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Population dynamics of immune repertoires

https://doi.org/10.1101/112755
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/jtbi.1994.1160openalex-snapshot
T Cell Repertoires and Competitive Exclusion
inferredcites →https://doi.org/10.1006/jtbi.1995.0165openalex-snapshot
Towards a general function describing t cell proliferation
inferredcites →https://doi.org/10.1006/jtbi.2001.2379openalex-snapshot
Resource Competition Determines Selection of B Cell Repertoires
inferredcites →https://doi.org/10.1016/j.celrep.2015.04.051openalex-snapshot
T Cells Integrate Local and Global Cues to Discriminate between Structurally Similar Antigens
inferredcites →https://doi.org/10.1016/j.exger.2006.11.016openalex-snapshot
Aging and T-cell diversity☆
inferredcites →https://doi.org/10.1016/j.it.2014.04.005openalex-snapshot
Studying the antibody repertoire after vaccination: practical applications
inferredcites →https://doi.org/10.1016/j.jtbi.2015.10.016openalex-snapshot
How many TCR clonotypes does a body maintain?
inferredcites →https://doi.org/10.1016/s1074-7613(00)80093-xopenalex-snapshot
Low-Affinity Ligands for the TCR Drive Proliferation of Mature CD8+ T Cells in Lymphopenic Hosts
inferredcites →https://doi.org/10.1017/cbo9780511623486openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1017/s0016672300014634openalex-snapshot
The hitch-hiking effect of a favourable gene
inferredcites →https://doi.org/10.1038/80868openalex-snapshot
Interleukin-7 mediates the homeostasis of naïve and memory CD8 T cells in vivo
inferredcites →https://doi.org/10.1038/nature13087openalex-snapshot
A predictive fitness model for influenza
inferredcites →https://doi.org/10.1038/nmeth.2960openalex-snapshot
Towards error-free profiling of immune repertoires
inferredcites →https://doi.org/10.1038/nri700openalex-snapshot
Modelling viral and immune system dynamics
inferredcites →https://doi.org/10.1038/scientificamerican1179-98openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1038/srep14629openalex-snapshot
Computational analysis of stochastic heterogeneity in PCR amplification efficiency revealed by single molecule barcoding
inferredcites →https://doi.org/10.1073/pnas.1001705107openalex-snapshot
Maximum entropy models for antibody diversity
inferredcites →https://doi.org/10.1073/pnas.1203916109openalex-snapshot
Chromatin conformation governs T-cell receptor Jβ gene segment usage
inferredcites →https://doi.org/10.1073/pnas.1209283110openalex-snapshot
Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age
inferredcites →https://doi.org/10.1073/pnas.1212755109openalex-snapshot
Statistical inference of the generation probability of T-cell receptors from sequence repertoires
inferredcites →https://doi.org/10.1073/pnas.1312146110openalex-snapshot
Genetic measurement of memory B-cell recall using antibody repertoire sequencing
inferredcites →https://doi.org/10.1073/pnas.1323862111openalex-snapshot
High-resolution antibody dynamics of vaccine-induced immune responses
inferredcites →https://doi.org/10.1073/pnas.1409572111openalex-snapshot
Quantifying selection in immune receptor repertoires
inferredcites →https://doi.org/10.1073/pnas.1421827112openalex-snapshot
How a well-adapted immune system is organized
inferredcites →https://doi.org/10.1073/pnas.1512977112openalex-snapshot
Fluctuating fitness shapes the clone-size distribution of immune repertoires
inferredcites →https://doi.org/10.1073/pnas.1517813113openalex-snapshot
Hierarchy and extremes in selections from pools of randomized proteins
inferredcites →https://doi.org/10.1073/pnas.161126098openalex-snapshot
IL-7 is critical for homeostatic proliferation and survival of naïve T cells
inferredcites →https://doi.org/10.1088/1742-5468/2008/04/p04014openalex-snapshot
Evolution in random fitness landscapes: the infinite sites model
inferredcites →https://doi.org/10.1088/1742-5468/2013/01/p01008openalex-snapshot
Emergence of clones in sexual populations
inferredcites →https://doi.org/10.1093/bioinformatics/btu523openalex-snapshot
Tracking global changes induced in the CD4 T-cell receptor repertoire by immunization with a complex antigen using short stretches of CDR3 protein sequence
inferredcites →https://doi.org/10.1093/intimm/9.5.779openalex-snapshot
Competitive control of the self-renewing T cell repertoire
inferredcites →https://doi.org/10.1097/01.shk.0000258367.85587.7bopenalex-snapshot
THE IMMUNE RESPONSE
inferredcites →https://doi.org/10.1098/rstb.2014.0243openalex-snapshot
Inferring processes underlying B-cell repertoire diversity
inferredcites →https://doi.org/10.1098/rstb.2014.0244openalex-snapshot
Quantifying evolutionary constraints on B-cell affinity maturation
inferredcites →https://doi.org/10.1101/gr.115428.110openalex-snapshot
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
inferredcites →https://doi.org/10.1126/science.1170020openalex-snapshot
High-Throughput Sequencing of the Zebrafish Antibody Repertoire
inferredcites →https://doi.org/10.1126/science.42.1074.161openalex-snapshot
The Proceedings of the National Academy of Sciences
inferredcites →https://doi.org/10.1126/scitranslmed.3002536openalex-snapshot
Deep Sequencing of the Human TCRγ and TCRβ Repertoires Suggests that TCRβ Rearranges After αβ and γδ T Cell Commitment
inferredcites →https://doi.org/10.1146/annurev.genet.39.073003.112420openalex-snapshot
Molecular Signatures of Natural Selection
inferredcites →https://doi.org/10.1182/blood-2008-10-184184openalex-snapshot
Quantifying the development of the peripheral naive CD4+ T-cell pool in humans
inferredcites →https://doi.org/10.1182/blood-2009-04-217604openalex-snapshot
Comprehensive assessment of T-cell receptor β-chain diversity in αβ T cells
inferredcites →https://doi.org/10.1186/s12915-015-0191-8openalex-snapshot
Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaques
inferredcites →https://doi.org/10.1371/journal.pgen.1006171openalex-snapshot
Host-Pathogen Coevolution and the Emergence of Broadly Neutralizing Antibodies in Chronic Infections
inferredcites →https://doi.org/10.1371/journal.pone.0049554openalex-snapshot
Heterogeneity in Thymic Emigrants: Implications for Thymectomy and Immunosenescence
inferredcites →https://doi.org/10.1371/journal.pone.0086986openalex-snapshot
Revealing Individual Signatures of Human T Cell CDR3 Sequence Repertoires with Kidera Factors
inferredcites →https://doi.org/10.1371/journal.pone.0089680openalex-snapshot
A Selected Core Microbiome Drives the Early Stages of Three Popular Italian Cheese Manufactures
inferredcites →https://doi.org/10.1371/journal.pone.0108658openalex-snapshot
Assessing T Cell Clonal Size Distribution: A Non-Parametric Approach
inferredcites →https://doi.org/10.3389/fimmu.2013.00358openalex-snapshot
Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data
inferredcites →https://doi.org/10.4049/jimmunol.1302064openalex-snapshot
Age-Related Decrease in TCR Repertoire Diversity Measured with Deep and Normalized Sequence Profiling
inferredcites →https://doi.org/10.4049/jimmunol.170.2.672openalex-snapshot
Cutting Edge: Homeostatic Proliferation of Peripheral T Lymphocytes Is Regulated by Clonal Competition

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1007/s11538-019-00630-zopenalex-snapshot
A Mathematical Model of the Effects of Aging on Naive T Cell Populations and Diversity
inferred← citeshttps://doi.org/10.1016/j.coisb.2019.10.001openalex-snapshot
How many different clonotypes do immune repertoires contain?
inferred← citeshttps://doi.org/10.1016/j.physrep.2020.01.001openalex-snapshot
Quantitative immunology for physicists
inferred← citeshttps://doi.org/10.1101/674937openalex-snapshot
How heterogeneous thymic output and homeostatic proliferation shape naive T cell receptor clone abundance distributions
inferred← citeshttps://doi.org/10.48550/arxiv.1901.00280openalex-snapshot
A mathematical model of the effects of aging on naive T-cell population and diversity
inferred← citeshttps://doi.org/10.70675/6f7a4d22z6762z4d3ezbc4czfd218ca968ccopenalex-snapshot
Statistical inference of evolutionary paths
inferred← citeshttps://doi.org/10.70675/f03bfe22z8034z4f11z806aze398fbd27f8copenalex-snapshot
Optimal immune systems : a ressource allocation and information processing view of immune defense
inferred← citeshttps://doi.org/10.7554/elife.49900openalex-snapshot
The naive T-cell receptor repertoire has an extremely broad distribution of clone sizes
inferred← citeshttps://doi.org/10.7554/elife.61639openalex-snapshot
Early life imprints the hierarchy of T cell clone sizes
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