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Complete avian malaria parasite genomes reveal features associated with lineage specific evolution in birds and mammals

https://doi.org/10.1101/086504
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Outgoing claims: the papers this work cites, builds on, or argues with.

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DNA Base Excision Repair in Human Malaria Parasites Is Predominantly by a Long-Patch Pathway
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Vector transmission regulates immune control of Plasmodium virulence
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Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution
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Nutrient sensing modulates malaria parasite virulence
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Immune evasion of Plasmodium falciparum by RIFIN via inhibitory receptors
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Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts
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The malaria parasite Plasmodium vivax exhibits greater genetic diversity than Plasmodium falciparum
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Bayesian inference of ancient human demography from individual genome sequences
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RIFINs are adhesins implicated in severe Plasmodium falciparum malaria
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Plasmodium falciparum appears to have arisen as a result of lateral transfer between avian and human hosts.
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Hierarchical Grouping to Optimize an Objective Function
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SURFIN is a polymorphic antigen expressed on Plasmodium falciparum merozoites and infected erythrocytes
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BamView: visualizing and interpretation of next-generation sequencing read alignments
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SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
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Fast and accurate long-read alignment with Burrows–Wheeler transform
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Scaffolding pre-assembled contigs using SSPACE
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Optimized Whole-Genome Amplification Strategy for Extremely AT-Biased Template
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The Genome ofHaemoproteus tartakovskyiand Its Relationship to Human Malaria Parasites
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A Genome-Sequence Survey for Ascogregarina taiwanensis Supports Evolutionary Affiliation but Metabolic Diversity between a Gregarine and Cryptosporidium
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A New Method for Estimating Species Age Supports the Coexistence of Malaria Parasites and Their Mammalian Hosts
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ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
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Plasmodium interspersed repeats: the major multigene superfamily of malaria parasites
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MEME SUITE: tools for motif discovery and searching
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The Gypsy Database (GyDB) of mobile genetic elements: release 2.0
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RATT: Rapid Annotation Transfer Tool
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GeneDB--an annotation database for pathogens
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Pfam: the protein families database
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Rfam 12.0: updates to the RNA families database
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The InterPro protein families database: the classification resource after 15 years
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Genomic analysis of the causative agents of coccidiosis in domestic chickens
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Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization
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Multiple Lineages of Avian Malaria Parasites ( Plasmodium ) in the Galapagos Islands and Evidence for Arrival via Migratory Birds
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inferredcites →https://doi.org/10.1111/tra.12053openalex-snapshot
Role of Plasmepsin V in Export of Diverse Protein Families from the Plasmodium falciparum Exportome
inferredcites →https://doi.org/10.1126/science.1102452openalex-snapshot
Targeting Malaria Virulence and Remodeling Proteins to the Host Erythrocyte
inferredcites →https://doi.org/10.1126/science.1261121openalex-snapshot
Hidden costs of infection: Chronic malaria accelerates telomere degradation and senescence in wild birds
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Efficient Depletion of Host DNA Contamination in Malaria Clinical Sequencing
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CHEMOTHERAPY OF AVIAN MALARIA
inferredcites →https://doi.org/10.1186/1471-2105-9-18openalex-snapshot
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
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Phylogenomic analyses of malaria parasites and evolution of their exported proteins
inferredcites →https://doi.org/10.1186/1471-2148-11-70openalex-snapshot
Mitochondrial genes support a common origin of rodent malaria parasites and Plasmodium falciparum's relatives infecting great apes
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A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers
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piggyBac is an effective tool for functional analysis of the Plasmodium falciparumgenome
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Transcriptome sequencing and analysis of Plasmodium gallinaceum reveals polymorphisms and selection on the apical membrane antigen-1
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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
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De novo assembly and transcriptome analysis of Plasmodium gallinaceum identifies the Rh5 interacting protein (ripr), and reveals a lack of EBL and RH gene family diversification
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Mosquito age and avian malaria infection
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Avian Malaria Parasites and other Haemosporidia
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A Novel ‘Gene Insertion/Marker Out’ (GIMO) Method for Transgene Expression and Gene Complementation in Rodent Malaria Parasites
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High Prevalence and Lineage Diversity of Avian Malaria in Wild Populations of Great Tits (Parus major) and Mosquitoes (Culex pipiens)
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A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA
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New Ultrastructural Analysis of the Invasive Apparatus of the Plasmodium Ookinete
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PATHOGENICITY OF AVIAN MALARIA IN EXPERIMENTALLY-INFECTED HAWAII AMAKIHI

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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AMPK: Sensing Glucose as well as Cellular Energy Status
inferred← citeshttps://doi.org/10.1017/s0031182017002219openalex-snapshot
De novo synthesis of thiamine (vitamin B1) is the ancestral state in Plasmodium parasites – evidence from avian haemosporidians
inferred← citeshttps://doi.org/10.1038/nature21038openalex-snapshot
Plasmodium malariae and P. ovale genomes provide insights into malaria parasite evolution
inferred← citeshttps://doi.org/10.1038/nature23009openalex-snapshot
Nutrient sensing modulates malaria parasite virulence
inferred← citeshttps://doi.org/10.1099/mgen.0.000150openalex-snapshot
Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
inferred← citeshttps://doi.org/10.1128/mmbr.00071-17openalex-snapshot
Transcriptomic Studies of Malaria: a Paradigm for Investigation of Systemic Host-Pathogen Interactions
inferred← citeshttps://doi.org/10.1371/journal.pbio.2006035openalex-snapshot
Plasmodium vivax-like genome sequences shed new insights into Plasmodium vivax biology and evolution
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