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Dense genomic sampling identifies highways of pneumococcal recombination
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Evidence that pneumococcal serotype replacement in Massachusetts following conjugate vaccination is now complete
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Bayesian analysis of population structure based on linked molecular information
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Evidence for several waves of global transmission in the seventh cholera pandemic
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Population genomics of post-vaccine changes in pneumococcal epidemiology
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Multi-targeting by monotherapeutic antibacterials
inferredcites →https://doi.org/10.1073/pnas.112464599openalex-snapshot
Induction of natural competence in Streptococcus pneumoniae triggers lysis and DNA release from a subfraction of the cell population
inferredcites →https://doi.org/10.1086/516303openalex-snapshot
Trends in Antibiotic Resistance Among Diarrheal Pathogens Isolated in Thailand Over 15 Years
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
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Scaffolding pre-assembled contigs using SSPACE
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Bayesian Analysis of Genetic Differentiation Between Populations
inferredcites →https://doi.org/10.1093/molbev/mst028openalex-snapshot
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
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Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
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The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidis
inferredcites →https://doi.org/10.1097/01.inf.0000048676.93549.d1openalex-snapshot
Report from a WHO working group: standard method for detecting upper respiratory carriage of Streptococcus pneumoniae
inferredcites →https://doi.org/10.1097/01.inf.0000049347.42983.77openalex-snapshot
Report from a WHO Working Group: standard method for detecting upper respiratory carriage of Streptococcus pneumoniae
inferredcites →https://doi.org/10.1098/rsif.2011.0601openalex-snapshot
Population structure in theNeisseria, and the biological significance of fuzzy species
inferredcites →https://doi.org/10.1099/mic.0.026328-0openalex-snapshot
Fratricide in Streptococcus pneumoniae: contributions and role of the cell wall hydrolases CbpD, LytA and LytC
inferredcites →https://doi.org/10.1099/mic.0.056580-0openalex-snapshot
Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.092759.109openalex-snapshot
Circos: An information aesthetic for comparative genomics
inferredcites →https://doi.org/10.1111/j.1574-6976.2007.00095.xopenalex-snapshot
Penicillin-binding proteins and β-lactam resistance
inferredcites →https://doi.org/10.1126/science.1171908openalex-snapshot
Hyper-Recombination, Diversity, and Antibiotic Resistance in Pneumococcus
inferredcites →https://doi.org/10.1126/science.1182395openalex-snapshot
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
inferredcites →https://doi.org/10.1126/science.1198545openalex-snapshot
Rapid Pneumococcal Evolution in Response to Clinical Interventions
inferredcites →https://doi.org/10.1128/aac.41.11.2406openalex-snapshot
Mutations in the dihydrofolate reductase gene of trimethoprim-resistant isolates of Streptococcus pneumoniae
inferredcites →https://doi.org/10.1128/aac.43.9.2225openalex-snapshot
Novel Expansions of the Gene Encoding Dihydropteroate Synthase in Trimethoprim-Sulfamethoxazole-Resistant Streptococcus pneumoniae
inferredcites →https://doi.org/10.1128/aac.45.8.2393-2396.2001openalex-snapshot
Alterations in MurM, a Cell Wall Muropeptide Branching Enzyme, Increase High-Level Penicillin and Cephalosporin Resistance in Streptococcus pneumoniae
inferredcites →https://doi.org/10.1128/aem.01343-12openalex-snapshot
Fratricide Is Essential for Efficient Gene Transfer between Pneumococci in Biofilms
inferredcites →https://doi.org/10.1128/jb.01343-08openalex-snapshot
Role of Conjugative Elements in the Evolution of the Multidrug-Resistant Pandemic CloneStreptococcus pneumoniaeSpain23FST81
inferredcites →https://doi.org/10.1128/mbio.00040-11openalex-snapshot
High Levels of Recombination among Streptococcus pneumoniae Isolates from the Gambia
inferredcites →https://doi.org/10.1128/mbio.00151-12openalex-snapshot
Restricted Gene Flow among Hospital Subpopulations of Enterococcus faecium
inferredcites →https://doi.org/10.1128/mbio.00222-11openalex-snapshot
High Levels of Recombination among Streptococcus pneumoniae Isolates from the Gambia
inferredcites →https://doi.org/10.1186/1471-2105-9-539openalex-snapshot
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2012-13-6-r56openalex-snapshot
Toward almost closed genomes with GapFiller
inferredcites →https://doi.org/10.1371/journal.pcbi.1000455openalex-snapshot
Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1371/journal.pone.0030548openalex-snapshot
Pre-Vaccination Nasopharyngeal Pneumococcal Carriage in a Nigerian Population: Epidemiology and Population Biology
inferredcites →https://doi.org/10.1371/journal.pone.0038271openalex-snapshot
A Longitudinal Study of Streptococcus pneumoniae Carriage in a Cohort of Infants and Their Mothers on the Thailand-Myanmar Border
inferredcites →https://doi.org/10.1371/journal.pone.0054026openalex-snapshot
High Rates of Pneumonia in Children under Two Years of Age in a South East Asian Refugee Population
inferredcites →https://doi.org/10.1371/journal.ppat.1001108openalex-snapshot
Generation of Genic Diversity among Streptococcus pneumoniae Strains via Horizontal Gene Transfer during a Chronic Polyclonal Pediatric Infection
inferredcites →https://doi.org/10.3201/eid1211.060414openalex-snapshot
Serotype Competence and Penicillin Resistance in Streptococcus pneumoniae
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Population Structure of Pathogenic Bacteria
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Proton Motive Force Disruptors Block Bacterial Competence and Horizontal Gene Transfer
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Recombination as an enforcement mechanism of prosocial behavior in cooperating bacteria
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Molecular epidemiology of nonencapsulated Streptococcus pneumoniae among Japanese children with acute otitis media
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Investigation on the virulence of non-encapsulated Streptococcus pneumoniae using liquid agar pneumonia model
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Comparative genome analysis reveals a complex population structure of Legionella pneumophila subspecies
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One chromosome, one contig: complete microbial genomes from long-read sequencing and assembly
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High-throughput bacterial functional genomics in the sequencing era
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How clonal are bacteria over time?
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Current methods for capsular typing of Streptococcus pneumoniae
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Whole-genome sequencing to control antimicrobial resistance
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Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
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High-throughput automated microfluidic sample preparation for accurate microbial genomics
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Unencapsulated Streptococcus pneumoniae from conjunctivitis encode variant traits and belong to a distinct phylogenetic cluster
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Microscale insights into pneumococcal antibiotic mutant selection windows
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Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates
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Interbacterial predation as a strategy for DNA acquisition in naturally competent bacteria
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Eavesdropping and crosstalk between secreted quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae
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Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation
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Genome-wide association analyses of invasive pneumococcal isolates identify a missense bacterial mutation associated with meningitis
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Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
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Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation
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Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci
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Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult
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Frequency-dependent selection in vaccine-associated pneumococcal population dynamics
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Within-host dynamics shape antibiotic resistance in commensal bacteria
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A bacterial pan-genome makes gene essentiality strain-dependent and evolvable
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The potential of genomics for infectious disease forecasting
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Genome-wide analysis of Streptococcus pneumoniae serogroup 19 in the decade after the introduction of pneumococcal conjugate vaccines in Australia
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Identification of Streptococcus pneumoniae by a real-time PCR assay targeting SP2020
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Transformation of nonencapsulated Streptococcus pneumoniae during systemic infection
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Frequencies and characteristics of genome-wide recombination in Streptococcus agalactiae, Streptococcus pyogenes, and Streptococcus suis
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Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei
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Population genomics of Staphylococcus pseudintermedius in companion animals in the United States
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Leaky barriers to gene sharing between locally co-existing coagulase-negative Staphylococcus species
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Genetic barriers more than environmental associations explain Serratia marcescens population structure
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Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae
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Climate induces seasonality in pneumococcal transmission
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Antimicrobial Resistance Prediction in PATRIC and RAST
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Allelic Variation of the Capsule Promoter Diversifies Encapsulation and Virulence In Streptococcus pneumoniae
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Evolutionary pathway to increased virulence and epidemic group A Streptococcus disease derived from 3,615 genome sequences
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Sequence type 1 group B Streptococcus , an emerging cause of invasive disease in adults, evolves by small genetic changes
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Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage
inferred← citeshttps://doi.org/10.1073/pnas.1804668115openalex-snapshot
ABC transporter content diversity in Streptococcus pneumoniae impacts competence regulation and bacteriocin production
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Designing cyclic competence-stimulating peptide (CSP) analogs with pan-group quorum-sensing inhibition activity in Streptococcus pneumoniae
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Leaf-induced callus formation in two cultivars: hot pepper ‘CM334’ and bell pepper ‘Dempsey’
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Bacterial genomic epidemiology, from local outbreak characterization to species-history reconstruction
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Non-encapsulatedStreptococcus pneumoniae, vaccination as a measure to interfere with horizontal gene transfer
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Nasopharyngeal pneumococcal carriage rates among HIV-infected adults following widespread pediatric use of conjugate pneumococcal vaccine-13
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DCA for genome-wide epistasis analysis: the statistical genetics perspective
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Inverse Ising techniques to infer underlying mechanisms from data*
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RCandy: an R package for visualizing homologous recombinations in bacterial genomes
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andi: Fast and accurate estimation of evolutionary distances between closely related genomes
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Kpax3: Bayesian bi-clustering of large sequence datasets
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Marine phage genomics: the tip of the iceberg
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Extensive Horizontal Gene Transfer within and between Species of Coagulase-Negative Staphylococcus
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Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci
inferred← citeshttps://doi.org/10.1093/gbe/evu120openalex-snapshot
Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
inferred← citeshttps://doi.org/10.1093/gbe/evu263openalex-snapshot
Global Phylogenomic Analysis of NonencapsulatedStreptococcus pneumoniaeReveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages
inferred← citeshttps://doi.org/10.1093/gbe/evw055openalex-snapshot
Diverse Ecological Strategies Are Encoded byStreptococcus pneumoniaeBacteriocin-Like Peptides
inferred← citeshttps://doi.org/10.1093/gbe/evx188openalex-snapshot
Pherotype Polymorphism in Streptococcus pneumoniae Has No Obvious Effects on Population Structure and Recombination
inferred← citeshttps://doi.org/10.1093/genetics/iyaf115openalex-snapshot
How recombination and clonal evolution shape bacterial lineages and genomes
inferred← citeshttps://doi.org/10.1093/glycob/cww097openalex-snapshot
A chicken vaccine to protect humans from diarrheal disease
inferred← citeshttps://doi.org/10.1093/infdis/jiw628openalex-snapshot
Pneumococcal protein antigen serology varies with age and may predict antigenic profile of colonizing isolates
inferred← citeshttps://doi.org/10.1093/infdis/jiz687openalex-snapshot
Correlates of Nonrandom Patterns of Serotype Switching in Pneumococcus
inferred← citeshttps://doi.org/10.1093/intbio/zyz036openalex-snapshot
Multiplex gene transfer by genetic transformation between isolated S. pneumoniae cells confined in microfluidic droplets
inferred← citeshttps://doi.org/10.1093/jac/dky157openalex-snapshot
Molecular characterization of predominant Streptococcus pneumoniae serotypes causing invasive infections in Canada: the SAVE study, 2011–15
inferred← citeshttps://doi.org/10.1093/jac/dkz477openalex-snapshot
A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa
inferred← citeshttps://doi.org/10.1093/molbev/msv237openalex-snapshot
The Landscape of Realized Homologous Recombination in Pathogenic Bacteria
inferred← citeshttps://doi.org/10.1093/molbev/msx173openalex-snapshot
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination
inferred← citeshttps://doi.org/10.1093/nar/gkad760openalex-snapshot
Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants ofStreptococcus pneumoniae
inferred← citeshttps://doi.org/10.1093/nar/gkaf488openalex-snapshot
Linkage-based ortholog refinement in bacterial pangenomes with CLARC
inferred← citeshttps://doi.org/10.1093/nar/gku1196openalex-snapshot
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
inferred← citeshttps://doi.org/10.1093/nar/gkw359openalex-snapshot
PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning trees
inferred← citeshttps://doi.org/10.1093/nar/gky906openalex-snapshot
Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition
inferred← citeshttps://doi.org/10.1093/nar/gkz361openalex-snapshot
Fast hierarchical Bayesian analysis of population structure
inferred← citeshttps://doi.org/10.1093/nar/gkz656openalex-snapshot
Genome-wide epistasis and co-selection study using mutual information
inferred← citeshttps://doi.org/10.1093/nargab/lqac011openalex-snapshot
Genome-wide association, prediction and heritability in bacteria with application toStreptococcus pneumoniae
inferred← citeshttps://doi.org/10.1093/nargab/lqae061openalex-snapshot
Detecting co-selection through excess linkage disequilibrium in bacterial genomes
inferred← citeshttps://doi.org/10.1093/ofid/ofu037openalex-snapshot
Nonencapsulated Streptococcus pneumoniae Cause Acute Otitis Media in the Chinchilla That Is Enhanced by Pneumococcal Surface Protein K
inferred← citeshttps://doi.org/10.1093/sysbio/syac008openalex-snapshot
Analyzing Phylogenetic Trees with a Tree Lattice Coordinate System and a Graph Polynomial
inferred← citeshttps://doi.org/10.1093/sysbio/syx046openalex-snapshot
A Metric on Phylogenetic Tree Shapes
inferred← citeshttps://doi.org/10.1098/rsob.170074openalex-snapshot
Sequencing of the variable region of rpsB to discriminate between Streptococcus pneumoniae and other streptococcal species
inferred← citeshttps://doi.org/10.1098/rspb.2014.1324openalex-snapshot
Two-phase importance sampling for inference about transmission trees
inferred← citeshttps://doi.org/10.1098/rsta.2016.0359openalex-snapshot
The role of public goods in planetary evolution
inferred← citeshttps://doi.org/10.1098/rstb.2014.0323openalex-snapshot
The ring of life hypothesis for eukaryote origins is supported by multiple kinds of data
inferred← citeshttps://doi.org/10.1098/rstb.2014.0342openalex-snapshot
Carriage burden, multiple colonization and antibiotic pressure promote emergence of resistant vaccine escape pneumococci
inferred← citeshttps://doi.org/10.1098/rstb.2021.0234openalex-snapshot
Selfish, promiscuous and sometimes useful: how mobile genetic elements drive horizontal gene transfer in microbial populations
inferred← citeshttps://doi.org/10.1098/rstb.2021.0237openalex-snapshot
Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation
inferred← citeshttps://doi.org/10.1098/rstb.2021.0246openalex-snapshot
A scalable analytical approach from bacterial genomes to epidemiology
inferred← citeshttps://doi.org/10.1099/mgen.0.000027openalex-snapshot
Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae
inferred← citeshttps://doi.org/10.1099/mgen.0.000038openalex-snapshot
Recombination produces coherent bacterial species clusters in both core and accessory genomes
inferred← citeshttps://doi.org/10.1099/mgen.0.000048openalex-snapshot
Evolutionary dynamics of Enterococcus faecium reveals complex genomic relationships between isolates with independent emergence of vancomycin resistance
inferred← citeshttps://doi.org/10.1099/mgen.0.000056openalex-snapshot
SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments
inferred← citeshttps://doi.org/10.1099/mgen.0.000083openalex-snapshot
Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data
inferred← citeshttps://doi.org/10.1099/mgen.0.000090openalex-snapshot
Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes
inferred← citeshttps://doi.org/10.1099/mgen.0.000119openalex-snapshot
Pre-vaccine serotype composition within a lineage signposts its serotype replacement – a carriage study over 7 years following pneumococcal conjugate vaccine use in the UK
inferred← citeshttps://doi.org/10.1099/mgen.0.000175openalex-snapshot
Use of genomics to design a diagnostic assay to discriminate between Streptococcus pneumoniae and Streptococcus pseudopneumoniae
inferred← citeshttps://doi.org/10.1099/mgen.0.000184openalex-snapshot
SuperDCA for genome-wide epistasis analysis
inferred← citeshttps://doi.org/10.1099/mgen.0.000220openalex-snapshot
PANINI: Pangenome Neighbour Identification for Bacterial Populations
inferred← citeshttps://doi.org/10.1099/mgen.0.000299openalex-snapshot
Genomic differences among carriage and invasive nontypeable pneumococci circulating in South Africa
inferred← citeshttps://doi.org/10.1099/mgen.0.000305openalex-snapshot
Genomic epidemiology of penicillin-non-susceptible Streptococcus pneumoniae
inferred← citeshttps://doi.org/10.1099/mgen.0.000337openalex-snapshot
Benchmarking bacterial genome-wide association study methods using simulated genomes and phenotypes
inferred← citeshttps://doi.org/10.1099/mgen.0.000357openalex-snapshot
Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates
inferred← citeshttps://doi.org/10.1099/mgen.0.000461openalex-snapshot
Host adaptation and microbial competition drive Ralstonia solanacearum phylotype I evolution in the Republic of Korea
inferred← citeshttps://doi.org/10.1099/mgen.0.000622openalex-snapshot
Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis
inferred← citeshttps://doi.org/10.1099/mgen.0.001191openalex-snapshot
Pneumococcal population genomics changes during the early time period of conjugate vaccine uptake in southern India
inferred← citeshttps://doi.org/10.1099/mgen.0.001808openalex-snapshot
Phylogenetic analysis of serotype 19A-sequence type (ST)2331 Streptococcus pneumoniae associated with the Pneumococcal Molecular Epidemiology Network (PMEN)34 clone predominant in Japan after the introduction of the 7-valent pneumococcal conjugate vaccine (PCV7)
inferred← citeshttps://doi.org/10.1099/mic.0.001313openalex-snapshot
A novel proteinaceous molecule produced by Lysinibacillus sp. OF-1 depends on the Ami oligopeptide transporter to kill Streptococcus pneumoniae
inferred← citeshttps://doi.org/10.1099/mic.0.001585openalex-snapshot
Storage stability of non-encapsulated pneumococci in saliva is dependent on null-capsule clade, with strains carrying aliC and aliD showing a competitive disadvantage during culture enrichment
inferred← citeshttps://doi.org/10.1101/038463openalex-snapshot
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes
inferred← citeshttps://doi.org/10.1101/087247openalex-snapshot
Eavesdropping and crosstalk between secreted quorum sensing peptide signals that regulate bacteriocin production in Streptococcus pneumoniae
inferred← citeshttps://doi.org/10.1101/098335openalex-snapshot
Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes
inferred← citeshttps://doi.org/10.1101/133991openalex-snapshot
Heterogeneity among estimates of the core genome and pan-genome in different pneumococcal populations
inferred← citeshttps://doi.org/10.1101/2020.01.03.894154openalex-snapshot
Accurate reconstruction of bacterial pan- and core- genomes with PEPPAN
inferred← citeshttps://doi.org/10.1101/2020.02.10.942367openalex-snapshot
Polynomial Phylogenetic Analysis of Tree Shapes
inferred← citeshttps://doi.org/10.1101/2020.04.28.065870openalex-snapshot
Boundary-Forest Clustering: Large-Scale Consensus Clustering of Biological Sequences
inferred← citeshttps://doi.org/10.1101/2020.12.09.417816openalex-snapshot
Interplay between the cell envelope and mobile genetic elements shapes gene flow in populations of a nosocomial pathogen
inferred← citeshttps://doi.org/10.1101/2021.06.30.450606openalex-snapshot
Classic genome-wide association methods are unlikely to identify causal variants in strongly clonal microbial populations
inferred← citeshttps://doi.org/10.1101/2021.10.04.462983openalex-snapshot
Genome-wide association, prediction and heritability in bacteria
inferred← citeshttps://doi.org/10.1101/2022.02.20.480002openalex-snapshot
Pneumococcal within-host diversity during colonisation, transmission and treatment
inferred← citeshttps://doi.org/10.1101/2022.03.07.483185openalex-snapshot
Diverse regulatory pathways modulate “bet hedging” of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae
inferred← citeshttps://doi.org/10.1101/2022.08.03.502730openalex-snapshot
Competence remodels the pneumococcal cell wall providing resistance to fratricide and surface exposing key virulence factors
inferred← citeshttps://doi.org/10.1101/2023.07.14.548978openalex-snapshot
Genetic barriers more than ecological adaptations shaped Serratia marcescens diversity
inferred← citeshttps://doi.org/10.1101/2023.09.07.556769openalex-snapshot
PAN-GWES: Pangenome-spanning epistasis and co-selection analysis via de Bruijn graphs
inferred← citeshttps://doi.org/10.1101/2023.12.05.570199openalex-snapshot
Molecular and Structural Basis of Oligopeptide Recognition and Transport by the Ami Transporter System in Pneumococci
inferred← citeshttps://doi.org/10.1101/2023.12.27.573471openalex-snapshot
Ultrastructural, metabolic and genetic determinants of the acquisition of macrolide resistance by Streptococcus pneumoniae
inferred← citeshttps://doi.org/10.1101/2024.03.25.586631openalex-snapshot
Seamless, rapid and accurate analyses of outbreak genomic data using Split K-mer Analysis (SKA)
inferred← citeshttps://doi.org/10.1101/2024.08.19.608527openalex-snapshot
Enhanced metagenomics-enabled transmission inference with TRACS
inferred← citeshttps://doi.org/10.1101/2024.09.27.615381openalex-snapshot
Self-immunity towards a novel competence-induced streptococcal murein hydrolase is mediated by a Fem-transferase-like protein
inferred← citeshttps://doi.org/10.1101/2025.05.02.651819openalex-snapshot
Emergent epistasis mediates the role of negative frequency-dependent selection in bacterial strain structure
inferred← citeshttps://doi.org/10.1101/203398openalex-snapshot
Genome sequencing reveals that Streptococcus pneumoniae possesses a large and diverse repertoire of antimicrobial toxins
inferred← citeshttps://doi.org/10.1101/217232openalex-snapshot
Within-host dynamics explain patterns of antibiotic resistance in commensal bacteria
inferred← citeshttps://doi.org/10.1101/468462openalex-snapshot
Comparative genomic analysis of the emerging pathogen Streptococcus pseudopneumoniae : novel insights into virulence determinants and identification of a novel species-specific molecular marker
inferred← citeshttps://doi.org/10.1101/718460openalex-snapshot
A novel mosaic tetracycline resistance gene tet (S/M) detected in a multidrug-resistant pneumococcal CC230 lineage that underwent capsular switching in South Africa
inferred← citeshttps://doi.org/10.1101/811406openalex-snapshot
Correlates of non-random patterns of capsule switching in pneumococcus
inferred← citeshttps://doi.org/10.1101/gr.209536.116openalex-snapshot
Multiple major disease-associated clones ofLegionella pneumophilahave emerged recently and independently
inferred← citeshttps://doi.org/10.1101/gr.260828.120openalex-snapshot
Accurate reconstruction of bacterial pan- and core genomes with PEPPAN
inferred← citeshttps://doi.org/10.1101/gr.278485.123openalex-snapshot
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs
inferred← citeshttps://doi.org/10.1101/gr.279449.124openalex-snapshot
Seamless, rapid, and accurate analyses of outbreak genomic data using splitk-mer analysis
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