On the public citation graph

Ribbon: Visualizing complex genome alignments and structural variation

0 signed · 50 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/nmeth.3174openalex-snapshot

bam.iobio: a web-based, real-time, sequence alignment file inspector

inferredcites →https://doi.org/10.1093/bioinformatics/btr020openalex-snapshot

Dalliance: interactive genome viewing on the web

inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot

Circos: An information aesthetic for comparative genomics

inferredcites →https://doi.org/10.1126/science.1162986openalex-snapshot

Real-Time DNA Sequencing from Single Polymerase Molecules

inferredcites →https://doi.org/10.1126/science.aae0344openalex-snapshot

Long-read sequence assembly of the gorilla genome

inferredcites →https://doi.org/10.1186/gb-2004-5-2-r12openalex-snapshot

Versatile and open software for comparing large genomes

inferredcites →https://doi.org/10.1186/gb-2011-12-1-r6openalex-snapshot

Identification of fusion genes in breast cancer by paired-end RNA-sequencing

inferredcites →https://doi.org/10.1186/gb-2011-12-8-r72openalex-snapshot

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

inferredcites →https://doi.org/10.1186/gb-2013-14-8-r87openalex-snapshot

BreakTrans: uncovering the genomic architecture of gene fusions

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/mgg3.564openalex-snapshot

Evaluation of the detection of GBA missense mutations and other variants using the Oxford Nanopore MinION

inferred← citeshttps://doi.org/10.1016/j.biocel.2020.105882openalex-snapshot

State-of-the-art genome inference in the human MHC

inferred← citeshttps://doi.org/10.1016/j.cell.2022.12.006openalex-snapshot

Novel integrative elements and genomic plasticity in ocean ecosystems

inferred← citeshttps://doi.org/10.1016/j.csbj.2019.11.008openalex-snapshot

Challenges in identifying large germline structural variants for clinical use by long read sequencing

inferred← citeshttps://doi.org/10.1016/j.molcel.2021.11.027openalex-snapshot

Circular DNA in the human germline and its association with recombination

inferred← citeshttps://doi.org/10.1016/j.parkreldis.2019.11.022openalex-snapshot

Nanopore sequencing of the glucocerebrosidase (GBA) gene in a New Zealand Parkinson's disease cohort

inferred← citeshttps://doi.org/10.1038/nbt.4277openalex-snapshot

De novo assembly of haplotype-resolved genomes with trio binning

inferred← citeshttps://doi.org/10.1038/s10038-019-0687-0openalex-snapshot

Visualization tools for human structural variations identified by whole-genome sequencing

inferred← citeshttps://doi.org/10.1038/s41467-020-15848-yopenalex-snapshot

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

inferred← citeshttps://doi.org/10.1038/s41576-018-0003-4openalex-snapshot

Piercing the dark matter: bioinformatics of long-range sequencing and mapping

inferred← citeshttps://doi.org/10.1038/s41587-020-00746-xopenalex-snapshot

Readfish enables targeted nanopore sequencing of gigabase-sized genomes

inferred← citeshttps://doi.org/10.1038/s41597-023-02561-wopenalex-snapshot

A chromosome-level reference genome of the Antarctic blackfin icefish Chaenocephalus aceratus

inferred← citeshttps://doi.org/10.1038/s41598-019-39667-4openalex-snapshot

CRISPR/Cas9 targeted CAPTURE of mammalian genomic regions for characterization by NGS

inferred← citeshttps://doi.org/10.1038/s41598-021-88924-yopenalex-snapshot

Metastasis is altered through multiple processes regulated by the E2F1 transcription factor

inferred← citeshttps://doi.org/10.1038/s42003-020-01377-3openalex-snapshot

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm

inferred← citeshttps://doi.org/10.1093/gigascience/giz030openalex-snapshot

Chromosome-scale assemblies reveal the structural evolution of African cichlid genomes

inferred← citeshttps://doi.org/10.1101/087981openalex-snapshot

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

inferred← citeshttps://doi.org/10.1101/2019.12.17.879148openalex-snapshot

Near-complete Lokiarchaeota genomes from complex environmental samples using long and short read metagenomic analyses

inferred← citeshttps://doi.org/10.1101/2020.01.24.919167openalex-snapshot

Arabidopsis LTR retrotransposons and their regulation by epigenetically activated small RNA

inferred← citeshttps://doi.org/10.1101/720797openalex-snapshot

Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

inferred← citeshttps://doi.org/10.1101/gr.228148.117openalex-snapshot

Nanopore sequencing of complex genomic rearrangements in yeast reveals mechanisms of repeat-mediated double-strand break repair

inferred← citeshttps://doi.org/10.1101/gr.231100.117openalex-snapshot

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line

inferred← citeshttps://doi.org/10.1101/gr.244830.118openalex-snapshot

Recompleting the Caenorhabditis elegans genome

inferred← citeshttps://doi.org/10.1101/gr.259044.119openalex-snapshot

Arabidopsis retrotransposon virus-like particles and their regulation by epigenetically activated small RNA

inferred← citeshttps://doi.org/10.1111/1462-2920.14979openalex-snapshot

Integrative omics analysis of Pseudomonas aeruginosa virus PA5oct highlights the molecular complexity of jumbo phages

inferred← citeshttps://doi.org/10.1111/pbi.13115openalex-snapshot

Genome‐wide selection footprints and deleterious variations in young Asian allotetraploid rapeseed

inferred← citeshttps://doi.org/10.1136/jmedgenet-2018-105976openalex-snapshot

Long-read sequencing and haplotype linkage analysis enabled preimplantation genetic testing for patients carrying pathogenic inversions

inferred← citeshttps://doi.org/10.1158/0008-5472.can-17-0337openalex-snapshot

Variant Review with the Integrative Genomics Viewer

inferred← citeshttps://doi.org/10.1186/s12711-018-0407-9openalex-snapshot

Remapping of the belted phenotype in cattle on BTA3 identifies a multiplication event as the candidate causal mutation

inferred← citeshttps://doi.org/10.1186/s12859-019-3145-2openalex-snapshot

MoMI-G: modular multi-scale integrated genome graph browser

inferred← citeshttps://doi.org/10.1186/s12864-019-6263-3openalex-snapshot

Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization

inferred← citeshttps://doi.org/10.1186/s13073-019-0708-9openalex-snapshot

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

inferred← citeshttps://doi.org/10.1186/s13073-021-00841-xopenalex-snapshot

ClinSV: clinical grade structural and copy number variant detection from whole genome sequencing data

inferred← citeshttps://doi.org/10.1186/s13100-018-0122-7openalex-snapshot

Horizontal transfer and proliferation of Tsu4 in Saccharomyces paradoxus

inferred← citeshttps://doi.org/10.1186/s41065-018-0069-1openalex-snapshot

Long-read sequencing identified a causal structural variant in an exome-negative case and enabled preimplantation genetic diagnosis

inferred← citeshttps://doi.org/10.1371/journal.pone.0326750openalex-snapshot

Analysing genome sequences and associated metadata during the COVID-19 pandemic in Iraq revealed points to be improved: An observational retrospective study

inferred← citeshttps://doi.org/10.1371/journal.ppat.1009418openalex-snapshot

Genomics of an endemic cystic fibrosis Burkholderia multivorans strain reveals low within-patient evolution but high between-patient diversity

inferred← citeshttps://doi.org/10.1534/g3.120.401361openalex-snapshot

Completed Genomic Sequence of Bacillus thuringiensis HER1410 Reveals a Cry -Containing Chromosome, Two Megaplasmids, and an Integrative Plasmidial Prophage

inferred← citeshttps://doi.org/10.31219/osf.io/pyqrxopenalex-snapshot

Chromoscope: interactive multiscale visualization for structural variation in human genomes

inferred← citeshttps://doi.org/10.3389/fgene.2019.01313openalex-snapshot

Location of Balanced Chromosome-Translocation Breakpoints by Long-Read Sequencing on the Oxford Nanopore Platform

inferred← citeshttps://doi.org/10.7554/elife.61076openalex-snapshot

Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.