On the public citation graph

SplitThreader: Exploration and analysis of rearrangements in cancer genomes

https://doi.org/10.1101/087981
0 signed · 36 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi1112s47openalex-snapshot
BEDTools: The Swiss‐Army Tool for Genome Feature Analysis
inferredcites →https://doi.org/10.1002/9780470015902.a0022926openalex-snapshot
Genomic Rearrangements: Mutational Mechanisms
inferredcites →https://doi.org/10.1016/0092-8674(81)90413-xopenalex-snapshot
Expression of a β-globin gene is enhanced by remote SV40 DNA sequences
inferredcites →https://doi.org/10.1016/j.cell.2011.02.013openalex-snapshot
Hallmarks of Cancer: The Next Generation
inferredcites →https://doi.org/10.1016/j.cels.2016.05.007openalex-snapshot
Allele-Specific Quantification of Structural Variations in Cancer Genomes
inferredcites →https://doi.org/10.1016/j.ygyno.2013.06.019openalex-snapshot
Comprehensive genomic profiling of epithelial ovarian cancer by next generation sequencing-based diagnostic assay reveals new routes to targeted therapies
inferredcites →https://doi.org/10.1038/nmeth.3578openalex-snapshot
Interactive analysis and assessment of single-cell copy-number variations
inferredcites →https://doi.org/10.1038/nrc2091openalex-snapshot
The impact of translocations and gene fusions on cancer causation
inferredcites →https://doi.org/10.1038/nrg2593openalex-snapshot
Mechanisms of change in gene copy number
inferredcites →https://doi.org/10.1056/nejm198512053132301openalex-snapshot
Evidence of a New Chimericbcr/c-ablmRNA in Patients with Chronic Myelocytic Leukemia and the Philadelphia Chromosome
inferredcites →https://doi.org/10.1073/pnas.89.19.9267openalex-snapshot
AKT2, a putative oncogene encoding a member of a subfamily of protein-serine/threonine kinases, is amplified in human ovarian carcinomas.
inferredcites →https://doi.org/10.1093/bioinformatics/bts378openalex-snapshot
DELLY: structural variant discovery by integrated paired-end and split-read analysis
inferredcites →https://doi.org/10.1093/nar/gkr362openalex-snapshot
A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines
inferredcites →https://doi.org/10.1093/nar/gku885openalex-snapshot
Aberrant transcriptional regulations in cancers: genome, transcriptome and epigenome analysis of lung adenocarcinoma cell lines
inferredcites →https://doi.org/10.1101/082123openalex-snapshot
Ribbon: Visualizing complex genome alignments and structural variation
inferredcites →https://doi.org/10.1109/tvcg.2011.185openalex-snapshot
D³ Data-Driven Documents
inferredcites →https://doi.org/10.1126/science.3798106openalex-snapshot
Human Breast Cancer: Correlation of Relapse and Survival with Amplification of the HER-2/ neu Oncogene
inferredcites →https://doi.org/10.1186/1755-8417-1-4openalex-snapshot
Mechanisms for human genomic rearrangements
inferredcites →https://doi.org/10.1186/gb-2011-12-1-r6openalex-snapshot
Identification of fusion genes in breast cancer by paired-end RNA-sequencing
inferredcites →https://doi.org/10.1186/gb-2011-12-8-r72openalex-snapshot
TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
inferredcites →https://doi.org/10.1186/gb-2013-14-8-r87openalex-snapshot
BreakTrans: uncovering the genomic architecture of gene fusions
inferredcites →https://doi.org/10.1186/gb-2014-15-6-r84openalex-snapshot
LUMPY: a probabilistic framework for structural variant discovery
inferredcites →https://doi.org/10.1186/gm62openalex-snapshot
Copy number variations and cancer

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ajh.25850openalex-snapshot
Thirty‐three years later: Two distinct cases of acute lymphoblastic leukemia in one patient
inferred← citeshttps://doi.org/10.1002/ajmg.a.62535openalex-snapshot
A patient with compound heterozygosity of SMPD4 : Another example of utility of exome‐based copy number analysis in autosomal recessive disorders
inferred← citeshttps://doi.org/10.1016/j.imu.2023.101306openalex-snapshot
Analysis of breast cancer next-generation sequencing datasets for identifying fusion genes responsible for the cancer progression
inferred← citeshttps://doi.org/10.1038/s10038-019-0687-0openalex-snapshot
Visualization tools for human structural variations identified by whole-genome sequencing
inferred← citeshttps://doi.org/10.1038/s41598-019-39667-4openalex-snapshot
CRISPR/Cas9 targeted CAPTURE of mammalian genomic regions for characterization by NGS
inferred← citeshttps://doi.org/10.1093/nar/gkaf078openalex-snapshot
FuSViz—visualization and interpretation of structural variation using cancer genomics and transcriptomics data
inferred← citeshttps://doi.org/10.1101/gr.231100.117openalex-snapshot
Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line
inferred← citeshttps://doi.org/10.1186/s12859-019-3145-2openalex-snapshot
MoMI-G: modular multi-scale integrated genome graph browser
inferred← citeshttps://doi.org/10.1186/s13073-021-00841-xopenalex-snapshot
ClinSV: clinical grade structural and copy number variant detection from whole genome sequencing data
inferred← citeshttps://doi.org/10.26508/lsa.202302481openalex-snapshot
A multiomic characterization of the leukemia cell line REH using short- and long-read sequencing
inferred← citeshttps://doi.org/10.64898/2026.05.01.722316openalex-snapshot
A complete human pancreatic cancer genome
inferred← citeshttps://doi.org/10.70675/abf007fbz8adcz4c68zb9faz5f550f134b2aopenalex-snapshot
DNA methylation changes CTCF binding and reorganizes 3D genome structure in breast cancer cells
inferred← citeshttps://doi.org/10.7554/elife.58349openalex-snapshot
Expandable and reversible copy number amplification drives rapid adaptation to antifungal drugs
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.