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How heterogeneous thymic output and homeostatic proliferation shape naive T cell receptor clone abundance distributions
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-3-030-57204-4_12openalex-snapshot
Population Dynamics of Immune Repertoires
inferredcites →https://doi.org/10.1007/978-3-319-45833-5_3openalex-snapshot
Sampling from T Cell Receptor Repertoires
inferredcites →https://doi.org/10.1007/s10955-018-2128-4openalex-snapshot
Exact Steady-State Distributions of Multispecies Birth–Death–Immigration Processes: Effects of Mutations and Carrying Capacity on Diversity
inferredcites →https://doi.org/10.1016/0303-2647(96)01618-8openalex-snapshot
Zipf-scaling behavior in the immune system
inferredcites →https://doi.org/10.1016/j.immuni.2008.11.002openalex-snapshot
Homeostasis of Naive and Memory T Cells
inferredcites →https://doi.org/10.1016/j.immuni.2012.02.006openalex-snapshot
Maintenance of Peripheral Naive T Cells Is Sustained by Thymus Output in Mice but Not Humans
inferredcites →https://doi.org/10.1016/j.jtbi.2015.10.016openalex-snapshot
How many TCR clonotypes does a body maintain?
inferredcites →https://doi.org/10.1038/334395a0openalex-snapshot
T-cell antigen receptor genes and T-cell recognition
inferredcites →https://doi.org/10.1038/80868openalex-snapshot
Interleukin-7 mediates the homeostasis of naïve and memory CD8 T cells in vivo
inferredcites →https://doi.org/10.1038/nri3567openalex-snapshot
Human memory T cells: generation, compartmentalization and homeostasis
inferredcites →https://doi.org/10.1038/s41467-018-02832-wopenalex-snapshot
High-throughput immune repertoire analysis with IGoR
inferredcites →https://doi.org/10.1038/s41577-018-0001-yopenalex-snapshot
The full spectrum of human naive T cells
inferredcites →https://doi.org/10.1073/pnas.0400606101openalex-snapshot
Spontaneous proliferation, a response of naïve CD4 T cells determined by the diversity of the memory cell repertoire
inferredcites →https://doi.org/10.1073/pnas.1001705107openalex-snapshot
Maximum entropy models for antibody diversity
inferredcites →https://doi.org/10.1073/pnas.1209283110openalex-snapshot
Peripheral selection rather than thymic involution explains sudden contraction in naive CD4 T-cell diversity with age
inferredcites →https://doi.org/10.1073/pnas.1409155111openalex-snapshot
Diversity and clonal selection in the human T-cell repertoire
inferredcites →https://doi.org/10.1073/pnas.1512977112openalex-snapshot
Fluctuating fitness shapes the clone-size distribution of immune repertoires
inferredcites →https://doi.org/10.1073/pnas.1517246112openalex-snapshot
Temporal fate mapping reveals age-linked heterogeneity in naive T lymphocytes in mice
inferredcites →https://doi.org/10.1073/pnas.161126098openalex-snapshot
IL-7 is critical for homeostatic proliferation and survival of naïve T cells
inferredcites →https://doi.org/10.1073/pnas.1812800116openalex-snapshot
Regulation of T cell expansion by antigen presentation dynamics
inferredcites →https://doi.org/10.1088/1751-8121/aadcb4openalex-snapshot
Immigration-induced phase transition in a regulated multispecies birth-death process
inferredcites →https://doi.org/10.1093/bioinformatics/btw339openalex-snapshot
RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data
inferredcites →https://doi.org/10.1097/qad.0000000000001010openalex-snapshot
Supranormal thymic output up to 2 decades after HIV-1 infection
inferredcites →https://doi.org/10.1098/rstb.2014.0291openalex-snapshot
Estimating T-cell repertoire diversity: limitations of classical estimators and a new approach
inferredcites →https://doi.org/10.1101/112755openalex-snapshot
Population dynamics of immune repertoires
inferredcites →https://doi.org/10.1101/gr.115428.110openalex-snapshot
Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes
inferredcites →https://doi.org/10.1111/acel.12311openalex-snapshot
Lymphocyte maintenance during healthy aging requires no substantial alterations in cellular turnover
inferredcites →https://doi.org/10.1111/imr.12696openalex-snapshot
Some deterministic and stochastic mathematical models of naïve T‐cell homeostasis
inferredcites →https://doi.org/10.1126/science.1170020openalex-snapshot
High-Throughput Sequencing of the Zebrafish Antibody Repertoire
inferredcites →https://doi.org/10.1126/science.131.3409.1292openalex-snapshot
The Competitive Exclusion Principle
inferredcites →https://doi.org/10.1126/science.286.5441.958openalex-snapshot
A Direct Estimate of the Human αβ T Cell Receptor Diversity
inferredcites →https://doi.org/10.1146/annurev-immunol-030409-101253openalex-snapshot
On the Composition of the Preimmune Repertoire of T Cells Specific for Peptide–Major Histocompatibility Complex Ligands
inferredcites →https://doi.org/10.1182/blood-2009-04-217604openalex-snapshot
Comprehensive assessment of T-cell receptor β-chain diversity in αβ T cells
inferredcites →https://doi.org/10.1186/s12915-015-0191-8openalex-snapshot
Mechanisms of blood homeostasis: lineage tracking and a neutral model of cell populations in rhesus macaques
inferredcites →https://doi.org/10.1371/journal.pbio.2003949openalex-snapshot
Age is not just a number: Naive T cells increase their ability to persist in the circulation over time
inferredcites →https://doi.org/10.1371/journal.pcbi.1000396openalex-snapshot
The Dynamics of T-Cell Receptor Repertoire Diversity Following Thymus Transplantation for DiGeorge Anomaly
inferredcites →https://doi.org/10.1371/journal.pcbi.1005110openalex-snapshot
Zipf’s Law Arises Naturally When There Are Underlying, Unobserved Variables
inferredcites →https://doi.org/10.1371/journal.pcbi.1006489openalex-snapshot
Modeling large fluctuations of thousands of clones during hematopoiesis: The role of stem cell self-renewal and bursty progenitor dynamics in rhesus macaque
inferredcites →https://doi.org/10.1371/journal.pcbi.1006571openalex-snapshot
powerTCR: A model-based approach to comparative analysis of the clone size distribution of the T cell receptor repertoire
inferredcites →https://doi.org/10.2307/409735openalex-snapshot
Human behavior and the principle of least effort: An introduction to human ecology. By George Kingsley Zipf. Pp. xi, 573. Cambridge, Mass.: Addison-Wesley Press, 1949.
inferredcites →https://doi.org/10.3389/fimmu.2013.00434openalex-snapshot
Mathematical Model of Naive T Cell Division and Survival IL-7 Thresholds
inferredcites →https://doi.org/10.3389/fimmu.2013.00485openalex-snapshot
Estimating the Diversity, Completeness, and Cross-Reactivity of the T Cell Repertoire
inferredcites →https://doi.org/10.3389/fimmu.2014.00013openalex-snapshot
Theories and Quantification of Thymic Selection
inferredcites →https://doi.org/10.3389/fimmu.2017.01267openalex-snapshot
Quantitative Characterization of the T Cell Receptor Repertoire of Naïve and Memory Subsets Using an Integrated Experimental and Computational Pipeline Which Is Robust, Economical, and Versatile
inferredcites →https://doi.org/10.3389/fimmu.2018.01618openalex-snapshot
The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging
inferredcites →https://doi.org/10.3389/fped.2016.00119openalex-snapshot
Establishment and Maintenance of the Human Naïve CD4+ T-Cell Compartment
inferredcites →https://doi.org/10.3934/mbe.2020002openalex-snapshot
Dynamics of T cell receptor distributions following acute thymic atrophy and resumption
inferredcites →https://doi.org/10.4049/jimmunol.1600005openalex-snapshot
Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians
inferredcites →https://doi.org/10.4049/jimmunol.170.8.3994openalex-snapshot
A Fractal Clonotype Distribution in the CD8+ Memory T Cell Repertoire Could Optimize Potential for Immune Responses
inferredcites →https://doi.org/10.7554/elife.23013openalex-snapshot
Memory CD4 T cell subsets are kinetically heterogeneous and replenished from naive T cells at high levels
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1088/1478-3975/ab6754openalex-snapshot
Diversity in biology: definitions, quantification and models
inferred← citeshttps://doi.org/10.1103/physrevresearch.3.013222openalex-snapshot
Understanding adaptive immune system as reinforcement learning
inferred← citeshttps://doi.org/10.3929/ethz-b-000387958openalex-snapshot
Diversity in Biology: definitions, quantification, and models
inferred← citeshttps://doi.org/10.7554/elife.61639openalex-snapshot
Early life imprints the hierarchy of T cell clone sizes
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