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shinyheatmap: ultra fast low memory heatmap web interface for big data genomics

https://doi.org/10.1101/076463
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-0-387-84858-7openalex-snapshot
The Elements of Statistical Learning: Data Mining, Inference, and Prediction
inferredcites →https://doi.org/10.1016/j.csda.2008.09.029openalex-snapshot
GAP: A graphical environment for matrix visualization and cluster analysis
inferredcites →https://doi.org/10.1016/s0076-6879(06)11009-5openalex-snapshot
[9] TM4 Microarray Software Suite
inferredcites →https://doi.org/10.1021/ci0496954openalex-snapshot
Molecular Property eXplorer: A Novel Approach to Visualizing SAR Using Tree-Maps and Heatmaps
inferredcites →https://doi.org/10.1038/35076576openalex-snapshot
Computational analysis of microarray data
inferredcites →https://doi.org/10.1038/ncomms14049openalex-snapshot
Massively parallel digital transcriptional profiling of single cells
inferredcites →https://doi.org/10.1038/ng0506-500openalex-snapshot
GenePattern 2.0
inferredcites →https://doi.org/10.1093/bioinformatics/bth349openalex-snapshot
Java Treeview—extensible visualization of microarray data
inferredcites →https://doi.org/10.1093/bioinformatics/bti141openalex-snapshot
PermutMatrix: a graphical environment to arrange gene expression profiles in optimal linear order
inferredcites →https://doi.org/10.1093/bioinformatics/btr490openalex-snapshot
RNA-Seq analysis in MeV
inferredcites →https://doi.org/10.1093/bioinformatics/btu094openalex-snapshot
jHeatmap: an interactive heatmap viewer for the web
inferredcites →https://doi.org/10.1093/nar/gkv468openalex-snapshot
ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap
inferredcites →https://doi.org/10.1093/nar/gkw263openalex-snapshot
iGEMS: an integrated model for identification of alternative exon usage events
inferredcites →https://doi.org/10.1093/nar/gkw419openalex-snapshot
Heatmapper: web-enabled heat mapping for all
inferredcites →https://doi.org/10.1101/034694openalex-snapshot
MicroScope: ChIP-seq and RNA-seq software analysis suite for gene expression heatmaps
inferredcites →https://doi.org/10.1101/gr.141424.112openalex-snapshot
RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development
inferredcites →https://doi.org/10.1109/mcg.2014.1openalex-snapshot
Characterizing Cancer Subtypes Using Dual Analysis in Caleydo StratomeX
inferredcites →https://doi.org/10.1186/1471-2105-7-337openalex-snapshot
HeatMapper: powerful combined visualization of gene expression profile correlations, genotypes, phenotypes and sample characteristics
inferredcites →https://doi.org/10.1186/1756-0381-6-13openalex-snapshot
Unraveling genomic variation from next generation sequencing data
inferredcites →https://doi.org/10.1186/gb-2008-9-7-r118openalex-snapshot
MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
inferredcites →https://doi.org/10.1186/s13029-014-0030-2openalex-snapshot
HeatmapGenerator: high performance RNAseq and microarray visualization software suite to examine differential gene expression levels using an R and C++ hybrid computational pipeline
inferredcites →https://doi.org/10.1186/s13742-015-0077-2openalex-snapshot
Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
inferredcites →https://doi.org/10.12688/f1000research.3-48.v1openalex-snapshot
HeatMapViewer: interactive display of 2D data in biology
inferredcites →https://doi.org/10.12688/f1000research.7035.2openalex-snapshot
RNA-Seq workflow: gene-level exploratory analysis and differential expression
inferredcites →https://doi.org/10.1371/journal.pone.0019541openalex-snapshot
Gitools: Analysis and Visualisation of Genomic Data Using Interactive Heat-Maps
inferredcites →https://doi.org/10.32614/cran.package.heatmaplyopenalex-snapshot
heatmaply: Interactive Cluster Heat Maps Using 'plotly' and 'ggplot2'
inferredcites →https://doi.org/10.32614/cran.package.plotlyopenalex-snapshot
plotly: Create Interactive Web Graphics via 'plotly.js'
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
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