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Large scale variation in the rate of de novo mutation, base composition, divergence and diversity in humans

https://doi.org/10.1101/110452
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/humu.21616openalex-snapshot
The large-scale distribution of somatic mutations in cancer genomes
inferredcites →https://doi.org/10.1007/978-3-642-75599-6_1openalex-snapshot
Evolution of DNA Sequence Contributions of Mutational Bias and Selection to the Origin of Chromosomal Compartments
inferredcites →https://doi.org/10.1007/bf02099946openalex-snapshot
Compositional constraints and genome evolution
inferredcites →https://doi.org/10.1007/bf02602928openalex-snapshot
Evolution of chromosome bands: Molecular ecology of noncoding DNA
inferredcites →https://doi.org/10.1016/0022-2836(89)90501-9openalex-snapshot
Chromosome localization-dependent compositional bias of point mutations in Alu repetitive sequences
inferredcites →https://doi.org/10.1016/j.cell.2012.11.019openalex-snapshot
Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation
inferredcites →https://doi.org/10.1016/s0022-5193(05)80092-xopenalex-snapshot
Mammalian DNA replication: Mutation biases and the mutation rate
inferredcites →https://doi.org/10.1016/s0168-9525(02)02669-0openalex-snapshot
Human SNP variability and mutation rate are higher in regions of high recombination
inferredcites →https://doi.org/10.1016/s0378-1119(99)00485-0openalex-snapshot
Isochores and the evolutionary genomics of vertebrates
inferredcites →https://doi.org/10.1038/337283a0openalex-snapshot
Mutation rates differ among regions of the mammalian genome
inferredcites →https://doi.org/10.1038/35080577openalex-snapshot
The evolution of isochores
inferredcites →https://doi.org/10.1038/nature05874openalex-snapshot
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
inferredcites →https://doi.org/10.1038/nature09534openalex-snapshot
A map of human genome variation from population-scale sequencing
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature11273openalex-snapshot
Chromatin organization is a major influence on regional mutation rates in human cancer cells
inferredcites →https://doi.org/10.1038/nature11396openalex-snapshot
Rate of de novo mutations and the importance of father’s age to disease risk
inferredcites →https://doi.org/10.1038/nature11632openalex-snapshot
An integrated map of genetic variation from 1,092 human genomes
inferredcites →https://doi.org/10.1038/nature14173openalex-snapshot
Differential DNA mismatch repair underlies mutation rate variation across the human genome
inferredcites →https://doi.org/10.1038/nature14221openalex-snapshot
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
inferredcites →https://doi.org/10.1038/ncomms10486openalex-snapshot
New observations on maternal age effect on germline de novo mutations
inferredcites →https://doi.org/10.1038/ncomms1982openalex-snapshot
DNA replication timing and selection shape the landscape of nucleotide variation in cancer genomes
inferredcites →https://doi.org/10.1038/ng.3292openalex-snapshot
Genome-wide patterns and properties of de novo mutations in humans
inferredcites →https://doi.org/10.1038/ng.3511openalex-snapshot
An expanded sequence context model broadly explains variability in polymorphism levels across the human genome
inferredcites →https://doi.org/10.1038/ng.862openalex-snapshot
Variation in genome-wide mutation rates within and between human families
inferredcites →https://doi.org/10.1038/ng0302-241openalex-snapshot
Unraveling heterochromatin
inferredcites →https://doi.org/10.1038/ng917openalex-snapshot
A high-resolution recombination map of the human genome
inferredcites →https://doi.org/10.1038/nrg3098openalex-snapshot
Variation in the mutation rate across mammalian genomes
inferredcites →https://doi.org/10.1073/pnas.0912402107openalex-snapshot
Sequencing newly replicated DNA reveals widespread plasticity in human replication timing
inferredcites →https://doi.org/10.1073/pnas.1416622112openalex-snapshot
Crossovers are associated with mutation and biased gene conversion at recombination hotspots
inferredcites →https://doi.org/10.1073/pnas.1418652112openalex-snapshot
Evidence for recent, population-specific evolution of the human mutation rate
inferredcites →https://doi.org/10.1086/375657openalex-snapshot
A Neutral Explanation for the Correlation of Diversity with Recombination Rates in Humans
inferredcites →https://doi.org/10.1093/gbe/evr058openalex-snapshot
Ongoing GC-Biased Evolution Is Widespread in the Human Genome and Enriched Near Recombination Hot Spots
inferredcites →https://doi.org/10.1093/genetics/152.2.675openalex-snapshot
Evidence of Selection on Silent Site Base Composition in Mammals: Potential Implications for the Evolution of Isochores and Junk DNA
inferredcites →https://doi.org/10.1093/molbev/msh070openalex-snapshot
Recombination Drives the Evolution of GC-Content in the Human Genome
inferredcites →https://doi.org/10.1093/molbev/msn148openalex-snapshot
Estimation of Hominoid Ancestral Population Sizes under Bayesian Coalescent Models Incorporating Mutation Rate Variation and Sequencing Errors
inferredcites →https://doi.org/10.1093/molbev/msx060openalex-snapshot
Evolution of local mutation rate and its determinants
inferredcites →https://doi.org/10.1093/nar/gkw268openalex-snapshot
The mutation spectrum in genomic late replication domains shapes mammalian GC content
inferredcites →https://doi.org/10.1098/rspb.1993.0071openalex-snapshot
Recombination and mammalian genome evolution
inferredcites →https://doi.org/10.1101/gr.076554.108openalex-snapshot
Enredo and Pecan: Genome-wide mammalian consistency-based multiple alignment with paralogs
inferredcites →https://doi.org/10.1101/gr.154971.113openalex-snapshot
The influence of genomic context on mutation patterns in the human genome inferred from rare variants
inferredcites →https://doi.org/10.1101/gr.185488.114openalex-snapshot
Quantification of GC-biased gene conversion in the human genome
inferredcites →https://doi.org/10.1101/gr.1933104openalex-snapshot
Aligning Multiple Genomic Sequences With the Threaded Blockset Aligner
inferredcites →https://doi.org/10.1101/gr.3461105openalex-snapshot
Why do human diversity levels vary at a megabase scale?
inferredcites →https://doi.org/10.1101/gr.6081407openalex-snapshot
Identification of higher-order functional domains in the human ENCODE regions
inferredcites →https://doi.org/10.1111/j.1469-1809.1946.tb02367.xopenalex-snapshot
THE MUTATION RATE OF THE GENE FOR HAEMOPHILIA, AND ITS SEGREGATION RATIOS IN MALES AND FEMALES
inferredcites →https://doi.org/10.1126/science.1256442openalex-snapshot
Recombination initiation maps of individual human genomes
inferredcites →https://doi.org/10.1142/9789812799623_0012openalex-snapshot
SCORING PAIRWISE GENOMIC SEQUENCE ALIGNMENTS
inferredcites →https://doi.org/10.1146/annurev-genom-082908-150001openalex-snapshot
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
inferredcites →https://doi.org/10.1186/gb-2008-9-4-r76openalex-snapshot
Human-macaque comparisons illuminate variation in neutral substitution rates
inferredcites →https://doi.org/10.1371/journal.pbio.2000744openalex-snapshot
Human Germline Mutation and the Erratic Evolutionary Clock
inferredcites →https://doi.org/10.1371/journal.pgen.1000071openalex-snapshot
The Impact of Recombination on Nucleotide Substitutions in the Human Genome
inferredcites →https://doi.org/10.1371/journal.pgen.1000336openalex-snapshot
Pervasive Hitchhiking at Coding and Regulatory Sites in Humans
inferredcites →https://doi.org/10.1371/journal.pgen.1000471openalex-snapshot
Widespread Genomic Signatures of Natural Selection in Hominid Evolution
inferredcites →https://doi.org/10.1371/journal.pgen.1006549openalex-snapshot
Inference of Candidate Germline Mutator Loci in Humans from Genome-Wide Haplotype Data
inferredcites →https://doi.org/10.1534/g3.114.012849openalex-snapshot
How Much of the Variation in the Mutation Rate Along the Human Genome Can Be Explained?
inferredcites →https://doi.org/10.1534/genetics.111.132654openalex-snapshot
Quantifying the Variation in the Effective Population Size Within a Genome
inferredcites →https://doi.org/10.7554/elife.24284openalex-snapshot
Rapid evolution of the human mutation spectrum
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