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GARFIELD - GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gepi.20408openalex-snapshot

A new measure of the effective number of tests, a practical tool for comparing families of non‐independent significance tests

inferredcites →https://doi.org/10.1016/j.ajhg.2011.11.029openalex-snapshot

Five Years of GWAS Discovery

inferredcites →https://doi.org/10.1016/j.ajhg.2014.03.004openalex-snapshot

Joint Analysis of Functional Genomic Data and Genome-wide Association Studies of 18 Human Traits

inferredcites →https://doi.org/10.1016/j.ajhg.2015.05.016openalex-snapshot

Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci

inferredcites →https://doi.org/10.1038/nature09270openalex-snapshot

Biological, clinical and population relevance of 95 loci for blood lipids

inferredcites →https://doi.org/10.1038/nature09410openalex-snapshot

Hundreds of variants clustered in genomic loci and biological pathways affect human height

inferredcites →https://doi.org/10.1038/nature10405openalex-snapshot

Genetic variants in novel pathways influence blood pressure and cardiovascular disease risk

inferredcites →https://doi.org/10.1038/nature10659openalex-snapshot

New gene functions in megakaryopoiesis and platelet formation

inferredcites →https://doi.org/10.1038/nature11232openalex-snapshot

The accessible chromatin landscape of the human genome

inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot

An integrated encyclopedia of DNA elements in the human genome

inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot

An integrated map of genetic variation from 1,092 human genomes

inferredcites →https://doi.org/10.1038/nature14248openalex-snapshot

Integrative analysis of 111 reference human epigenomes

inferredcites →https://doi.org/10.1038/nature14962openalex-snapshot

The UK10K project identifies rare variants in health and disease

inferredcites →https://doi.org/10.1038/nbt.1630openalex-snapshot

GREAT improves functional interpretation of cis-regulatory regions

inferredcites →https://doi.org/10.1038/nbt.2153openalex-snapshot

BLUEPRINT to decode the epigenetic signature written in blood

inferredcites →https://doi.org/10.1038/nbt1010-1045openalex-snapshot

The NIH Roadmap Epigenomics Mapping Consortium

inferredcites →https://doi.org/10.1038/ng.2383openalex-snapshot

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

inferredcites →https://doi.org/10.1038/ng.467openalex-snapshot

A genome-wide meta-analysis identifies 22 loci associated with eight hematological parameters in the HaemGen consortium

inferredcites →https://doi.org/10.1038/ng.520openalex-snapshot

New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk

inferredcites →https://doi.org/10.1038/ng.521openalex-snapshot

Genetic variation in GIPR influences the glucose and insulin responses to an oral glucose challenge

inferredcites →https://doi.org/10.1038/ng.685openalex-snapshot

Meta-analysis identifies 13 new loci associated with waist-hip ratio and reveals sexual dimorphism in the genetic basis of fat distribution.

inferredcites →https://doi.org/10.1038/ng.686openalex-snapshot

Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index

inferredcites →https://doi.org/10.1038/ng.717openalex-snapshot

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci

inferredcites →https://doi.org/10.1038/ng.764openalex-snapshot

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47

inferredcites →https://doi.org/10.1073/pnas.0903103106openalex-snapshot

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

inferredcites →https://doi.org/10.1086/519795openalex-snapshot

PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses

inferredcites →https://doi.org/10.1093/bioinformatics/btv201openalex-snapshot

GREGOR: evaluating global enrichment of trait-associated variants in epigenomic features using a systematic, data-driven approach

inferredcites →https://doi.org/10.1101/gr.135350.111openalex-snapshot

GENCODE: The reference human genome annotation for The ENCODE Project

inferredcites →https://doi.org/10.1126/science.1222794openalex-snapshot

Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

inferredcites →https://doi.org/10.12688/f1000research.6032.1openalex-snapshot

FORGE: A tool to discover cell specific enrichments of GWAS associated SNPs in regulatory regions

inferredcites →https://doi.org/10.1371/journal.pgen.1003449openalex-snapshot

All SNPs Are Not Created Equal: Genome-Wide Association Studies Reveal a Consistent Pattern of Enrichment among Functionally Annotated SNPs

inferredcites →https://doi.org/10.1371/journal.pone.0059494openalex-snapshot

Comprehensive Characterization of Human Genome Variation by High Coverage Whole-Genome Sequencing of Forty Four Caucasians

inferredcites →https://doi.org/10.2337/db10-0502openalex-snapshot

Common Variants at 10 Genomic Loci Influence Hemoglobin A1C Levels via Glycemic and Nonglycemic Pathways

inferredcites →https://doi.org/10.2337/db11-0415openalex-snapshot

Genome-Wide Association Identifies Nine Common Variants Associated With Fasting Proinsulin Levels and Provides New Insights Into the Pathophysiology of Type 2 Diabetes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/978-981-16-3993-7_19openalex-snapshot

Status and Prospectives of Genome-Wide Association Studies in Plants

inferred← citeshttps://doi.org/10.1016/j.ajhg.2017.12.003openalex-snapshot

Genome-wide Study of Atrial Fibrillation Identifies Seven Risk Loci and Highlights Biological Pathways and Regulatory Elements Involved in Cardiac Development

inferred← citeshttps://doi.org/10.1016/j.ajhg.2017.12.005openalex-snapshot

Life-Course Genome-wide Association Study Meta-analysis of Total Body BMD and Assessment of Age-Specific Effects

inferred← citeshttps://doi.org/10.1016/j.ajhg.2018.10.001openalex-snapshot

Deciphering the Emerging Complexities of Molecular Mechanisms at GWAS Loci

inferred← citeshttps://doi.org/10.1016/j.ajhg.2018.11.004openalex-snapshot

GWAS Identifies Risk Locus for Erectile Dysfunction and Implicates Hypothalamic Neurobiology and Diabetes in Etiology

inferred← citeshttps://doi.org/10.1016/j.ajhg.2020.04.009openalex-snapshot

Common Genetic Variants Modulate the Electrocardiographic Tpeak-to-Tend Interval

inferred← citeshttps://doi.org/10.1016/j.cell.2016.10.026openalex-snapshot

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

inferred← citeshttps://doi.org/10.1016/j.cell.2016.10.042openalex-snapshot

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

inferred← citeshttps://doi.org/10.1016/j.chom.2018.07.007openalex-snapshot

An Atlas of Genetic Variation Linking Pathogen-Induced Cellular Traits to Human Disease

inferred← citeshttps://doi.org/10.1016/j.isci.2024.109047openalex-snapshot

Sex-dependent placental methylation quantitative trait loci provide insight into the prenatal origins of childhood onset traits and conditions

inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100404openalex-snapshot

Systematic investigation of allelic regulatory activity of schizophrenia-associated common variants

inferred← citeshttps://doi.org/10.1038/s41467-018-06234-wopenalex-snapshot

Genome-wide association study of 23,500 individuals identifies 7 loci associated with brain ventricular volume

inferred← citeshttps://doi.org/10.1038/s41467-019-08912-9openalex-snapshot

Prioritizing Parkinson’s disease genes using population-scale transcriptomic data

inferred← citeshttps://doi.org/10.1038/s41467-019-08923-6openalex-snapshot

Genome wide analysis for mouth ulcers identifies associations at immune regulatory loci

inferred← citeshttps://doi.org/10.1038/s41467-019-12760-yopenalex-snapshot

GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways

inferred← citeshttps://doi.org/10.1038/s41467-024-53594-7openalex-snapshot

Genetic basis of right and left ventricular heart shape

inferred← citeshttps://doi.org/10.1038/s41586-018-0175-2openalex-snapshot

Genomic atlas of the human plasma proteome

inferred← citeshttps://doi.org/10.1038/s41588-018-0157-1openalex-snapshot

Genome-wide association and HLA fine-mapping studies identify risk loci and genetic pathways underlying allergic rhinitis

inferred← citeshttps://doi.org/10.1038/s41588-018-0286-6openalex-snapshot

Discovery of common and rare genetic risk variants for colorectal cancer

inferred← citeshttps://doi.org/10.1101/102392openalex-snapshot

Shared genetic effects on chromatin and gene expression reveal widespread enhancer priming in immune response

inferred← citeshttps://doi.org/10.1101/373555openalex-snapshot

Narcolepsy risk loci are enriched in immune cells and suggest autoimmune modulation of the T cell receptor repertoire

inferred← citeshttps://doi.org/10.1136/annrheumdis-2018-214127openalex-snapshot

Genome-wide meta-analysis reveals shared new loci in systemic seropositive rheumatic diseases

inferred← citeshttps://doi.org/10.1164/rccm.201905-1017ocopenalex-snapshot

Genome-Wide Association Study of Susceptibility to Idiopathic Pulmonary Fibrosis

inferred← citeshttps://doi.org/10.1177/0004867419885443openalex-snapshot

Wnt receptor gene FZD1 was associated with schizophrenia in genome-wide SNP analysis of the Australian Schizophrenia Research Bank cohort

inferred← citeshttps://doi.org/10.1186/s13059-018-1567-1openalex-snapshot

Expression quantitative trait loci in the developing human brain and their enrichment in neuropsychiatric disorders

inferred← citeshttps://doi.org/10.1371/journal.pgen.1009497openalex-snapshot

Genetic variation affects morphological retinal phenotypes extracted from UK Biobank optical coherence tomography images

inferred← citeshttps://doi.org/10.3389/fcell.2020.00194openalex-snapshot

Comprehensive Analysis of the Genetic and Epigenetic Mechanisms of Osteoporosis and Bone Mineral Density

inferred← citeshttps://doi.org/10.3390/genes8060167openalex-snapshot

Effects of Type 1 Diabetes Risk Alleles on Immune Cell Gene Expression

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