On the public citation graph

Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes

0 signed · 61 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.idcr.2016.04.001openalex-snapshot

Nonencapsulated Streptococcus pneumoniae as a cause of chronic adenoiditis

inferredcites →https://doi.org/10.1016/s0378-1097(01)00183-5openalex-snapshot

Sexual isolation in bacteria

inferredcites →https://doi.org/10.1038/ismej.2008.93openalex-snapshot

A comparison of homologous recombination rates in bacteria and archaea

inferredcites →https://doi.org/10.1038/ng.2625openalex-snapshot

Population genomics of post-vaccine changes in pneumococcal epidemiology

inferredcites →https://doi.org/10.1038/ng.2895openalex-snapshot

Dense genomic sampling identifies highways of pneumococcal recombination

inferredcites →https://doi.org/10.1038/nrmicro1871openalex-snapshot

The role of Streptococcus pneumoniae virulence factors in host respiratory colonization and disease

inferredcites →https://doi.org/10.1038/nrmicro2011openalex-snapshot

The rise and fall of bacterial clones: Streptococcus pneumoniae

inferredcites →https://doi.org/10.1073/pnas.1206541109openalex-snapshot

Evolutionary analyses of non-genealogical bonds produced by introgressive descent

inferredcites →https://doi.org/10.1073/pnas.94.12.6571openalex-snapshot

Vaccination against colonizing bacteria with multiple serotypes

inferredcites →https://doi.org/10.1074/jbc.m113.480152openalex-snapshot

Discovery of Streptococcus pneumoniae Serotype 6 Variants with Glycosyltransferases Synthesizing Two Differing Repeating Units

inferredcites →https://doi.org/10.1086/383352openalex-snapshot

The Effect That Mutations in the Conserved Capsular Polysaccharide Biosynthesis GenescpsA, cpsB,andcpsDHave on Virulence ofStreptococcus pneumoniae

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/btp347openalex-snapshot

ABACAS: algorithm-based automatic contiguation of assembled sequences

inferredcites →https://doi.org/10.1093/gbe/evu120openalex-snapshot

Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape

inferredcites →https://doi.org/10.1093/genetics/154.4.1439openalex-snapshot

Estimating Recombinational Parameters in Streptococcus pneumoniae From Multilocus Sequence Typing Data

inferredcites →https://doi.org/10.1093/genetics/164.4.1567openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msn023openalex-snapshot

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

inferredcites →https://doi.org/10.1093/nar/30.7.1575openalex-snapshot

An efficient algorithm for large-scale detection of protein families

inferredcites →https://doi.org/10.1093/nar/gkf436openalex-snapshot

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

inferredcites →https://doi.org/10.1093/nar/gku1196openalex-snapshot

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

inferredcites →https://doi.org/10.1099/mgen.0.000090openalex-snapshot

Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes

inferredcites →https://doi.org/10.1099/mic.0.043901-0openalex-snapshot

Evolution of the capsular gene locus of Streptococcus pneumoniae serogroup 6

inferredcites →https://doi.org/10.1099/mic.0.056580-0openalex-snapshot

Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates

inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

inferredcites →https://doi.org/10.1101/gr.87702openalex-snapshot

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

inferredcites →https://doi.org/10.1111/j.1365-294x.2006.02994.xopenalex-snapshot

Bayesian identification of admixture events using multilocus molecular markers

inferredcites →https://doi.org/10.1126/science.1198545openalex-snapshot

Rapid Pneumococcal Evolution in Response to Clinical Interventions

inferredcites →https://doi.org/10.1126/science.1215947openalex-snapshot

Niche and Neutral Effects of Acquired Immunity Permit Coexistence of Pneumococcal Serotypes

inferredcites →https://doi.org/10.1128/cmr.00024-15openalex-snapshot

Pneumococcal Capsules and Their Types: Past, Present, and Future

inferredcites →https://doi.org/10.1128/iai.00510-07openalex-snapshot

Genetic Basis for the New Pneumococcal Serotype, 6C

inferredcites →https://doi.org/10.1128/iai.00881-09openalex-snapshot

The Streptococcus pneumoniae Capsule Inhibits Complement Activity and Neutrophil Phagocytosis by Multiple Mechanisms

inferredcites →https://doi.org/10.1128/iai.60.1.111-116.1992openalex-snapshot

Strong association between capsular type and virulence for mice among human isolates of Streptococcus pneumoniae

inferredcites →https://doi.org/10.1128/jb.00836-07openalex-snapshot

Genetic Relatedness of theStreptococcus pneumoniaeCapsular Biosynthetic Loci

inferredcites →https://doi.org/10.1128/jb.00837-07openalex-snapshot

Predicted Functions and Linkage Specificities of the Products of theStreptococcus pneumoniaeCapsular Biosynthetic Loci

inferredcites →https://doi.org/10.1128/jb.182.4.1016-1023.2000openalex-snapshot

Barriers to Genetic Exchange between Bacterial Species: Streptococcus pneumoniae Transformation

inferredcites →https://doi.org/10.1128/jb.186.5.1518-1530.2004openalex-snapshot

eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data

inferredcites →https://doi.org/10.1128/jcm.33.10.2759-2762.1995openalex-snapshot

Six newly recognized types of Streptococcus pneumoniae

inferredcites →https://doi.org/10.1128/mbio.00902-15openalex-snapshot

Effect of Serotype on Pneumococcal Competition in a Mouse Colonization Model

inferredcites →https://doi.org/10.1128/mbio.01490-14openalex-snapshot

Parallel Evolution of Streptococcus pneumoniae and Streptococcus mitis to Pathogenic and Mutualistic Lifestyles

inferredcites →https://doi.org/10.1146/annurev.micro.62.081307.162944openalex-snapshot

Capsules of Streptococcus pneumoniae and Other Bacteria: Paradigms for Polysaccharide Biosynthesis and Regulation

inferredcites →https://doi.org/10.1186/1471-2105-13-s14-s8openalex-snapshot

GapFiller: a de novo assembly approach to fill the gap within paired reads

inferredcites →https://doi.org/10.1186/1741-7007-12-49openalex-snapshot

Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal clone

inferredcites →https://doi.org/10.1186/gb-2013-14-5-r47openalex-snapshot

REAPR: a universal tool for genome assembly evaluation

inferredcites →https://doi.org/10.1186/s12866-014-0210-xopenalex-snapshot

A point mutation in cpsE renders Streptococcus pneumoniae nonencapsulated and enhances its growth, adherence and competence

inferredcites →https://doi.org/10.1371/journal.pcbi.1000520openalex-snapshot

Bayesian Phylogeography Finds Its Roots

inferredcites →https://doi.org/10.1371/journal.pcbi.1003537openalex-snapshot

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

inferredcites →https://doi.org/10.1371/journal.pgen.0020031openalex-snapshot

Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes

inferredcites →https://doi.org/10.1371/journal.pgen.1004300openalex-snapshot

Heterogeneity in the Frequency and Characteristics of Homologous Recombination in Pneumococcal Evolution

inferredcites →https://doi.org/10.1371/journal.pgen.1005095openalex-snapshot

Selective and Genetic Constraints on Pneumococcal Serotype Switching

inferredcites →https://doi.org/10.1371/journal.pgen.1005421openalex-snapshot

New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation

inferredcites →https://doi.org/10.1371/journal.pone.0002683openalex-snapshot

Evolution of Streptococcus pneumoniae and Its Close Commensal Relatives

inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

inferredcites →https://doi.org/10.1371/journal.pone.0025018openalex-snapshot

Sequence Diversity within the Capsular Genes of Streptococcus pneumoniae Serogroup 6 and 19

inferredcites →https://doi.org/10.1371/journal.pone.0038271openalex-snapshot

A Longitudinal Study of Streptococcus pneumoniae Carriage in a Cohort of Infants and Their Mothers on the Thailand-Myanmar Border

inferredcites →https://doi.org/10.1371/journal.pone.0097825openalex-snapshot

Population-Based Analysis of Invasive Nontypeable Pneumococci Reveals That Most Have Defective Capsule Synthesis Genes

inferredcites →https://doi.org/10.1371/journal.ppat.1000476openalex-snapshot

Pneumococcal Capsular Polysaccharide Structure Predicts Serotype Prevalence

inferredcites →https://doi.org/10.1534/genetics.105.048975openalex-snapshot

A Simple and Robust Statistical Test for Detecting the Presence of Recombination

inferredcites →https://doi.org/10.1534/genetics.113.157172openalex-snapshot

Inference of the Properties of the Recombination Process from Whole Bacterial Genomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3390/vaccines14010027openalex-snapshot

Genomic Surveillance Reveals Vaccine-Associated Shifts in Pediatric Invasive Streptococcus pneumoniae in Tunisia

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.