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Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species

https://doi.org/10.1101/106914
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0410s25openalex-snapshot
Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
inferredcites →https://doi.org/10.1002/bies.201300072openalex-snapshot
Jumping the fine LINE between species: Horizontal transfer of transposable elements in animals catalyses genome evolution
inferredcites →https://doi.org/10.1007/978-1-59745-251-9_6openalex-snapshot
Estimating Maximum Likelihood Phylogenies with PhyML
inferredcites →https://doi.org/10.1007/s00239-004-2625-8openalex-snapshot
Teleost Fish Genomes Contain a Diverse Array of L1 RetrotransposonLineages That Exhibit a Low Copy Number and High Rate of Turnover
inferredcites →https://doi.org/10.1007/s00439-005-1321-0openalex-snapshot
A systematic analysis of LINE-1 endonuclease-dependent retrotranspositional events causing human genetic disease
inferredcites →https://doi.org/10.1016/j.devcel.2016.02.024openalex-snapshot
Transposable Elements and Their KRAB-ZFP Controllers Regulate Gene Expression in Adult Tissues
inferredcites →https://doi.org/10.1016/j.gene.2013.01.008openalex-snapshot
Retroelements in human disease
inferredcites →https://doi.org/10.1016/j.mib.2016.03.002openalex-snapshot
Endogenized viral sequences in mammals
inferredcites →https://doi.org/10.1016/j.tree.2010.06.001openalex-snapshot
Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0378-1119(99)00260-7openalex-snapshot
Molecular evolution of Bov-B LINEs in vertebrates
inferredcites →https://doi.org/10.1016/s0959-437x(98)80092-0openalex-snapshot
Mobile elements and disease
inferredcites →https://doi.org/10.1023/a:1004082906518openalex-snapshot
Horizontal transfer of non-LTR retrotransposons in vertebrates
inferredcites →https://doi.org/10.1023/a:1012704812424openalex-snapshot
Comparative studies of the endonucleases from two related Xenopus laevis retrotransposons, Tx1L and Tx2L: target site specificity and evolutionary implications
inferredcites →https://doi.org/10.1038/35038572openalex-snapshot
Mobile elements and the human genome
inferredcites →https://doi.org/10.1038/nature10530openalex-snapshot
A high-resolution map of human evolutionary constraint using 29 mammals
inferredcites →https://doi.org/10.1038/nature21683openalex-snapshot
KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks
inferredcites →https://doi.org/10.1038/nature22975openalex-snapshot
Host and viral traits predict zoonotic spillover from mammals
inferredcites →https://doi.org/10.1038/ncomms11396openalex-snapshot
Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes
inferredcites →https://doi.org/10.1038/ng.917openalex-snapshot
Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals
inferredcites →https://doi.org/10.1038/nrg.2016.139openalex-snapshot
Regulatory activities of transposable elements: from conflicts to benefits
inferredcites →https://doi.org/10.1038/nrg2337openalex-snapshot
Transposable elements and the evolution of regulatory networks
inferredcites →https://doi.org/10.1038/nrg3962openalex-snapshot
Horizontal gene transfer: building the web of life
inferredcites →https://doi.org/10.1073/pnas.0709398105openalex-snapshot
Possible involvement of SINEs in mammalian-specific brain formation
inferredcites →https://doi.org/10.1073/pnas.0901282106openalex-snapshot
Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome
inferredcites →https://doi.org/10.1073/pnas.1205856110openalex-snapshot
Widespread horizontal transfer of retrotransposons
inferredcites →https://doi.org/10.1073/pnas.1616702114openalex-snapshot
Dynamics of genome size evolution in birds and mammals
inferredcites →https://doi.org/10.1073/pnas.1621178114openalex-snapshot
Massive horizontal transfer of transposable elements in insects
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr315openalex-snapshot
TimeTree2: species divergence times on the iPhone
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/gbe/evw243openalex-snapshot
LINEs between Species: Evolutionary Dynamics of LINE-1 Retrotransposons across the Eukaryotic Tree of Life
inferredcites →https://doi.org/10.1093/molbev/mss181openalex-snapshot
Vertical Evolution and Horizontal Transfer of CR1 Non-LTR Retrotransposons and Tc1/mariner DNA Transposons in Lepidoptera Species
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkr367openalex-snapshot
HMMER web server: interactive sequence similarity searching
inferredcites →https://doi.org/10.1093/nar/gkw290openalex-snapshot
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
inferredcites →https://doi.org/10.1098/rspb.2013.2450openalex-snapshot
Horizontal gene transfer in the acquisition of novel traits by metazoans
inferredcites →https://doi.org/10.1101/gr.164400.113openalex-snapshot
Widespread and frequent horizontal transfers of transposable elements in plants
inferredcites →https://doi.org/10.1126/science.15739260openalex-snapshot
The Significance of Responses of the Genome to Challenge
inferredcites →https://doi.org/10.1126/science.289.5482.1152openalex-snapshot
L1 Retrotransposons Shape the Mammalian Genome
inferredcites →https://doi.org/10.1126/science.aad5497openalex-snapshot
Regulatory evolution of innate immunity through co-option of endogenous retroviruses
inferredcites →https://doi.org/10.1126/science.aaf2977openalex-snapshot
A copy-and-paste gene regulatory network
inferredcites →https://doi.org/10.1128/cmr.00017-06openalex-snapshot
Bats: Important Reservoir Hosts of Emerging Viruses
inferredcites →https://doi.org/10.1159/000084979openalex-snapshot
Repbase Update, a database of eukaryotic repetitive elements
inferredcites →https://doi.org/10.11646/zootaxa.1668.1.4openalex-snapshot
The Tree of Life Web Project*
inferredcites →https://doi.org/10.1186/1471-2105-12-116openalex-snapshot
Ultra-fast sequence clustering from similarity networks with SiLiX
inferredcites →https://doi.org/10.1186/1471-2105-7-439openalex-snapshot
TreeDyn: towards dynamic graphics and annotations for analyses of trees
inferredcites →https://doi.org/10.1186/1471-2105-7-474openalex-snapshot
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
inferredcites →https://doi.org/10.1186/s13100-014-0033-1openalex-snapshot
Repeated horizontal transfers of four DNA transposons in invertebrates and bats
inferredcites →https://doi.org/10.1371/journal.pbio.2001536openalex-snapshot
Ecological networks to unravel the routes to horizontal transposon transfers
inferredcites →https://doi.org/10.1371/journal.pone.0000158openalex-snapshot
Evolutionary History of LINE-1 in the Major Clades of Placental Mammals
inferredcites →https://doi.org/10.1371/journal.pone.0009490openalex-snapshot
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
inferredcites →https://doi.org/10.1534/genetics.107.080275openalex-snapshot
Loss of LINE-1 Activity in the Megabats
inferredcites →https://doi.org/10.3390/genes3030409openalex-snapshot
Transposable Elements: From DNA Parasites to Architects of Metazoan Evolution
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s10592-019-01165-5openalex-snapshot
Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks
inferred← citeshttps://doi.org/10.1016/j.beproc.2017.12.024openalex-snapshot
The non-Darwinian evolution of behavers and behaviors
inferred← citeshttps://doi.org/10.1016/j.cell.2018.05.043openalex-snapshot
A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity
inferred← citeshttps://doi.org/10.1016/j.gde.2018.02.007openalex-snapshot
Horizontal acquisition of transposable elements and viral sequences: patterns and consequences
inferred← citeshttps://doi.org/10.1111/eva.12939openalex-snapshot
Evaluating the probability of CRISPR‐based gene drive contaminating another species
inferred← citeshttps://doi.org/10.3410/f.733482986.793549108openalex-snapshot
Faculty Opinions recommendation of A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity.
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