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Real-time tagging of biomedical entities

https://doi.org/10.1101/078469
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.websem.2010.03.003openalex-snapshot
Reflect: A practical approach to web semantics
inferredcites →https://doi.org/10.1016/j.ymeth.2014.11.020openalex-snapshot
DISEASES: Text mining and data integration of disease–gene associations
inferredcites →https://doi.org/10.1016/s1574-1400(08)00012-1openalex-snapshot
PubChem: Integrated Platform of Small Molecules and Biological Activities
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nbt0609-508openalex-snapshot
Reflect: augmented browsing for the life scientist
inferredcites →https://doi.org/10.1093/bioinformatics/btv045openalex-snapshot
ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life
inferredcites →https://doi.org/10.1093/database/bau012openalex-snapshot
COMPARTMENTS: unification and visualization of protein subcellular localization evidence
inferredcites →https://doi.org/10.1093/database/baw005openalex-snapshot
EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation
inferredcites →https://doi.org/10.1093/nar/gkt1207openalex-snapshot
STITCH 4: integration of protein–chemical interactions with user data
inferredcites →https://doi.org/10.1093/nar/gkt1274openalex-snapshot
RefSeq microbial genomes database: new representation and annotation strategy
inferredcites →https://doi.org/10.1093/nar/gku1003openalex-snapshot
STRING v10: protein–protein interaction networks, integrated over the tree of life
inferredcites →https://doi.org/10.1093/nar/gku1010openalex-snapshot
Ensembl 2015
inferredcites →https://doi.org/10.1093/nar/gku1011openalex-snapshot
Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data
inferredcites →https://doi.org/10.1093/nar/gku1068openalex-snapshot
BRENDA in 2015: exciting developments in its 25th year of existence
inferredcites →https://doi.org/10.1093/nar/gku1127openalex-snapshot
Type material in the NCBI Taxonomy Database
inferredcites →https://doi.org/10.1186/1753-6561-9-s5-a3openalex-snapshot
PubAnnotation-query: a search tool for corpora with multi-layers of annotation
inferredcites →https://doi.org/10.1186/2041-1480-4-43openalex-snapshot
The environment ontology: contextualising biological and biomedical entities
inferredcites →https://doi.org/10.1371/journal.pone.0065390openalex-snapshot
The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text
inferredcites →https://doi.org/10.3115/v1/p15-4016openalex-snapshot
Sharing annotations better: RESTful Open Annotation
inferredcites →https://doi.org/10.7717/peerj.1054openalex-snapshot
Comprehensive comparison of large-scale tissue expression datasets

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41467-022-34435-xopenalex-snapshot
Systematic tissue annotations of genomics samples by modeling unstructured metadata
inferred← citeshttps://doi.org/10.1093/nargab/lqab090openalex-snapshot
OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis
inferred← citeshttps://doi.org/10.1101/2021.05.10.443525openalex-snapshot
Systematic tissue annotations of –omics samples by modeling unstructured metadata
inferred← citeshttps://doi.org/10.3390/biology10070665openalex-snapshot
FLAME: A Web Tool for Functional and Literature Enrichment Analysis of Multiple Gene Lists
inferred← citeshttps://doi.org/10.3390/biom12040520openalex-snapshot
Darling: A Web Application for Detecting Disease-Related Biomedical Entity Associations with Literature Mining
inferred← citeshttps://doi.org/10.7554/elife.84919openalex-snapshot
Pancreatic cancer symptom trajectories from Danish registry data and free text in electronic health records
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