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Hi-D: Nanoscale mapping of nuclear dynamics in single living cells

https://doi.org/10.1101/405969
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471142727.mb2806s111openalex-snapshot
Assaying Cell Cycle Status Using Flow Cytometry
inferredcites →https://doi.org/10.1007/978-1-4939-7371-2_3openalex-snapshot
Flow Cytometric Detection of G0 in Live Cells by Hoechst 33342 and Pyronin Y Staining
inferredcites →https://doi.org/10.1007/s10577-016-9548-2openalex-snapshot
Perspectives: using polymer modeling to understand the formation and function of nuclear compartments
inferredcites →https://doi.org/10.1016/j.bpj.2012.06.029openalex-snapshot
Bayesian Approach to MSD-Based Analysis of Particle Motion in Live Cells
inferredcites →https://doi.org/10.1016/j.bpj.2013.11.1311openalex-snapshot
Fast Spatiotemporal Correlation Spectroscopy to Determine Protein Lateral Diffusion Laws in Live Cell Membranes
inferredcites →https://doi.org/10.1016/j.bpj.2016.02.032openalex-snapshot
On the Quantification of Cellular Velocity Fields
inferredcites →https://doi.org/10.1016/j.bpj.2017.08.014openalex-snapshot
Real-Time Imaging of a Single Gene Reveals Transcription-Initiated Local Confinement
inferredcites →https://doi.org/10.1016/j.bpj.2018.03.011openalex-snapshot
Formation of Chromatin Subcompartments by Phase Separation
inferredcites →https://doi.org/10.1016/j.ceb.2018.03.009openalex-snapshot
Genome organization at different scales: nature, formation and function
inferredcites →https://doi.org/10.1016/j.cell.2013.01.009openalex-snapshot
LBR and Lamin A/C Sequentially Tether Peripheral Heterochromatin and Inversely Regulate Differentiation
inferredcites →https://doi.org/10.1016/j.cell.2013.02.028openalex-snapshot
Single-Cell Dynamics of Genome-Nuclear Lamina Interactions
inferredcites →https://doi.org/10.1016/j.cell.2013.07.018openalex-snapshot
Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel
inferredcites →https://doi.org/10.1016/j.cell.2013.12.001openalex-snapshot
Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System
inferredcites →https://doi.org/10.1016/j.cell.2014.03.025openalex-snapshot
Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription
inferredcites →https://doi.org/10.1016/j.cell.2014.11.021openalex-snapshot
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
inferredcites →https://doi.org/10.1016/j.cell.2015.08.040openalex-snapshot
Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
inferredcites →https://doi.org/10.1016/j.cell.2017.04.022openalex-snapshot
Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression
inferredcites →https://doi.org/10.1016/j.celrep.2017.01.018openalex-snapshot
Visualization of Chromatin Decompaction and Break Site Extrusion as Predicted by Statistical Polymer Modeling of Single-Locus Trajectories
inferredcites →https://doi.org/10.1016/j.compgeo.2010.09.002openalex-snapshot
Application of a Coupled Eulerian–Lagrangian approach on geomechanical problems involving large deformations
inferredcites →https://doi.org/10.1016/j.cub.2006.03.059openalex-snapshot
Long-Range Directional Movement of an Interphase Chromosome Site
inferredcites →https://doi.org/10.1016/j.febslet.2015.05.037openalex-snapshot
The 4D nucleome: Evidence for a dynamic nuclear landscape based on co‐aligned active and inactive nuclear compartments
inferredcites →https://doi.org/10.1016/j.jocs.2014.12.002openalex-snapshot
LCS Tool: A computational platform for Lagrangian coherent structures
inferredcites →https://doi.org/10.1016/j.molcel.2017.06.018openalex-snapshot
Dynamic Organization of Chromatin Domains Revealed by Super-Resolution Live-Cell Imaging
inferredcites →https://doi.org/10.1016/j.molcel.2018.11.020openalex-snapshot
Condensin-Dependent Chromatin Compaction Represses Transcription Globally during Quiescence
inferredcites →https://doi.org/10.1016/s0006-3495(02)75277-6openalex-snapshot
Translational Diffusion of Individual Class II MHC Membrane Proteinsin Cells
inferredcites →https://doi.org/10.1016/s0006-3495(99)77119-5openalex-snapshot
Quantitative Motion Analysis of Subchromosomal Foci in Living Cells Using Four-Dimensional Microscopy
inferredcites →https://doi.org/10.1016/s0960-9822(02)00695-4openalex-snapshot
Chromatin Motion Is Constrained by Association with Nuclear Compartments in Human Cells
inferredcites →https://doi.org/10.1021/ac2034369openalex-snapshot
Bayesian Approach to the Analysis of Fluorescence Correlation Spectroscopy Data I: Theory
inferredcites →https://doi.org/10.1021/acssynbio.8b00139openalex-snapshot
Macromolecular Crowding Induces Spatial Correlations That Control Gene Expression Bursting Patterns
inferredcites →https://doi.org/10.1038/087345a0openalex-snapshot
An Introduction to the Theory of Statistics
inferredcites →https://doi.org/10.1038/nature05916openalex-snapshot
Nuclear organization of the genome and the potential for gene regulation
inferredcites →https://doi.org/10.1038/nature11082openalex-snapshot
Topological domains in mammalian genomes identified by analysis of chromatin interactions
inferredcites →https://doi.org/10.1038/nature21411openalex-snapshot
Complex multi-enhancer contacts captured by genome architecture mapping
inferredcites →https://doi.org/10.1038/nature22989openalex-snapshot
Phase separation drives heterochromatin domain formation
inferredcites →https://doi.org/10.1038/ncomms9497openalex-snapshot
SiR–Hoechst is a far-red DNA stain for live-cell nanoscopy
inferredcites →https://doi.org/10.1038/nmeth.1176openalex-snapshot
High-density mapping of single-molecule trajectories with photoactivated localization microscopy
inferredcites →https://doi.org/10.1038/nmeth.1233openalex-snapshot
Dynamic multiple-target tracing to probe spatiotemporal cartography of cell membranes
inferredcites →https://doi.org/10.1038/nmeth.1237openalex-snapshot
Robust single-particle tracking in live-cell time-lapse sequences
inferredcites →https://doi.org/10.1038/nmeth.2808openalex-snapshot
Objective comparison of particle tracking methods
inferredcites →https://doi.org/10.1038/nrm3952openalex-snapshot
Structural basis of transcription initiation by RNA polymerase II
inferredcites →https://doi.org/10.1038/nsmb1280openalex-snapshot
In vivo dynamics of RNA polymerase II transcription
inferredcites →https://doi.org/10.1039/c6sm00775aopenalex-snapshot
Active diffusion of model chromosomal loci driven by athermal noise
inferredcites →https://doi.org/10.1039/c6sm02722aopenalex-snapshot
Dynamics of active Rouse chains
inferredcites →https://doi.org/10.1073/pnas.1220313110openalex-snapshot
Micron-scale coherence in interphase chromatin dynamics
inferredcites →https://doi.org/10.1073/pnas.1717920115openalex-snapshot
Live-cell analysis of endogenous GFP-RPB1 uncovers rapid turnover of initiating and promoter-paused RNA Polymerase II
inferredcites →https://doi.org/10.1073/pnas.1806297115openalex-snapshot
Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes
inferredcites →https://doi.org/10.1080/01621459.1993.10476408openalex-snapshot
Alternatives to the Median Absolute Deviation
inferredcites →https://doi.org/10.1083/jcb.201811090openalex-snapshot
Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II
inferredcites →https://doi.org/10.1093/nar/gky269openalex-snapshot
Formation of correlated chromatin domains at nanoscale dynamic resolution during transcription
inferredcites →https://doi.org/10.1101/106344openalex-snapshot
Heterogeneous chromatin mobility derived from chromatin states is a determinant of genome organisation in S. cerevisiae
inferredcites →https://doi.org/10.1101/244038openalex-snapshot
Heterochromatin drives organization of conventional and inverted nuclei
inferredcites →https://doi.org/10.1101/559369openalex-snapshot
Single particle trajectory statistic to reconstruct chromatin organization and dynamics
inferredcites →https://doi.org/10.1101/gad.216200.113openalex-snapshot
In vivo live imaging of RNA polymerase II transcription factories in primary cells
inferredcites →https://doi.org/10.1101/gr.157008.113openalex-snapshot
High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
inferredcites →https://doi.org/10.1101/gr.245456.118openalex-snapshot
Pervasive and dynamic transcription initiation in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1109/iccv.1998.710815openalex-snapshot
Bilateral filtering for gray and color images
inferredcites →https://doi.org/10.1111/j.0022-2720.2004.01393.xopenalex-snapshot
Phase‐retrieved pupil functions in wide‐field fluorescence microscopy
inferredcites →https://doi.org/10.1126/science.1138341openalex-snapshot
RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1239053openalex-snapshot
Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells
inferredcites →https://doi.org/10.1126/science.aar7831openalex-snapshot
Real-time imaging of DNA loop extrusion by condensin
inferredcites →https://doi.org/10.1146/annurev.biophys.26.1.373openalex-snapshot
SINGLE-PARTICLE TRACKING:Applications to Membrane Dynamics
inferredcites →https://doi.org/10.1186/s12860-016-0111-yopenalex-snapshot
High resolution imaging reveals heterogeneity in chromatin states between cells that is not inherited through cell division
inferredcites →https://doi.org/10.1186/s13072-016-0093-1openalex-snapshot
Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells
inferredcites →https://doi.org/10.1371/journal.pcbi.1005136openalex-snapshot
Dynamic Nucleosome Movement Provides Structural Information of Topological Chromatin Domains in Living Human Cells
inferredcites →https://doi.org/10.1371/journal.pcbi.1005469openalex-snapshot
Transient chromatin properties revealed by polymer models and stochastic simulations constructed from Chromosomal Capture data
inferredcites →https://doi.org/10.1371/journal.pcbi.1006159openalex-snapshot
How epigenome drives chromatin folding and dynamics, insights from efficient coarse-grained models of chromosomes
inferredcites →https://doi.org/10.1371/journal.pone.0068336openalex-snapshot
New Approaches for Calculating Moran’s Index of Spatial Autocorrelation
inferredcites →https://doi.org/10.1529/biophysj.104.051078openalex-snapshot
Anomalous Diffusion of Proteins Due to Molecular Crowding
inferredcites →https://doi.org/10.1529/biophysj.105.066670openalex-snapshot
Chromatin Dynamics in Interphase Cells Revealed by Tracking in a Two-Photon Excitation Microscope
inferredcites →https://doi.org/10.1529/biophysj.105.079525openalex-snapshot
Chromatin Structure Exhibits Spatio-Temporal Heterogeneity within the Cell Nucleus
inferredcites →https://doi.org/10.1529/biophysj.106.102244openalex-snapshot
Single-Particle Tracking of Membrane Protein Diffusion in a Potential: Simulation, Detection, and Application to Confined Diffusion of CFTR Cl− Channels
inferredcites →https://doi.org/10.2307/2291267openalex-snapshot
Alternatives to the Median Absolute Deviation
inferredcites →https://doi.org/10.4161/trns.2.3.16172openalex-snapshot
Inhibiting eukaryotic transcription. Which compound to choose? How to evaluate its activity?
inferredcites →https://doi.org/10.48550/arxiv.1711.00137openalex-snapshot
Pomegranate: fast and flexible probabilistic modeling in python
inferredcites →https://doi.org/10.5281/zenodo.3634347openalex-snapshot
romanbarth/Hi-D: Hi-D: Nanoscale mapping of nuclear dynamics in single living cells
inferredcites →https://doi.org/10.6084/m9.figshare.11793801openalex-snapshot
HiD_GenomeBiology2020_RawData
inferredcites →https://doi.org/10.7554/elife.13617openalex-snapshot
RNA Polymerase II cluster dynamics predict mRNA output in living cells
inferredcites →https://doi.org/10.7554/elife.25776openalex-snapshot
CTCF and cohesin regulate chromatin loop stability with distinct dynamics
inferredcites →https://doi.org/10.7554/elife.25776.038openalex-snapshot
Author response: CTCF and cohesin regulate chromatin loop stability with distinct dynamics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11427-024-2916-5openalex-snapshot
Cellular optical imaging techniques: a dynamic advancing frontier
inferred← citeshttps://doi.org/10.1007/s12551-020-00675-8openalex-snapshot
Heterogeneous fluid-like movements of chromatin and their implications to transcription
inferred← citeshttps://doi.org/10.1016/j.ceb.2020.02.016openalex-snapshot
Fluid-like chromatin: Toward understanding the real chromatin organization present in the cell
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.108614openalex-snapshot
Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation
inferred← citeshttps://doi.org/10.1016/j.jmb.2019.10.018openalex-snapshot
Local Chromatin Motion and Transcription
inferred← citeshttps://doi.org/10.1016/j.tcb.2019.11.003openalex-snapshot
Mobility and Repair of Damaged DNA: Random or Directed?
inferred← citeshttps://doi.org/10.1016/j.tig.2019.06.007openalex-snapshot
Advances Using Single-Particle Trajectories to Reconstruct Chromatin Organization and Dynamics
inferred← citeshttps://doi.org/10.1038/s41594-023-01059-8openalex-snapshot
Transcription modulates chromatin dynamics and locus configuration sampling
inferred← citeshttps://doi.org/10.1073/pnas.1907342116openalex-snapshot
Organization of fast and slow chromatin revealed by single-nucleosome dynamics
inferred← citeshttps://doi.org/10.1073/pnas.2311374121openalex-snapshot
Individual transcription factors modulate both the micromovement of chromatin and its long-range structure
inferred← citeshttps://doi.org/10.1080/19491034.2020.1763093openalex-snapshot
Dynamics as a cause for the nanoscale organization of the genome
inferred← citeshttps://doi.org/10.1126/sciadv.aaz2196openalex-snapshot
Coupling chromatin structure and dynamics by live super-resolution imaging
inferred← citeshttps://doi.org/10.1186/s13072-021-00424-5openalex-snapshot
The solid and liquid states of chromatin
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