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TimeTree2: species divergence times on the iPhone

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/nrg1659openalex-snapshot
Molecular clocks: four decades of evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btl505openalex-snapshot
TimeTree: a public knowledge-base of divergence times among organisms
inferredcites →https://doi.org/10.1093/molbev/msq014openalex-snapshot
Performance of Relaxed-Clock Methods in Estimating Evolutionary Divergence Times and Their Credibility Intervals
inferredcites →https://doi.org/10.1093/oso/9780199535033.001.0001openalex-snapshot
The Timetree of Life
inferredcites →https://doi.org/10.1093/oso/9780199535033.003.0001openalex-snapshot
Discovering the Timetree of Life
inferredcites →https://doi.org/10.1093/oso/9780199535033.003.0002openalex-snapshot
Timetrees: Beyond Cladograms, Phenograms, And Phylograms
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1525/abt.2011.73.2.9openalex-snapshot
Helping Students Conceptualize Species Divergence Events Using the Online Tool “TimeTree: The Timescale of Life”

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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An inventory of online reptile images
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Multi‐method analysis for the three‐dimensional reconstruction of muscle fascicles from DiceCT datasets
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Comparative data on the differentiation and growth of bone ornamentation in gnathostomes (Chordata: Vertebrata)
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Flipper bone distribution reveals flexible trailing edge in underwater flying marine tetrapods
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Exploring binding and allosteric energy landscapes for the KRAS interactions with effector proteins using Markov state modeling of conformational ensembles and allosteric network modeling
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A Practical Approach to Reconstruct Evolutionary History of Animal Sialyltransferases and Gain Insights into the Sequence–Function Relationships of Golgi-Glycosyltransferases
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Inflammasome Activation Can Mediate Tissue-Specific Pathogenesis or Protection in Staphylococcus aureus Infection
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Evolution of intrinsic disorder in eukaryotic proteins
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INSL4 Pseudogenes Help Define the Relaxin Family Repertoire in the Common Ancestor of Placental Mammals
inferred← citeshttps://doi.org/10.1007/s00239-023-10106-3openalex-snapshot
PAReTT: A Python Package for the Automated Retrieval and Management of Divergence Time Data from the TimeTree Resource for Downstream Analyses
inferred← citeshttps://doi.org/10.1007/s11258-022-01223-yopenalex-snapshot
Endemism in recently diverged angiosperms is associated with polyploidy
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The new chimeric chiron genes evolved essential roles in zebrafish embryonic development by regulating NAD+ levels
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Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation
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In Silico Phylogenetic and Motif Analysis of ACE2 Gene Across Eukaryotes
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Widespread horizontal transfer of retrotransposons
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Estimating divergence times in large molecular phylogenies
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Drastic neofunctionalization associated with evolution of the timezyme AANAT 500 Mya
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A respiratory chain controlled signal transduction cascade in the mitochondrial intermembrane space mediates hydrogen peroxide signaling
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Contraction of the type I IFN locus and unusual constitutive expression of IFN-α in bats
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The Hematopoietic Expression Viewer: expanding mobile apps as a scientific tool
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Performance of computational tools in evaluating the functional impact of laboratory-induced amino acid mutations
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Exploring spatial patterns of gene expression from Fruit Fly embryogenesis on the iPhone
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JustOrthologs: a fast, accurate and user-friendly ortholog identification algorithm
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Evolutionary medicine of emunctory functions of the kidney: an empirical review
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The Expansion and Functional Diversification of the Mammalian Ribonuclease A Superfamily Epitomizes the Efficiency of Multigene Families at Generating Biological Novelty
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The Evolutionary Fate of Alternatively Spliced Homologous Exons after Gene Duplication
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Pairs of Adjacent Conserved Noncoding Elements Separated by Conserved Genomic Distances Act as Cis-Regulatory Units
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Evolution of Hominin Polyunsaturated Fatty Acid Metabolism: From Africa to the New World
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A chromosome-level, haplotype-resolved genome assembly and annotation for the Eurasian minnow (Leuciscidae: Phoxinus phoxinus ) provide evidence of haplotype diversity
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Citrullination Was Introduced into Animals by Horizontal Gene Transfer from Cyanobacteria
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TimeTree 5: An Expanded Resource for Species Divergence Times
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The Diversity of Class II Transposable Elements in Mammalian Genomes Has Arisen from Ancestral Phylogenetic Splits during Ancient Waves of Proliferation through the Genome
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Human MicroRNAs Originated from Two Periods at Accelerated Rates in Mammalian Evolution
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
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Tissue- and Stage-Dependent Dosage Compensation on the Neo-X Chromosome in Drosophila pseudoobscura
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Integrative View of α2,3-Sialyltransferases (ST3Gal) Molecular and Functional Evolution in Deuterostomes: Significance of Lineage-Specific Losses
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Relaxing the Molecular Clock to Different Degrees for Different Substitution Types
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A Molecular Evolutionary Reference for the Human Variome
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Comparative Genomics Identifies Epidermal Proteins Associated with the Evolution of the Turtle Shell
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lolal Is an Evolutionarily New Epigenetic Regulator of dpp Transcription during Dorsal–Ventral Axis Formation
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TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
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Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing
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Exact Distribution of Divergence Times from Fossil Ages and Tree Topologies
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Neocortex expansion is linked to size variations in gene families with chemotaxis, cell–cell signalling and immune response functions in mammals
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Nocturnality in synapsids predates the origin of mammals by over 100 million years
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Grouping substitution types into different relaxed molecular clocks
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The evolution of quantitative sensitivity
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Evolutionary history of the brown rat: out of southern East Asia and selection
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Re-evaluating inheritance in genome evolution: widespread transfer of LINEs between species
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Identification of developmentally important genes in Silene latifolia through chemical genetics and transcriptome profiling
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Sturgeons: An Evolutionary Insight to The α-globin Protein Speciation and Diversification
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Positive selection of neuregulin 1 (NRG-1) among three long-lived vertebrates
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Accurate Characterization of the Allosteric Energy Landscapes, Binding Hotspots and Long-Range Communications for KRAS Complexes with Effector Proteins : Integrative Approach Using Microsecond Molecular Dynamics, Deep Mutational Scanning of Binding Energetics and Allosteric Network Modeling
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Atomistic Profiling of KRAS Interactions with Monobodies and Affimer Proteins Through Ensemble-Based Mutational Scanning Unveils Conserved Residue Networks Linking Cryptic Pockets and Regulating Mechanisms of Binding, Specificity and Allostery
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A Conserved Architecture of Allosteric Communications and Regulatory Hotspots in the KRAS Complexes with Diverse Binding Proteins Controls Mechanisms of Effector Mimicry and Allosteric Modulation : Atomistic Revelations from Molecular Simulations and Mutational Scanning of Binding Energetics and…
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Human genomic disease variants: A neutral evolutionary explanation
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Chromosome‐scale assembly and whole‐genome sequencing of 266 giant panda roundworms provide insights into their evolution, adaptation and potential drug targets
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A testis‐specific gene within a widely expressed gene: Contrasting evolutionary patterns of two differentially expressed mammalian proteins encoded by a single gene, CAMK 4
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Microanatomical diversity of amniote ribs: an exploratory quantitative study
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Estimating the distribution of carotenoid coloration in skin and integumentary structures of birds and extinct dinosaurs
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Green Targeting Predictor and Ambiguous Targeting Predictor 2: the pitfalls of plant protein targeting prediction and of transient protein expression in heterologous systems
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EXCEPTIONAL PRESERVATION AND THE FOSSIL RECORD OF TETRAPOD INTEGUMENT
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Positive Selection and the Evolution ofizumoGenes in Mammals
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Inhibition of Rat Muscle and Liver Phosphofructokinases by High Doses of Ethanol
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ANRIL/CDKN2B-AS shows two-stage clade-specific evolution and becomes conserved after transposon insertions in simians
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Large-scale transcriptome sequencing and gene analyses in the crab-eating macaque (Macaca fascicularis) for biomedical research
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Expansion of ruminant-specific microRNAs shapes target gene expression divergence between ruminant and non-ruminant species
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Genomic landscape and evolutionary dynamics of mariner transposable elements within the Drosophila genus
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Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria)
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Evolutionary analysis of selective constraints identifies ameloblastin (AMBN) as a potential candidate for amelogenesis imperfecta
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Ruminant-specific multiple duplication events of PRDM9 before speciation
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Trends in genome dynamics among major orders of insects revealed through variations in protein families
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Molecular evolution and diversification of the Argonaute family of proteins in plants
inferred← citeshttps://doi.org/10.1186/s13059-018-1456-7openalex-snapshot
Horizontal transfer of BovB and L1 retrotransposons in eukaryotes
inferred← citeshttps://doi.org/10.1242/jeb.200451openalex-snapshot
Joint angular excursions during cyclical behaviors differ between tetrapod feeding and locomotor systems
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Variation in limb loading magnitude and timing in tetrapods
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The evolution of asymmetrical gaits in gnathostome vertebrates
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The Influence of Ethanol on Pyruvate Kinases Activity in Vivo, in Vitro, in Silico
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Dynactin Subunit p150Glued Is a Neuron-Specific Anti-Catastrophe Factor
inferred← citeshttps://doi.org/10.1371/journal.pgen.1004531openalex-snapshot
Positive Selection and Multiple Losses of the LINE-1-Derived L1TD1 Gene in Mammals Suggest a Dual Role in Genome Defense and Pluripotency
inferred← citeshttps://doi.org/10.1371/journal.pgen.1005536openalex-snapshot
Fungal Infection Induces Sex-Specific Transcriptional Changes and Alters Sexual Dimorphism in the Dioecious Plant Silene latifolia
inferred← citeshttps://doi.org/10.1371/journal.pone.0062415openalex-snapshot
A Multi-Platform Draft de novo Genome Assembly and Comparative Analysis for the Scarlet Macaw (Ara macao)
inferred← citeshttps://doi.org/10.1371/journal.pone.0073560openalex-snapshot
Evolutionary History of Chordate PAX Genes: Dynamics of Change in a Complex Gene Family
inferred← citeshttps://doi.org/10.1371/journal.pone.0082362openalex-snapshot
Comparison of Ultra-Conserved Elements in Drosophilids and Vertebrates
inferred← citeshttps://doi.org/10.1371/journal.pone.0090240openalex-snapshot
A Draft De Novo Genome Assembly for the Northern Bobwhite (Colinus virginianus) Reveals Evidence for a Rapid Decline in Effective Population Size Beginning in the Late Pleistocene
inferred← citeshttps://doi.org/10.1371/journal.pone.0191268openalex-snapshot
Yearly fluctuations of flower landscape in a Mediterranean scrubland: Consequences for floral resource availability
inferred← citeshttps://doi.org/10.1371/journal.ppat.1002790openalex-snapshot
An Endogenous Foamy-like Viral Element in the Coelacanth Genome
inferred← citeshttps://doi.org/10.14348/molcells.2015.0121openalex-snapshot
Gain of a New Exon by a Lineage-Specific Alu Element-Integration Event in the BCS1L Gene during Primate Evolution
inferred← citeshttps://doi.org/10.1515/mammalia-2015-0070openalex-snapshot
Phylogeny explains better than ecology or body size the variation of the first lower molar in didelphid marsupials
inferred← citeshttps://doi.org/10.1530/ey.16.14.5openalex-snapshot
Horizontal transfer of BovB and L1 retrotransposons in eukaryotes
inferred← citeshttps://doi.org/10.1534/g3.115.020180openalex-snapshot
Long-Lasting Gene Conversion Shapes the Convergent Evolution of the Critical Methanogenesis Genes
inferred← citeshttps://doi.org/10.1534/g3.117.040170openalex-snapshot
A Chromosome-Scale Assembly of theBactrocera cucurbitaeGenome Provides Insight to the Genetic Basis ofwhite pupae
inferred← citeshttps://doi.org/10.18258/2619openalex-snapshot
Azolla, a little fern with massive green potential
inferred← citeshttps://doi.org/10.20517/and.2022.14openalex-snapshot
Modeling neurodegenerative diseases using non-human primates: advances and challenges
inferred← citeshttps://doi.org/10.21203/rs.3.rs-550165/v1openalex-snapshot
Endemism in Recently Diverged Angiosperms Is Associated With Chromosome Set Duplication
inferred← citeshttps://doi.org/10.22215/etd/2018-12707openalex-snapshot
Accelerated Transfer Learning for Protein-Protein Interaction Prediction
inferred← citeshttps://doi.org/10.24272/j.issn.2095-8137.2023.197openalex-snapshot
Genetically modified non-human primate models for research on neurodegenerative diseases
inferred← citeshttps://doi.org/10.26879/750openalex-snapshot
Quantifying the living fossil concept
inferred← citeshttps://doi.org/10.31237/osf.io/gzf52openalex-snapshot
Metacommunity phylogenteic structure along environmental gradients
inferred← citeshttps://doi.org/10.3389/fevo.2021.751238openalex-snapshot
High Blood Flow Into the Femur Indicates Elevated Aerobic Capacity in Synapsids Since the Synapsida-Sauropsida Split
inferred← citeshttps://doi.org/10.3389/fmicb.2021.653684openalex-snapshot
Origins and Evolution of the Primate Hepatitis B Virus
inferred← citeshttps://doi.org/10.3390/toxins9100312openalex-snapshot
Target-Specificity in Scorpions; Comparing Lethality of Scorpion Venoms across Arthropods and Vertebrates
inferred← citeshttps://doi.org/10.3410/f.733554650.793569618openalex-snapshot
Faculty Opinions recommendation of Fern genomes elucidate land plant evolution and cyanobacterial symbioses.
inferred← citeshttps://doi.org/10.4137/ebo.s30594openalex-snapshot
Using Disease-Associated Coding Sequence Variation to Investigate Functional Compensation by Human Paralogous Proteins
inferred← citeshttps://doi.org/10.4202/app.00727.2020openalex-snapshot
The fossil record of camelids demonstrates a late divergence between Bactrian camel and dromedary
inferred← citeshttps://doi.org/10.70675/4f8ee6d6z81dfz41a1z8edfzc8593ea05803openalex-snapshot
La famille de transporteurs de monosaccharides ERD6-like (Early Response to Dehydration six-like) : émergence, évolution chez les plantes terrestres et réponses au déficit hydrique dans les feuilles d'Arabidopsis thaliana
inferred← citeshttps://doi.org/10.7155/jgaa.00447openalex-snapshot
Computing phylogenetic trees using topologically related minimum spanning trees
inferred← citeshttps://doi.org/10.7287/peerj.78v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Alu elements in primates are preferentially lost from areas of high GC content (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.78v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Alu elements in primates are preferentially lost from areas of high GC content (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.78openalex-snapshot
Alu elements in primates are preferentially lost from areas of high GC content
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.