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Verification of Arabidopsis stock collections using SNPmatch - an algorithm for genotyping high-plexed samples

https://doi.org/10.1101/109520
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2016.05.063openalex-snapshot
1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/ng.1042openalex-snapshot
Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1101/gr.177881.114openalex-snapshot
Tn5 transposase and tagmentation procedures for massively scaled sequencing projects
inferredcites →https://doi.org/10.1105/tpc.15.00502openalex-snapshot
A Proposal Regarding Best Practices for Validating the Identity of Genetic Stocks and the Effects of Genetic Variants
inferredcites →https://doi.org/10.1126/science.1259110openalex-snapshot
Fixing problems with cell lines
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0128036openalex-snapshot
Inexpensive Multiplexed Library Preparation for Megabase-Sized Genomes
inferredcites →https://doi.org/10.1534/g3.114.016501openalex-snapshot
Rapid and Inexpensive Whole-Genome Genotyping-by-Sequencing for Crossover Localization and Fine-Scale Genetic Mapping
inferredcites →https://doi.org/10.2144/000112598openalex-snapshot
The Costs of using Unauthenticated, Over-Passaged Cell Lines: How Much more Data do we Need?

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1038/s41559-018-0754-5openalex-snapshot
Phenotypic and genome-wide association with the local environment of Arabidopsis
inferred← citeshttps://doi.org/10.1101/310045openalex-snapshot
Adaptive protein evolution through length variation in short tandem repeats
inferred← citeshttps://doi.org/10.31857/s0015330324050051openalex-snapshot
Генетическая инженерия как методологическая основа функциональной геномики растений
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