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Heterogeneous chromatin mobility derived from chromatin states is a determinant of genome organisation in S. cerevisiae
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Hsp104 is required for tolerance to many forms of stress.
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Systems Biology Approaches for Understanding Genome Architecture
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Model for Protein Concentration Gradients in the Cytoplasm
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Optical rotation and viscosity of native and denatured proteins. X. Further studies on optical rotatory dispersion
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Mechanism of Cohesin Loading onto Chromosomes: A Conformational Dynamics Study
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Multivalent Molecules as Modulators of RNA Granule Size and Composition
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mRNA export: an assembly line from genes to nuclear pores
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Gene positioning and expression
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Cohesin at active genes: a unifying theme for cohesin and gene expression from model organisms to humans
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A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells
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Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells
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SWR-C and INO80 Chromatin Remodelers Recognize Nucleosome-free Regions Near +1 Nucleosomes
inferredcites →https://doi.org/10.1016/j.cell.2014.03.025openalex-snapshot
Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
inferredcites →https://doi.org/10.1016/j.cell.2015.04.004openalex-snapshot
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
inferredcites →https://doi.org/10.1016/j.cell.2015.05.048openalex-snapshot
Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C
inferredcites →https://doi.org/10.1016/j.cell.2016.09.037openalex-snapshot
Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters
inferredcites →https://doi.org/10.1016/j.cell.2017.03.024openalex-snapshot
Chromatin Architecture Emerges during Zygotic Genome Activation Independent of Transcription
inferredcites →https://doi.org/10.1016/j.cell.2017.05.004openalex-snapshot
Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization
inferredcites →https://doi.org/10.1016/j.cellsig.2012.12.018openalex-snapshot
The Not3/5 subunit of the Ccr4-Not complex: A central regulator of gene expression that integrates signals between the cytoplasm and the nucleus in eukaryotic cells
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Global Reorganization of the Nuclear Landscape in Senescent Cells
inferredcites →https://doi.org/10.1016/j.celrep.2016.10.061openalex-snapshot
A Compendium of Chromatin Contact Maps Reveals Spatially Active Regions in the Human Genome
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A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus
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Formation of protein complexes in crowded environments – From in vitro to in vivo
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Chromatin organization: form to function
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Genome-Wide Analyses Reveal RNA Polymerase II Located Upstream of Genes Poised for Rapid Response upon S. cerevisiae Stationary Phase Exit
inferredcites →https://doi.org/10.1016/j.molcel.2009.06.002openalex-snapshot
Structural Basis of Transcription: Mismatch-Specific Fidelity Mechanisms and Paused RNA Polymerase II with Frayed RNA
inferredcites →https://doi.org/10.1016/j.molcel.2011.01.015openalex-snapshot
A Comprehensive Genomic Binding Map of Gene and Chromatin Regulatory Proteins in Saccharomyces
inferredcites →https://doi.org/10.1016/j.molcel.2017.07.022openalex-snapshot
Evolutionarily Conserved Principles Predict 3D Chromatin Organization
inferredcites →https://doi.org/10.1016/j.sbi.2017.02.004openalex-snapshot
Higher order assembly: folding the chromosome
inferredcites →https://doi.org/10.1016/j.stem.2015.11.007openalex-snapshot
3D Chromosome Regulatory Landscape of Human Pluripotent Cells
inferredcites →https://doi.org/10.1016/j.ymeth.2012.05.001openalex-snapshot
Hi–C: A comprehensive technique to capture the conformation of genomes
inferredcites →https://doi.org/10.1016/s0092-8674(00)81641-4openalex-snapshot
Dissecting the Regulatory Circuitry of a Eukaryotic Genome
inferredcites →https://doi.org/10.1016/s0960-9822(02)01338-6openalex-snapshot
Live Imaging of Telomeres
inferredcites →https://doi.org/10.1016/s1097-2765(04)00103-0openalex-snapshot
The RSC Nucleosome-Remodeling Complex Is Required for Cohesin's Association With Chromosome Arms
inferredcites →https://doi.org/10.1038/372475a0openalex-snapshot
Protein disaggregation mediated by heat-shock protein Hspl04
inferredcites →https://doi.org/10.1038/nature04752openalex-snapshot
SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope
inferredcites →https://doi.org/10.1038/nature05632openalex-snapshot
Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome
inferredcites →https://doi.org/10.1038/nature08973openalex-snapshot
A three-dimensional model of the yeast genome
inferredcites →https://doi.org/10.1038/nature09725openalex-snapshot
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster
inferredcites →https://doi.org/10.1038/nature11884openalex-snapshot
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
inferredcites →https://doi.org/10.1038/nature12644openalex-snapshot
A high-resolution map of the three-dimensional chromatin interactome in human cells
inferredcites →https://doi.org/10.1038/nature14222openalex-snapshot
Chromatin architecture reorganization during stem cell differentiation
inferredcites →https://doi.org/10.1038/nature16490openalex-snapshot
Insulator dysfunction and oncogene activation in IDH mutant gliomas
inferredcites →https://doi.org/10.1038/nature16496openalex-snapshot
Super-resolution imaging reveals distinct chromatin folding for different epigenetic states
inferredcites →https://doi.org/10.1038/nature19800openalex-snapshot
Formation of new chromatin domains determines pathogenicity of genomic duplications
inferredcites →https://doi.org/10.1038/nature22822openalex-snapshot
Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin
inferredcites →https://doi.org/10.1038/nature22989openalex-snapshot
Phase separation drives heterochromatin domain formation
inferredcites →https://doi.org/10.1038/nbt.1662openalex-snapshot
Discovery and characterization of chromatin states for systematic annotation of the human genome
inferredcites →https://doi.org/10.1038/ncb2011openalex-snapshot
DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery
inferredcites →https://doi.org/10.1038/ncomms9882openalex-snapshot
Combining Spinach-tagged RNA and gene localization to image gene expression in live yeast
inferredcites →https://doi.org/10.1038/ng.3393openalex-snapshot
Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome
inferredcites →https://doi.org/10.1038/nrg.2016.112openalex-snapshot
Organization and function of the 3D genome
inferredcites →https://doi.org/10.1038/nrg3891openalex-snapshot
The role of regulatory variation in complex traits and disease
inferredcites →https://doi.org/10.1038/srep29775openalex-snapshot
Polymer physics of chromosome large-scale 3D organisation
inferredcites →https://doi.org/10.1073/pnas.0404988101openalex-snapshot
Changes in genomewide occupancy of core transcriptional regulators during heat stress
inferredcites →https://doi.org/10.1073/pnas.0806317105openalex-snapshot
Transcriptional regulation constrains the organization of genes on eukaryotic chromosomes
inferredcites →https://doi.org/10.1073/pnas.0914187107openalex-snapshot
Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres
inferredcites →https://doi.org/10.1073/pnas.94.24.13057openalex-snapshot
Yeast microarrays for genome wide parallel genetic and gene expression analysis
inferredcites →https://doi.org/10.1073/pnas.97.12.6457openalex-snapshot
Identification of the single-strand telomeric DNA binding domain of the Saccharomyces cerevisiae Cdc13 protein
inferredcites →https://doi.org/10.1074/jbc.m003165200openalex-snapshot
Dissociable Rpb4-Rpb7 Subassembly of RNA Polymerase II Binds to Single-strand Nucleic Acid and Mediates a Post-recruitment Step in Transcription Initiation
inferredcites →https://doi.org/10.1080/19491034.2016.1212797openalex-snapshot
Transcription factors dynamically control the spatial organization of the yeast genome
inferredcites →https://doi.org/10.1083/jcb.134.6.1349openalex-snapshot
The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae.
inferredcites →https://doi.org/10.1083/jcb.145.6.1119openalex-snapshot
Differences in the Localization and Morphology of Chromosomes in the Human Nucleus
inferredcites →https://doi.org/10.1083/jcb.201508068openalex-snapshot
Strategies to regulate transcription factor–mediated gene positioning and interchromosomal clustering at the nuclear periphery
inferredcites →https://doi.org/10.1091/mbc.e07-12-1254openalex-snapshot
Deletion of Many Yeast Introns Reveals a Minority of Genes that Require Splicing for Function
inferredcites →https://doi.org/10.1093/bioinformatics/btn250openalex-snapshot
Ontologizer 2.0—a multifunctional tool for GO term enrichment analysis and data exploration
inferredcites →https://doi.org/10.1093/emboj/17.8.2353openalex-snapshot
Structure of wild‐type yeast RNA polymerase II and location of Rpb4 and Rpb7
inferredcites →https://doi.org/10.1093/hmg/10.3.211openalex-snapshot
The spatial organization of human chromosomes within the nuclei of normal and emerin-mutant cells
inferredcites →https://doi.org/10.1093/nar/16.16.7917openalex-snapshot
Mild temperature shock affects transcription of yeast ribosomal protein genes as well as the stability of their mRNAs
inferredcites →https://doi.org/10.1093/nar/gkh163openalex-snapshot
Domainal organization of the lower eukaryotic homologs of the yeast RNA polymerase II core subunit Rpb7 reflects functional conservation
inferredcites →https://doi.org/10.1093/nar/gks1360openalex-snapshot
Spatial localization of co-regulated genes exceeds genomic gene clustering in the Saccharomyces cerevisiae genome
inferredcites →https://doi.org/10.1093/nar/gkt1417openalex-snapshot
Chromosome positioning from activity-based segregation
inferredcites →https://doi.org/10.1093/nar/gku698openalex-snapshot
Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains
inferredcites →https://doi.org/10.1101/118737openalex-snapshot
Preservation of Chromatin Organization after Acute Loss of CTCF in Mouse Embryonic Stem Cells
inferredcites →https://doi.org/10.1101/gad.1307205openalex-snapshot
Developmentally induced changes in transcriptional program alter spatial organization across chromosomes
inferredcites →https://doi.org/10.1101/gr.138032.112openalex-snapshot
Correlated alterations in genome organization, histone methylation, and DNA–lamin A/C interactions in Hutchinson-Gilford progeria syndrome
inferredcites →https://doi.org/10.1101/gr.157008.113openalex-snapshot
High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
inferredcites →https://doi.org/10.1101/gr.185272.114openalex-snapshot
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements
inferredcites →https://doi.org/10.1101/gr.201517.115openalex-snapshot
Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations
inferredcites →https://doi.org/10.1103/physreve.92.032118openalex-snapshot
Nonequilibrium statistical mechanics of mixtures of particles in contact with different thermostats
inferredcites →https://doi.org/10.1103/physrevlett.116.058301openalex-snapshot
Binary Mixtures of Particles with Different Diffusivities Demix
inferredcites →https://doi.org/10.1103/physrevlett.118.098002openalex-snapshot
Small Activity Differences Drive Phase Separation in Active-Passive Polymer Mixtures
inferredcites →https://doi.org/10.1103/physrevlett.58.1038openalex-snapshot
Why the Brazil nuts are on top: Size segregation of particulate matter by shaking
inferredcites →https://doi.org/10.1103/physrevlett.70.3728openalex-snapshot
Vibration-induced size separation in granular media: The convection connection
inferredcites →https://doi.org/10.1119/1.18725openalex-snapshot
Paul Langevin’s 1908 paper “On the Theory of Brownian Motion” [“Sur la théorie du mouvement brownien,” C. R. Acad. Sci. (Paris) 146 , 530–533 (1908)]
inferredcites →https://doi.org/10.1126/science.1065366openalex-snapshot
Chromosome Dynamics in the Yeast Interphase Nucleus
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1236083openalex-snapshot
Organization of the Mitotic Chromosome
inferredcites →https://doi.org/10.1126/science.1242510openalex-snapshot
Extensive Variation in Chromatin States Across Humans
inferredcites →https://doi.org/10.1128/mcb.00870-06openalex-snapshot
Cotranscriptional Recruitment to the mRNA Export Receptor Mex67p Contributes to Nuclear Pore Anchoring of Activated Genes
inferredcites →https://doi.org/10.1128/mcb.13.11.6984openalex-snapshot
A Portion of RNA Polymerase II Molecules Has a Component Essential for Stress Responses and Stress Survival
inferredcites →https://doi.org/10.1146/annurev-biochem-072711-164947openalex-snapshot
Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134233openalex-snapshot
Cohesin: Its Roles and Mechanisms
inferredcites →https://doi.org/10.1186/1471-2121-7-19openalex-snapshot
Motion as a phenotype: the use of live-cell imaging and machine visual screening to characterize transcription-dependent chromosome dynamics
inferredcites →https://doi.org/10.1186/s13059-015-0753-7openalex-snapshot
Comparison of Hi-C results using in-solution versus in-nucleus ligation
inferredcites →https://doi.org/10.1186/s13059-015-0766-2openalex-snapshot
Spatial reorganization of telomeres in long-lived quiescent cells
inferredcites →https://doi.org/10.1186/s13059-015-0866-zopenalex-snapshot
Ancient DNA and the rewriting of human history: be sparing with Occam’s razor
inferredcites →https://doi.org/10.12688/f1000research.7334.1openalex-snapshot
HiCUP: pipeline for mapping and processing Hi-C data
inferredcites →https://doi.org/10.1371/journal.pcbi.1003877openalex-snapshot
Depletion of the Chromatin Looping Proteins CTCF and Cohesin Causes Chromatin Compaction: Insight into Chromatin Folding by Polymer Modelling
inferredcites →https://doi.org/10.1371/journal.pcbi.1004306openalex-snapshot
Differential Chromosome Conformations as Hallmarks of Cellular Identity Revealed by Mathematical Polymer Modeling
inferredcites →https://doi.org/10.15252/embj.201797342openalex-snapshot
Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle
inferredcites →https://doi.org/10.15252/msb.20156492openalex-snapshot
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation
inferredcites →https://doi.org/10.2307/1912557openalex-snapshot
Likelihood Ratio Tests for Model Selection and Non-Nested Hypotheses
inferredcites →https://doi.org/10.3389/fgene.2012.00217openalex-snapshot
Chromatin loops, gene positioning, and gene expression
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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
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Hi-C: A Method to Study the Three-dimensional Architecture of Genomes.
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A polymer model explains the complexity of large-scale chromatin folding
inferredcites →https://doi.org/10.4161/nucl.26394openalex-snapshot
Transcriptional regulation at the yeast nuclear envelope
inferredcites →https://doi.org/10.7554/elife.05565openalex-snapshot
A simple biophysical model emulates budding yeast chromosome condensation
inferredcites →https://doi.org/10.7554/elife.27451openalex-snapshot
Transcription factor clusters regulate genes in eukaryotic cells
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1007/978-3-319-92967-5_1openalex-snapshot
Systems Biology of Genome Structure and Dynamics
inferred← citeshttps://doi.org/10.1016/j.sbi.2017.02.004openalex-snapshot
Higher order assembly: folding the chromosome
inferred← citeshttps://doi.org/10.1038/s41556-024-01382-2openalex-snapshot
Disordered C-terminal domain drives spatiotemporal confinement of RNAPII to enhance search for chromatin targets
inferred← citeshttps://doi.org/10.1073/pnas.2221726120openalex-snapshot
Polymer folding through active processes recreates features of genome organization
inferred← citeshttps://doi.org/10.1101/405969openalex-snapshot
Hi-D: Nanoscale mapping of nuclear dynamics in single living cells
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Hi-D: nanoscale mapping of nuclear dynamics in single living cells
inferred← citeshttps://doi.org/10.1186/s13059-020-02185-yopenalex-snapshot
Navigating the crowd: visualizing coordination between genome dynamics, structure, and transcription
inferred← citeshttps://doi.org/10.3390/e20070520openalex-snapshot
Interfacial Properties of Active-Passive Polymer Mixtures
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