On the public citation graph

Machine-learning annotation of human splicing branchpoints

https://doi.org/10.1101/094003
0 signed · 42 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/wrna.1140openalex-snapshot
Exon and intron definition in pre‐mRNA splicing
inferredcites →https://doi.org/10.1016/j.molmed.2012.06.006openalex-snapshot
Pre-mRNA splicing in disease and therapeutics
inferredcites →https://doi.org/10.1016/s0168-9525(03)00140-9openalex-snapshot
Human housekeeping genes are compact
inferredcites →https://doi.org/10.1038/gim.2013.176openalex-snapshot
In silico tools for splicing defect prediction: a survey from the viewpoint of end users
inferredcites →https://doi.org/10.1038/jhg.2016.23openalex-snapshot
IntSplice: prediction of the splicing consequences of intronic single-nucleotide variations in the human genome
inferredcites →https://doi.org/10.1038/ng940openalex-snapshot
Selection for short introns in highly expressed genes
inferredcites →https://doi.org/10.1038/nrg3920openalex-snapshot
Machine learning applications in genetics and genomics
inferredcites →https://doi.org/10.1038/nrm3525openalex-snapshot
Alternative splicing: a pivotal step between eukaryotic transcription and translation
inferredcites →https://doi.org/10.1038/nsmb.2327openalex-snapshot
Large-scale mapping of branchpoints in human pre-mRNA transcripts in vivo
inferredcites →https://doi.org/10.1038/s41588-017-0004-9openalex-snapshot
Annotation-free quantification of RNA splicing using LeafCutter
inferredcites →https://doi.org/10.1073/pnas.89.1.281openalex-snapshot
The molecular defect of ferrochelatase in a patient with erythropoietic protoporphyria.
inferredcites →https://doi.org/10.1089/1066527041410418openalex-snapshot
Maximum Entropy Modeling of Short Sequence Motifs with Applications to RNA Splicing Signals
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/nar/gkn073openalex-snapshot
Human branch point consensus sequence is yUnAy
inferredcites →https://doi.org/10.1093/nar/gkp215openalex-snapshot
Human Splicing Finder: an online bioinformatics tool to predict splicing signals
inferredcites →https://doi.org/10.1093/nar/gku1205openalex-snapshot
OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders
inferredcites →https://doi.org/10.1093/nar/gkv1157openalex-snapshot
Ensembl 2016
inferredcites →https://doi.org/10.1093/nar/gkv1222openalex-snapshot
ClinVar: public archive of interpretations of clinically relevant variants
inferredcites →https://doi.org/10.1093/nar/gkv1275openalex-snapshot
The UCSC Genome Browser database: 2016 update
inferredcites →https://doi.org/10.1101/094003openalex-snapshot
Machine-learning annotation of human splicing branchpoints
inferredcites →https://doi.org/10.1101/gr.097857.109openalex-snapshot
Detection of nonneutral substitution rates on mammalian phylogenies
inferredcites →https://doi.org/10.1101/gr.133744.111openalex-snapshot
Detecting differential usage of exons from RNA-seq data
inferredcites →https://doi.org/10.1101/gr.135350.111openalex-snapshot
GENCODE: The reference human genome annotation for The ENCODE Project
inferredcites →https://doi.org/10.1101/gr.182899.114openalex-snapshot
Genome-wide discovery of human splicing branchpoints
inferredcites →https://doi.org/10.1101/gr.185371.114openalex-snapshot
Widespread exon skipping triggers degradation by nuclear RNA surveillance in fission yeast
inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
inferredcites →https://doi.org/10.1126/science.aaa0355openalex-snapshot
The human transcriptome across tissues and individuals
inferredcites →https://doi.org/10.1126/science.aac7041openalex-snapshot
Identification and characterization of essential genes in the human genome
inferredcites →https://doi.org/10.1126/science.aad9417openalex-snapshot
RNA splicing is a primary link between genetic variation and disease
inferredcites →https://doi.org/10.1146/annurev-biochem-060614-034242openalex-snapshot
Regulation of Alternative Splicing Through Coupling with Transcription and Chromatin Structure
inferredcites →https://doi.org/10.1186/1748-7188-6-26openalex-snapshot
ViennaRNA Package 2.0
inferredcites →https://doi.org/10.1371/journal.pcbi.1001016openalex-snapshot
Genome-Wide Association between Branch Point Properties and Alternative Splicing
inferredcites →https://doi.org/10.1371/journal.pone.0092209openalex-snapshot
Area under Precision-Recall Curves for Weighted and Unweighted Data
inferredcites →https://doi.org/10.47094/978-65-88958-06-3.337-openalex-snapshot
BRUXISMO DENTAL E SUA RELAÇÃO COM OS IMPACTOS PSICOSSOCIAIS DECORRENTES DA PANDEMIA DA COVID-19
inferredcites →https://doi.org/10.5281/zenodo.192173openalex-snapshot
betsig/branchpointer: branchpointer release v0.3

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/bioinformatics/btx727openalex-snapshot
Modeling positional effects of regulatory sequences with spline transformations increases prediction accuracy of deep neural networks
inferred← citeshttps://doi.org/10.1101/183889openalex-snapshot
Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types
inferred← citeshttps://doi.org/10.1101/2023.09.12.23295416openalex-snapshot
Systematic identification of disease-causing promoter and untranslated region variants in 8,040 undiagnosed individuals with rare disease
inferred← citeshttps://doi.org/10.1186/s13073-025-01464-2openalex-snapshot
Systematic identification of disease-causing promoter and untranslated region variants in 8040 undiagnosed individuals with rare disease
inferred← citeshttps://doi.org/10.1261/rna.066290.118openalex-snapshot
A sequence-based, deep learning model accurately predicts RNA splicing branchpoints
inferred← citeshttps://doi.org/10.1371/journal.pone.0178630openalex-snapshot
Alport syndrome cold cases: Missing mutations identified by exome sequencing and functional analysis
showing the first 6 of 7 · page through all 7
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.