of known disease associations
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Tensor decomposition for multiple-tissue gene expression experiments
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Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis
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Identification of an imprinted master trans regulator at the KLF14 locus related to multiple metabolic phenotypes
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Principal components analysis corrects for stratification in genome-wide association studies
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Population genomics of human gene expression
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Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses
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Genotype imputation for genome-wide association studies
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From expression QTLs to personalized transcriptomics
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The role of regulatory variation in complex traits and disease
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IRF-1 expression induces apoptosis and inhibits tumor growth in mouse mammary cancer cells in vitro and in vivo
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Statistical significance for genomewide studies
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uPA deficiency exacerbates muscular dystrophy in MDX mice
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PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
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TopHat: discovering splice junctions with RNA-Seq
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BEDTools: a flexible suite of utilities for comparing genomic features
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Matrix eQTL: ultra fast eQTL analysis via large matrix operations
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RNA-SeQC: RNA-seq metrics for quality control and process optimization
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TreeQTL: hierarchical error control for eQTL findings
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An Improved Bonferroni Procedure for Multiple Tests of Significance
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A single nucleotide polymorphism associated with isolated cleft lip and palate, thyroid cancer and hypothyroidism alters the activity of an oral epithelium and thyroid enhancer near FOXE1
inferredcites →https://doi.org/10.1093/hmg/ddv194openalex-snapshot
Dissecting the genetics of the human transcriptome identifies novel trait-related trans -eQTLs and corroborates the regulatory relevance of non-protein coding loci
inferredcites →https://doi.org/10.1093/nar/gks1172openalex-snapshot
ENCODE Data in the UCSC Genome Browser: year 5 update
inferredcites →https://doi.org/10.1093/nar/gkt1229openalex-snapshot
The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
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Quantifying the degree of sharing of genetic and non-genetic causes of gene expression variability across four tissues
inferredcites →https://doi.org/10.1101/gad.465908openalex-snapshot
Fibrinogen drives dystrophic muscle fibrosis via a TGFβ/alternative macrophage activation pathway
inferredcites →https://doi.org/10.1101/gr.088120.108openalex-snapshot
High resolution mapping of expression QTLs in heterogeneous stock mice in multiple tissues
inferredcites →https://doi.org/10.1101/gr.115337.110openalex-snapshot
Genetic architecture of regulatory variation in Arabidopsis thaliana
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Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1111/rssb.12028openalex-snapshot
Selective Inference on Multiple Families of Hypotheses
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Genetic Dissection of Transcriptional Regulation in Budding Yeast
inferredcites →https://doi.org/10.1126/science.1174148openalex-snapshot
Common Regulatory Variation Impacts Gene Expression in a Cell Type–Dependent Manner
inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
inferredcites →https://doi.org/10.1146/annurev.immunol.15.1.749openalex-snapshot
CELLULAR RESPONSES TO INTERFERON-γ
inferredcites →https://doi.org/10.1146/annurev.immunol.19.1.623openalex-snapshot
IRF Family of Transcription Factors as Regulators of Host Defense
inferredcites →https://doi.org/10.1161/circgenetics.108.825224openalex-snapshot
Association of Novel Genetic Loci With Circulating Fibrinogen Levels
inferredcites →https://doi.org/10.1172/jci40115openalex-snapshot
Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys
inferredcites →https://doi.org/10.1182/blood.v99.8.2835openalex-snapshot
Plasmin activity is required for myogenesis in vitro and skeletal muscle regeneration in vivo
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2164-15-545openalex-snapshot
A comprehensive analysis of piRNAs from adult human testis and their relationship with genes and mobile elements
inferredcites →https://doi.org/10.1186/2044-5040-1-21openalex-snapshot
Aberrant repair and fibrosis development in skeletal muscle
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2013-14-7-r75openalex-snapshot
Gene expression changes with age in skin, adipose tissue, blood and brain
inferredcites →https://doi.org/10.1186/s13059-015-0762-6openalex-snapshot
Tools and best practices for data processing in allelic expression analysis
inferredcites →https://doi.org/10.1186/s13059-016-0895-2openalex-snapshot
Modelling local gene networks increases power to detect trans-acting genetic effects on gene expression
inferredcites →https://doi.org/10.1210/jc.2003-030242openalex-snapshot
The Emergence of the Metabolic Syndrome with Menopause
inferredcites →https://doi.org/10.1210/jc.2006-0503openalex-snapshot
Monosomy for the X-Chromosome Is Associated with an Atherogenic Lipid Profile
inferredcites →https://doi.org/10.1371/journal.pgen.0030161openalex-snapshot
Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis
inferredcites →https://doi.org/10.1371/journal.pgen.1002003openalex-snapshot
The Architecture of Gene Regulatory Variation across Multiple Human Tissues: The MuTHER Study
inferredcites →https://doi.org/10.1371/journal.pgen.1002078openalex-snapshot
Identification, Replication, and Functional Fine-Mapping of Expression Quantitative Trait Loci in Primary Human Liver Tissue
inferredcites →https://doi.org/10.1371/journal.pgen.1003491openalex-snapshot
Effectively Identifying eQTLs from Multiple Tissues by Combining Mixed Model and Meta-analytic Approaches
inferredcites →https://doi.org/10.1371/journal.pgen.1003649openalex-snapshot
Integrative Modeling of eQTLs and Cis-Regulatory Elements Suggests Mechanisms Underlying Cell Type Specificity of eQTLs
inferredcites →https://doi.org/10.1371/journal.pgen.1004383openalex-snapshot
Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics
inferredcites →https://doi.org/10.1371/journal.pgen.1004461openalex-snapshot
Cis and Trans Effects of Human Genomic Variants on Gene Expression
inferredcites →https://doi.org/10.1371/journal.pgen.1004818openalex-snapshot
Mediation Analysis Demonstrates That Trans-eQTLs Are Often Explained by Cis-Mediation: A Genome-Wide Analysis among 1,800 South Asians
inferredcites →https://doi.org/10.1371/journal.pgen.1005035openalex-snapshot
A Meta-analysis of Gene Expression Signatures of Blood Pressure and Hypertension
inferredcites →https://doi.org/10.1371/journal.pone.0010693openalex-snapshot
Genetics and Beyond – The Transcriptome of Human Monocytes and Disease Susceptibility
inferredcites →https://doi.org/10.1371/journal.pone.0034442openalex-snapshot
Novel Associations for Hypothyroidism Include Known Autoimmune Risk Loci
inferredcites →https://doi.org/10.1371/journal.pone.0068141openalex-snapshot
Normalizing RNA-Sequencing Data by Modeling Hidden Covariates with Prior Knowledge
inferredcites →https://doi.org/10.1371/journal.ppat.1000444openalex-snapshot
Activation of Human Monocytes by Live Borrelia burgdorferi Generates TLR2-Dependent and -Independent Responses Which Include Induction of IFN-β
inferredcites →https://doi.org/10.17615/g28n-r219openalex-snapshot
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
inferredcites →https://doi.org/10.3389/fendo.2014.00241openalex-snapshot
Sex-Specific Differences in Lipid and Glucose Metabolism
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.cell.2017.05.038openalex-snapshot
An Expanded View of Complex Traits: From Polygenic to Omnigenic
inferred← citeshttps://doi.org/10.1016/j.coisb.2016.12.019openalex-snapshot
Data resources for human functional genomics
inferred← citeshttps://doi.org/10.1016/j.jspi.2023.06.003openalex-snapshot
Distributed eQTL analysis with auxiliary information
inferred← citeshttps://doi.org/10.1038/s41576-026-00990-yopenalex-snapshot
Machine learning and statistical methods for molecular quantitative trait loci
inferred← citeshttps://doi.org/10.1093/biostatistics/kxx048openalex-snapshot
An empirical Bayes approach for multiple tissue eQTL analysis
inferred← citeshttps://doi.org/10.1101/078741openalex-snapshot
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1005537openalex-snapshot
An independent component analysis confounding factor correction framework for identifying broad impact expression quantitative trait loci
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1008223openalex-snapshot
Causal network inference from gene transcriptional time-series response to glucocorticoids
inferred← citeshttps://doi.org/10.1371/journal.pone.0172681openalex-snapshot
The single nucleotide variant rs12722489 determines differential estrogen receptor binding and enhancer properties of an IL2RA intronic region
inferred← citeshttps://doi.org/10.1371/journal.pone.0193515openalex-snapshot
From SNPs to pathways: Biological interpretation of type 2 diabetes (T2DM) genome wide association study (GWAS) results
inferred← citeshttps://doi.org/10.26481/dis.20190118ecopenalex-snapshot
Genetic variations in connection
inferred← citeshttps://doi.org/10.26508/lsa.202101297openalex-snapshot
Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues
inferred← citeshttps://doi.org/10.3389/fgene.2017.00150openalex-snapshot
Physical Interactions and Expression Quantitative Traits Loci Identify Regulatory Connections for Obesity and Type 2 Diabetes Associated SNPs
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