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Adaptive protein evolution through length variation in short tandem repeats
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Transgenerational Epigenetic Inheritance: Myths and Mechanisms
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Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions
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Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity
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Perineuronal nets stabilize the grid cell network
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Molecular recognition features (MoRFs) in three domains of life
inferredcites →https://doi.org/10.1046/j.0960-7412.2001.01214.xopenalex-snapshot
Entopically additive expression of GLABRA2 alters the frequency and spacing of trichome initiation
inferredcites →https://doi.org/10.1046/j.1365-294x.2001.01281.xopenalex-snapshot
Microsatellite diversity associated with ecological factors in Hordeum spontaneum populations in Israel
inferredcites →https://doi.org/10.1073/pnas.0408118101openalex-snapshot
Molecular origins of rapid and continuous morphological evolution
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Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3
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SAC phosphoinositide phosphatases at the tonoplast mediate vacuolar function in Arabidopsis
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Rac Homologues and Compartmentalized Phosphatidylinositol 4, 5-Bisphosphate Act in a Common Pathway to Regulate Polar Pollen Tube Growth
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The Sequence Alignment/Map format and SAMtools
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BEDTools: a flexible suite of utilities for comparing genomic features
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The variant call format and VCFtools
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Pybedtools: a flexible Python library for manipulating genomic datasets and annotations
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Matrix eQTL: ultra fast eQTL analysis via large matrix operations
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MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins
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Allelic polymorphisms in a glycosyltransferase gene shape glycan repertoire in theO-linked protein glycosylation system ofNeisseria
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inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gkm363openalex-snapshot
PrDOS: prediction of disordered protein regions from amino acid sequence
inferredcites →https://doi.org/10.1093/nar/gkr1090openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gkw986openalex-snapshot
AraPheno: a public database for Arabidopsis thaliana phenotypes
inferredcites →https://doi.org/10.1093/nar/gky1131openalex-snapshot
STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets
inferredcites →https://doi.org/10.1093/nar/gky384openalex-snapshot
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding
inferredcites →https://doi.org/10.1093/nar/gkz841openalex-snapshot
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases
inferredcites →https://doi.org/10.1093/pcp/pcw200openalex-snapshot
ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery
inferredcites →https://doi.org/10.1093/plcell/koab107openalex-snapshot
Length variation in short tandem repeats affects gene expression in natural populations of Arabidopsis thaliana
inferredcites →https://doi.org/10.1101/109520openalex-snapshot
Verification of Arabidopsis stock collections using SNPmatch - an algorithm for genotyping high-plexed samples
inferredcites →https://doi.org/10.1101/gad.463608openalex-snapshot
Control of final seed and organ size by the DA1 gene family in Arabidopsis thaliana
inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
inferredcites →https://doi.org/10.1101/gr.135780.111openalex-snapshot
lobSTR: A short tandem repeat profiler for personal genomes
inferredcites →https://doi.org/10.1101/gr.231753.117openalex-snapshot
Massive variation of short tandem repeats with functional consequences across strains of Arabidopsis thaliana
inferredcites →https://doi.org/10.1104/pp.106.081489openalex-snapshot
Differential Expression and Localization of Early Light-Induced Proteins in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.109.135806openalex-snapshot
MIKC* MADS Domain Heterodimers Are Required for Pollen Maturation and Tube Growth in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.109.139170openalex-snapshot
Auxin-Responsive Genes AIR12 Code for a New Family of Plasma Membrane b-Type Cytochromes Specific to Flowering Plants
inferredcites →https://doi.org/10.1104/pp.109.149930openalex-snapshot
Stem Cell Signaling in Arabidopsis Requires CRN to Localize CLV2 to the Plasma Membrane
inferredcites →https://doi.org/10.1104/pp.111.176883openalex-snapshot
Inositol Polyphosphate 5-Phosphatase7 Regulates the Production of Reactive Oxygen Species and Salt Tolerance in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.113.229716openalex-snapshot
Characterization and Identification of cis-Regulatory Elements in Arabidopsis Based on Single-Nucleotide Polymorphism Information
inferredcites →https://doi.org/10.1104/pp.117.2.375openalex-snapshot
Gibberellins Promote Trichome Formation by Up-Regulating GLABROUS1 in Arabidopsis1
inferredcites →https://doi.org/10.1104/pp.15.00962openalex-snapshot
Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.20.00486openalex-snapshot
Photoexcited Cryptochrome2 Interacts Directly with TOE1 and TOE2 in Flowering Regulation
inferredcites →https://doi.org/10.1105/tpc.010926openalex-snapshot
Cloning and Characterization of the WAX2 Gene of Arabidopsis Involved in Cuticle Membrane and Wax Production
inferredcites →https://doi.org/10.1105/tpc.108.060848openalex-snapshot
SCREAM/ICE1 and SCREAM2 Specify Three Cell-State Transitional Steps Leading to Arabidopsis Stomatal Differentiation
inferredcites →https://doi.org/10.1105/tpc.113.120071openalex-snapshot
Tools and Strategies to Match Peptide-Ligand Receptor Pairs
inferredcites →https://doi.org/10.1105/tpc.18.00290openalex-snapshot
ORANGE Represses Chloroplast Biogenesis in Etiolated Arabidopsis Cotyledons via Interaction with TCP14
inferredcites →https://doi.org/10.1111/1574-6976.12036openalex-snapshot
The role of variable DNA tandem repeats in bacterial adaptation
inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02868.xopenalex-snapshot
Members of the Arabidopsis AtTPK/KCO family form homomeric vacuolar channels in planta
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03595.xopenalex-snapshot
Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana
inferredcites →https://doi.org/10.1111/mec.15440openalex-snapshot
Transcribed microsatellite allele lengths are often correlated with gene expression in natural sunflower populations
inferredcites →https://doi.org/10.1111/tpj.15019openalex-snapshot
Activation tagging identifies Arabidopsis transcription factor AtMYB68 for heat and drought tolerance at yield determining reproductive stages
inferredcites →https://doi.org/10.1126/science.278.5346.2117openalex-snapshot
Natural Variation in a Drosophila Clock Gene and Temperature Compensation
inferredcites →https://doi.org/10.1146/annurev-biochem-072711-164947openalex-snapshot
Intrinsically Disordered Proteins and Intrinsically Disordered Protein Regions
inferredcites →https://doi.org/10.1146/annurev-genet-072610-155046openalex-snapshot
Variable Tandem Repeats Accelerate Evolution of Coding and Regulatory Sequences
inferredcites →https://doi.org/10.1186/1471-2105-4-2openalex-snapshot
An automated method for finding molecular complexes in large protein interaction networks
inferredcites →https://doi.org/10.1186/1471-2105-7-208openalex-snapshot
Length-dependent prediction of protein intrinsic disorder
inferredcites →https://doi.org/10.1186/1471-2229-14-54openalex-snapshot
Involvement of co-repressor LUH and the adapter proteins SLK1 and SLK2 in the regulation of abiotic stress response genes in Arabidopsis
inferredcites →https://doi.org/10.1186/1471-2229-9-20openalex-snapshot
The extracellular EXO protein mediates cell expansion in Arabidopsis leaves
inferredcites →https://doi.org/10.1186/gb-2009-10-6-r59openalex-snapshot
Tandem and cryptic amino acid repeats accumulate in disordered regions of proteins
inferredcites →https://doi.org/10.1186/s12864-016-3448-xopenalex-snapshot
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
inferredcites →https://doi.org/10.1186/s12864-018-4616-yopenalex-snapshot
Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats
inferredcites →https://doi.org/10.1186/s12864-019-5516-5openalex-snapshot
Patterns of microsatellite distribution across eukaryotic genomes
inferredcites →https://doi.org/10.12688/f1000research.4572.1openalex-snapshot
GeneMANIA: Fast gene network construction and function prediction for Cytoscape
inferredcites →https://doi.org/10.1271/bbb.130405openalex-snapshot
Development of Gateway Binary Vectors R4L1pGWB Possessing the Bialaphos Resistance Gene (bar) and the Tunicamycin Resistance Gene as Markers for Promoter Analysis in Plants
inferredcites →https://doi.org/10.1271/bbb.90720openalex-snapshot
Development of Gateway Binary Vectors, R4L1pGWBs, for Promoter Analysis in Higher Plants
inferredcites →https://doi.org/10.1371/journal.pcbi.1000376openalex-snapshot
Prediction of Protein Binding Regions in Disordered Proteins
inferredcites →https://doi.org/10.1371/journal.pone.0045170openalex-snapshot
Sampling for Microsatellite-Based Population Genetic Studies: 25 to 30 Individuals per Population Is Enough to Accurately Estimate Allele Frequencies
inferredcites →https://doi.org/10.1371/journal.pone.0088230openalex-snapshot
The Brassicaceae-Specific EWR1 Gene Provides Resistance to Vascular Wilt Pathogens
inferredcites →https://doi.org/10.1371/journal.pone.0196675openalex-snapshot
Phasome analysis of pathogenic and commensal Neisseria species expands the known repertoire of phase variable genes, and highlights common adaptive strategies
inferredcites →https://doi.org/10.1534/genetics.116.193359openalex-snapshot
Variability in a Short Tandem Repeat Mediates Complex Epistatic Interactions in Arabidopsis thaliana
inferredcites →https://doi.org/10.3389/fgene.2015.00345openalex-snapshot
Differential Occurrence of Interactions and Interaction Domains in Proteins Containing Homopolymeric Amino Acid Repeats
inferredcites →https://doi.org/10.3389/fphys.2020.01083openalex-snapshot
Early Light-Inducible Protein (ELIP) Can Enhance Resistance to Cold-Induced Photooxidative Stress in Chlamydomonas reinhardtii
inferredcites →https://doi.org/10.3390/biology5020024openalex-snapshot
Epigenetic Inheritance and Its Role in Evolutionary Biology: Re-Evaluation and New Perspectives
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Genetic diversity and population structure of Pseudomonas savastanoi, an endemic pathogen of the Mediterranean area, revealed up to strain level by the MLVA assay
inferred← citeshttps://doi.org/10.1101/2025.01.24.634728openalex-snapshot
High short tandem repeat mutation recurrence in heat-stressed Arabidopsis thaliana lines
inferred← citeshttps://doi.org/10.35118/apjmbb.2021.029.2.08openalex-snapshot
Analysis of allele frequencies of the selected 15 autosomal STR markers in Tikrit population – Iraq with comparison to Middle Eastern, African, and Europeans
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