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Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s10201-011-0362-4openalex-snapshot
Surveillance of fish species composition using environmental DNA
inferredcites →https://doi.org/10.1007/s10592-015-0775-4openalex-snapshot
The ecology of environmental DNA and implications for conservation genetics
inferredcites →https://doi.org/10.1007/s10641-007-9300-zopenalex-snapshot
Seasonal and interannual variation of subtidal fish assemblages in Wakasa Bay with reference to the warming trend in the Sea of Japan
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.017openalex-snapshot
Fish environmental DNA is more concentrated in aquatic sediments than surface water
inferredcites →https://doi.org/10.1016/j.biocon.2014.11.023openalex-snapshot
Monitoring the near-extinct European weather loach in Denmark based on environmental DNA from water samples
inferredcites →https://doi.org/10.1016/j.foreco.2012.01.013openalex-snapshot
Camera-trapping rates of mammals and birds in a Bornean tropical rainforest under sustainable forest management
inferredcites →https://doi.org/10.1016/j.ijnurstu.2009.10.001openalex-snapshot
Statistical methods for assessing agreement between two methods of clinical measurement
inferredcites →https://doi.org/10.1016/j.mcp.2004.07.006openalex-snapshot
Development of a novel internal positive control for Taqman® based assays
inferredcites →https://doi.org/10.1016/j.soilbio.2016.02.003openalex-snapshot
A method for simultaneous measurement of soil bacterial abundances and community composition via 16S rRNA gene sequencing
inferredcites →https://doi.org/10.1016/s0140-6736(86)90837-8openalex-snapshot
STATISTICAL METHODS FOR ASSESSING AGREEMENT BETWEEN TWO METHODS OF CLINICAL MEASUREMENT
inferredcites →https://doi.org/10.1038/ncomms12544openalex-snapshot
Environmental DNA reveals that rivers are conveyer belts of biodiversity information
inferredcites →https://doi.org/10.1038/ncomms14087openalex-snapshot
Annual time-series analysis of aqueous eDNA reveals ecologically relevant dynamics of lake ecosystem biodiversity
inferredcites →https://doi.org/10.1038/s41598-017-17333-xopenalex-snapshot
Estimating and mitigating amplification bias in qualitative and quantitative arthropod metabarcoding
inferredcites →https://doi.org/10.1038/s41598-018-22817-5openalex-snapshot
Demonstration of the potential of environmental DNA as a tool for the detection of avian species
inferredcites →https://doi.org/10.1038/srep40368openalex-snapshot
Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr507openalex-snapshot
FLASH: fast length adjustment of short reads to improve genome assemblies
inferredcites →https://doi.org/10.1093/molbev/mst141openalex-snapshot
MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline
inferredcites →https://doi.org/10.1098/rsbl.2008.0118openalex-snapshot
Species detection using environmental DNA from water samples
inferredcites →https://doi.org/10.1098/rsos.150088openalex-snapshot
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
inferredcites →https://doi.org/10.1111/1365-2664.12392openalex-snapshot
A basin‐scale application of environmental DNA assessment for rare endemic species and closely related exotic species in rivers: a case study of giant salamanders in Japan
inferredcites →https://doi.org/10.1111/1755-0998.12433openalex-snapshot
Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/1755-0998.12490openalex-snapshot
Quantitative DNA metabarcoding: improved estimates of species proportional biomass using correction factors derived from control material
inferredcites →https://doi.org/10.1111/1755-0998.12690openalex-snapshot
Environmental DNA enables detection of terrestrial mammals from forest pond water
inferredcites →https://doi.org/10.1111/j.1365-2672.2012.05384.xopenalex-snapshot
PCR inhibitors - occurrence, properties and removal
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05418.xopenalex-snapshot
Monitoring endangered freshwater biodiversity using environmental DNA
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05470.xopenalex-snapshot
Towards next‐generation biodiversity assessment using DNA metabarcoding
inferredcites →https://doi.org/10.1111/j.1755-263x.2010.00158.xopenalex-snapshot
“Sight‐unseen” detection of rare aquatic species using environmental DNA
inferredcites →https://doi.org/10.1111/mec.13660openalex-snapshot
Environmental DNA metabarcoding of lake fish communities reflects long‐term data from established survey methods
inferredcites →https://doi.org/10.1126/science.1251156openalex-snapshot
Harnessing DNA to improve environmental management
inferredcites →https://doi.org/10.1128/aem.00815-08openalex-snapshot
In Situ Detection of Freshwater Fungi in an Alpine Stream by New Taxon-Specific Fluorescence In Situ Hybridization Probes
inferredcites →https://doi.org/10.1139/cjfas-2015-0262openalex-snapshot
Active and passive environmental DNA surveillance of aquatic invasive species
inferredcites →https://doi.org/10.1139/cjfas-2017-0114openalex-snapshot
At the forefront: evidence of the applicability of using environmental DNA to quantify the abundance of fish populations in natural lentic waters with additional sampling considerations
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1371/journal.pone.0023398openalex-snapshot
Persistence of Environmental DNA in Freshwater Ecosystems
inferredcites →https://doi.org/10.1371/journal.pone.0035868openalex-snapshot
Estimation of Fish Biomass Using Environmental DNA
inferredcites →https://doi.org/10.1371/journal.pone.0056584openalex-snapshot
Using Environmental DNA to Estimate the Distribution of an Invasive Fish Species in Ponds
inferredcites →https://doi.org/10.1371/journal.pone.0086175openalex-snapshot
Using Environmental DNA to Census Marine Fishes in a Large Mesocosm
inferredcites →https://doi.org/10.1371/journal.pone.0114639openalex-snapshot
The Release Rate of Environmental DNA from Juvenile and Adult Fish
inferredcites →https://doi.org/10.1371/journal.pone.0130324openalex-snapshot
Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol
inferredcites →https://doi.org/10.1371/journal.pone.0130965openalex-snapshot
Development and Validation of Environmental DNA (eDNA) Markers for Detection of Freshwater Turtles
inferredcites →https://doi.org/10.1371/journal.pone.0149786openalex-snapshot
Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan
inferredcites →https://doi.org/10.1371/journal.pone.0175186openalex-snapshot
Aquatic environmental DNA detects seasonal fish abundance and habitat preference in an urban estuary
inferredcites →https://doi.org/10.1371/journal.pone.0176608openalex-snapshot
Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance
inferredcites →https://doi.org/10.32614/cran.package.blandaltmanlehopenalex-snapshot
BlandAltmanLeh: Plots (Slightly Extended) Bland-Altman Plots
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Regional‐scale effects of deer‐induced forest degradation on river ecosystem dynamics
inferred← citeshttps://doi.org/10.1002/ece3.10812openalex-snapshot
Revisiting the species list of freshwater fish in Israel based on DNA barcoding
inferred← citeshttps://doi.org/10.1002/ece3.10817openalex-snapshot
Molecular analyses of carangid fish diets reveal inter‐predation, dietary overlap, and the importance of early life stages in trophic ecology
inferred← citeshttps://doi.org/10.1002/ece3.4013openalex-snapshot
Needle in a haystack? A comparison of eDNA metabarcoding and targeted qPCR for detection of the great crested newt ( Triturus cristatus )
inferred← citeshttps://doi.org/10.1002/ece3.72684openalex-snapshot
Are Sponges Good Natural Sentinels for Monitoring Fish Diversity in Antarctic Coastal Waters?
inferred← citeshttps://doi.org/10.1002/ece3.7658openalex-snapshot
Environmental DNA metabarcoding primers for freshwater fish detection and quantification: In silico and in tanks
inferred← citeshttps://doi.org/10.1002/edn3.129openalex-snapshot
Fine‐scale environmental heterogeneity shapes fluvial fish communities as revealed by eDNA metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.135openalex-snapshot
Using environmental DNA for biomonitoring of freshwater fish communities: Comparison with established gillnet surveys in a boreal hydroelectric impoundment
inferred← citeshttps://doi.org/10.1002/edn3.184openalex-snapshot
The applicability of eDNA metabarcoding approaches for sessile benthic surveying in the Kimberley region, north‐western Australia
inferred← citeshttps://doi.org/10.1002/edn3.185openalex-snapshot
Environmental DNA (eDNA) as a tool for assessing fish biomass: A review of approaches and future considerations for resource surveys
inferred← citeshttps://doi.org/10.1002/edn3.192openalex-snapshot
Degradation modeling of water environmental DNA: Experiments on multiple DNA sources in pond and seawater
inferred← citeshttps://doi.org/10.1002/edn3.221openalex-snapshot
Fish community shifts along a strong fluvial environmental gradient revealed by eDNA metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.224openalex-snapshot
Proper environmental DNA metabarcoding data transformation reveals temporal stability of fish communities in a dendritic river system
inferred← citeshttps://doi.org/10.1002/edn3.266openalex-snapshot
Effect of biotic and abiotic factors on the production and degradation of fish environmental DNA: An experimental evaluation
inferred← citeshttps://doi.org/10.1002/edn3.31openalex-snapshot
Discovery of an unrecorded population of Yamato salamander (Hynobius vandenburghi) by GIS and eDNA analysis
inferred← citeshttps://doi.org/10.1002/edn3.337openalex-snapshot
An efficient early‐pooling protocol for environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.345openalex-snapshot
Differences in the genetic structure between and within two landlocked Ayu groups with different migration patterns in Lake Biwa revealed by environmental DNA analysis
inferred← citeshttps://doi.org/10.1002/edn3.346openalex-snapshot
Relationships between the eDNA concentration obtained from metabarcoding and stream fish abundance estimated by the removal method under field conditions
inferred← citeshttps://doi.org/10.1002/edn3.356openalex-snapshot
Moving environmental DNA (eDNA) technologies from benchtop to the field using passive sampling and PDQeX extraction
inferred← citeshttps://doi.org/10.1002/edn3.376openalex-snapshot
12S gene metabarcoding with DNA standard quantifies marine bony fish environmental DNA , identifies threshold for reproducible detection, and overcomes distortion due to amplification of non‐fish DNA
inferred← citeshttps://doi.org/10.1002/edn3.394openalex-snapshot
Environmental DNA of Antarctic krill (Euphausia superba): Measuring DNA fragmentation adds a temporal aspect to quantitative surveys
inferred← citeshttps://doi.org/10.1002/edn3.40openalex-snapshot
How can eDNA contribute in riverine macroinvertebrate assessment? A metabarcoding approach in the Nalón River (Asturias, Northern Spain)
inferred← citeshttps://doi.org/10.1002/edn3.408openalex-snapshot
Evaluation of genetic diversity in an endangered fish Gnathopogon caerulescens using environmental DNA and its potential use in fish conservation
inferred← citeshttps://doi.org/10.1002/edn3.41openalex-snapshot
A performance evaluation of targeted eDNA and eDNA metabarcoding analyses for freshwater fishes
inferred← citeshttps://doi.org/10.1002/edn3.413openalex-snapshot
eDNA metabarcoding from aquatic biofilms allows studying spatial and temporal fluctuations of fish communities from Lake Geneva
inferred← citeshttps://doi.org/10.1002/edn3.425openalex-snapshot
Evaluation of community science monitoring with environmental DNA for marine fish species: “Fish survey project using environmental DNA ”
inferred← citeshttps://doi.org/10.1002/edn3.428openalex-snapshot
New boundaries: Redefining the geographical range of a threatened fish through environmental DNA survey
inferred← citeshttps://doi.org/10.1002/edn3.486openalex-snapshot
High frequency environmental DNA metabarcoding provides rapid and effective monitoring of fish community dynamics
inferred← citeshttps://doi.org/10.1002/edn3.49openalex-snapshot
Water stratification in the marine biome restricts vertical environmental DNA (eDNA) signal dispersal
inferred← citeshttps://doi.org/10.1002/edn3.5openalex-snapshot
Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake
inferred← citeshttps://doi.org/10.1002/edn3.500openalex-snapshot
Unveiling the hidden diversity of marine eukaryotes in the Ross Sea: A comparative analysis of seawater and sponge eDNA surveys
inferred← citeshttps://doi.org/10.1002/edn3.515openalex-snapshot
Single metabarcoding multiplex captures community‐level freshwater biodiversity and beyond
inferred← citeshttps://doi.org/10.1002/edn3.597openalex-snapshot
Using Gap Visualization to Navigate Multivariate Metabarcode Data, Select Primer Pairs, and Enhance Reference Data Quality
inferred← citeshttps://doi.org/10.1002/edn3.67openalex-snapshot
Analysis of a coastal North Sea fish community: Comparison of aquatic environmental DNA concentrations to fish catches
inferred← citeshttps://doi.org/10.1002/edn3.70031openalex-snapshot
Bottom Trawling and Multi‐Marker eDNA Metabarcoding Surveys Reveal Highly Diverse Vertebrate and Crustacean Communities: A Case Study in an Urbanized Subtropical Estuary
inferred← citeshttps://doi.org/10.1002/edn3.70101openalex-snapshot
In Vitro Passive eDNA Sampling Provides a Cost‐Effective Alternative for Large Scale Sample Collection
inferred← citeshttps://doi.org/10.1002/edn3.70193openalex-snapshot
μCeta: A Set of Cetacean‐Specific Primers for Environmental DNA Metabarcoding With Minimal Amplification of Non‐Target Vertebrates
inferred← citeshttps://doi.org/10.1002/edn3.70250openalex-snapshot
Improving Species Abundance Information From River eDNA Metabarcoding Data
inferred← citeshttps://doi.org/10.1002/edn3.70251openalex-snapshot
Applying Environmental DNA Metabarcoding to Calculate an Index of Biotic Integrity for Freshwater Fish
inferred← citeshttps://doi.org/10.1002/edn3.70252openalex-snapshot
ANEMONE Global's First eDNA ‐Based Assessment: Insights Toward a Standardized Global Monitoring Network
inferred← citeshttps://doi.org/10.1002/edn3.70253openalex-snapshot
Comparison of Environmental DNA Metabarcoding and Trawl Data Highlights Gear Selectivity of Marine Demersal Fish Surveys on the Faroese Plateau
inferred← citeshttps://doi.org/10.1002/edn3.70279openalex-snapshot
Estuarine Cline in Fish eDNA Composition and Ecotone Between the Inside and Outside of Locally Enclosed Areas
inferred← citeshttps://doi.org/10.1002/edn3.70292openalex-snapshot
Nationwide Environmental DNA Haplotyping Illuminates the Range Expansion of Three Invasive Black Bass Species in Japan
inferred← citeshttps://doi.org/10.1002/edn3.8openalex-snapshot
Rapid assessment of coral cover from environmental DNA in Hawai'i
inferred← citeshttps://doi.org/10.1002/edn3.90openalex-snapshot
Macroinvertebrate community diversity and habitat quality relationships along a large river from targeted eDNA metabarcode assays
inferred← citeshttps://doi.org/10.1007/978-3-031-83903-0_14openalex-snapshot
Detecting and Assessing Aquatic Parasite Diversity Using Environmental DNA
inferred← citeshttps://doi.org/10.1007/s00227-017-3147-4openalex-snapshot
Seawater environmental DNA reflects seasonality of a coastal fish community
inferred← citeshttps://doi.org/10.1007/s10201-021-00676-wopenalex-snapshot
Pre-centrifugation before DNA extraction mitigates extraction efficiency reduction of environmental DNA caused by the preservative solution (benzalkonium chloride) remaining in the filters
inferred← citeshttps://doi.org/10.1007/s10201-025-00782-zopenalex-snapshot
Reconstruction of paleo-environments by two aquatic plants: eDNA analysis in lake sediment cores
inferred← citeshttps://doi.org/10.1007/s10228-020-00776-0openalex-snapshot
Environmental DNA analysis provides an overview of distribution patterns of two dojo loach species within the Naka-ikemi Wetland, Fukui Prefecture, Japan
inferred← citeshttps://doi.org/10.1007/s10530-024-03364-9openalex-snapshot
Rapid assessment of invasion front and biological impact of the invasive fish Coreoperca herzi using quantitative eDNA metabarcoding
inferred← citeshttps://doi.org/10.1007/s10661-024-12788-8openalex-snapshot
Exploring uncharted territory: new frontiers in environmental DNA for tropical fisheries management
inferred← citeshttps://doi.org/10.1007/s10750-018-3750-5openalex-snapshot
Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds
inferred← citeshttps://doi.org/10.1007/s11355-023-00587-1openalex-snapshot
Land use characteristics affect the sub-basinal scale urban fish community identified by environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1007/s11355-026-00738-0openalex-snapshot
Efficacy of natural marine sponges as a passive environmental DNA sampler for freshwater fish diversity monitoring
inferred← citeshttps://doi.org/10.1007/s11356-024-35025-8openalex-snapshot
Evaluating the quantitative performance of environmental DNA metabarcoding for freshwater zooplankton community: a case study in Lake Biwa, Japan
inferred← citeshttps://doi.org/10.1007/s11427-023-2493-5openalex-snapshot
Advances in environmental DNA monitoring: standardization, automation, and emerging technologies in aquatic ecosystems
inferred← citeshttps://doi.org/10.1007/s12526-024-01447-3openalex-snapshot
Investigation of fish diversity in the Xiamen Sea in spring using environmental DNA technology
inferred← citeshttps://doi.org/10.1007/s12562-018-1282-6openalex-snapshot
Dispersion and degradation of environmental DNA from caged fish in a marine environment
inferred← citeshttps://doi.org/10.1007/s12562-020-01461-xopenalex-snapshot
MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
inferred← citeshttps://doi.org/10.1016/b978-0-12-814124-3.00044-3openalex-snapshot
Environmental DNA as a conservation tool
inferred← citeshttps://doi.org/10.1016/bs.aecr.2018.09.001openalex-snapshot
Linking DNA Metabarcoding and Text Mining to Create Network-Based Biomonitoring Tools: A Case Study on Boreal Wetland Macroinvertebrate Communities
inferred← citeshttps://doi.org/10.1016/j.agee.2025.110066openalex-snapshot
Contrasting ecological communities in rice paddy fields under conventional and no-fertilizer farming practices
inferred← citeshttps://doi.org/10.1016/j.chemosphere.2024.141238openalex-snapshot
Exploitation of environmental DNA (eDNA) for ecotoxicological research: A critical review on eDNA metabarcoding in assessing marine pollution
inferred← citeshttps://doi.org/10.1016/j.ecolind.2021.107412openalex-snapshot
Effects of life stage on eDNA detection of the invasive European green crab (Carcinus maenas) in estuarine systems
inferred← citeshttps://doi.org/10.1016/j.ecolind.2021.107796openalex-snapshot
Fish environmental RNA enables precise ecological surveys with high positive predictivity
inferred← citeshttps://doi.org/10.1016/j.ecolind.2023.110044openalex-snapshot
Navigating the scales of diversity in subtropical and coastal fish assemblages ascertained by eDNA and visual surveys
inferred← citeshttps://doi.org/10.1016/j.ecolind.2023.110125openalex-snapshot
Assessing the potential use of environmental DNA for multifaceted genetic monitoring of cetaceans: Example of a wandering whale in a highly disturbed bay area
inferred← citeshttps://doi.org/10.1016/j.ecolind.2023.111019openalex-snapshot
Influence of large reservoir operation on change patterns of fish community assembly and growth adaption at low and high-water levels
inferred← citeshttps://doi.org/10.1016/j.ecolind.2024.111577openalex-snapshot
Exploring freshwater snail diversity and community structure in china's largest lake using eDNA technology
inferred← citeshttps://doi.org/10.1016/j.fishres.2021.105936openalex-snapshot
Unexpected diversity in the diet of Doryteuthis sanpaulensis (Brakoniecki, 1984) (Mollusca: Cephalopoda) from the southern Brazilian sardine fishery identified by metabarcoding
inferred← citeshttps://doi.org/10.1016/j.gecco.2025.e03963openalex-snapshot
Fish diversity and continuous sampling strategy in the lower Hanjiang River: Comparing the eDNA with the traditional methods
inferred← citeshttps://doi.org/10.1016/j.jembe.2018.09.004openalex-snapshot
Species-specific detection and quantification of environmental DNA from marine fishes in the Baltic Sea
inferred← citeshttps://doi.org/10.1016/j.jembe.2025.152150openalex-snapshot
Assessing the potential of eDNA analysis for spawning surveys in marine environments: A case study on Japanese jack mackerel
inferred← citeshttps://doi.org/10.1016/j.jenvman.2022.116310openalex-snapshot
Environmental DNA study on aquatic ecosystem monitoring and management: Recent advances and prospects
inferred← citeshttps://doi.org/10.1016/j.limno.2022.125955openalex-snapshot
Characteristics of diurnal and seasonal changes in fish detection patterns using environmental DNA metabarcoding in a mountain stream
inferred← citeshttps://doi.org/10.1016/j.marenvres.2026.108195openalex-snapshot
Seasonal variation of fish biodiversity in Xisha Islands based on dual-marker eDNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2024.117422openalex-snapshot
Environmental DNA/RNA metabarcoding for noninvasive and comprehensive monitoring and assessment of marine fishes
inferred← citeshttps://doi.org/10.1016/j.mex.2021.101238openalex-snapshot
Optimization of environmental DNA extraction and amplification methods for metabarcoding of deep-sea fish
inferred← citeshttps://doi.org/10.1016/j.mex.2025.103329openalex-snapshot
Sampling and metabarcoding of arthropod environmental DNA traces from flowers
inferred← citeshttps://doi.org/10.1016/j.rsma.2021.101950openalex-snapshot
Fish environmental DNA in Tokyo Bay: A feasibility study on the availability of environmental DNA for fisheries
inferred← citeshttps://doi.org/10.1016/j.rsma.2025.104642openalex-snapshot
Environmental DNA data provides taxa-specific insights into community differences across Reunion Island back-reef depressions
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.04.247openalex-snapshot
DNA barcode reference libraries for the monitoring of aquatic biota in Europe: Gap-analysis and recommendations for future work
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.142096openalex-snapshot
Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.142622openalex-snapshot
Methodology of fish eDNA and its applications in ecology and environment
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.157556openalex-snapshot
Applications of environmental DNA (eDNA) in agricultural systems: Current uses, limitations and future prospects
inferred← citeshttps://doi.org/10.1016/j.watbs.2022.100007openalex-snapshot
Methodology for fish biodiversity monitoring with environmental DNA metabarcoding: The primers, databases and bioinformatic pipelines
inferred← citeshttps://doi.org/10.1016/j.watres.2024.122987openalex-snapshot
Fit for purpose? Evaluating benthic invertebrate DNA metabarcoding for ecological status class assessment in streams under the Water Framework Directive
inferred← citeshttps://doi.org/10.1021/acs.est.5c08142openalex-snapshot
Environmental Filtering Weakens with Trophic Level in Urban Coastal Ecosystems
inferred← citeshttps://doi.org/10.1021/acsestwater.2c00542openalex-snapshot
Environmental Nucleic Acid Pollution: Characterization of Wastewater Generating False Positives in Molecular Ecological Surveys
inferred← citeshttps://doi.org/10.1021/acsestwater.5c00385openalex-snapshot
Comparative Evaluation of Hollow-Fiber Ultrafiltration and Syringe Microfiltration As Efficient Concentration Methods for Targeted and Comprehensive Detection of Bacterial, Viral, and Animal DNA in Water
inferred← citeshttps://doi.org/10.1038/s41598-018-22817-5openalex-snapshot
Demonstration of the potential of environmental DNA as a tool for the detection of avian species
inferred← citeshttps://doi.org/10.1038/s41598-019-50571-9openalex-snapshot
Combining ddPCR and environmental DNA to improve detection capabilities of a critically endangered freshwater invertebrate
inferred← citeshttps://doi.org/10.1038/s41598-020-73648-2openalex-snapshot
Comparing fish prey diversity for a critically endangered aquatic mammal in a reserve and the wild using eDNA metabarcoding
inferred← citeshttps://doi.org/10.1038/s41598-021-98926-5openalex-snapshot
Quantitative assessment of multiple fish species around artificial reefs combining environmental DNA metabarcoding and acoustic survey
inferred← citeshttps://doi.org/10.1038/s41598-022-15488-wopenalex-snapshot
eDNA metabarcoding as a promising conservation tool to monitor fish diversity in Beijing water systems compared with ground cages
inferred← citeshttps://doi.org/10.1038/s41598-022-25274-3openalex-snapshot
Quantitative environmental DNA metabarcoding shows high potential as a novel approach to quantitatively assess fish community
inferred← citeshttps://doi.org/10.1038/s41598-026-52959-wopenalex-snapshot
Large-scale marine eDNA database reveals seasonal latitudinal diversity gradients in Japan driven by vagrant fish
inferred← citeshttps://doi.org/10.1039/d4ew00535jopenalex-snapshot
Potential of a mammalian and avian environmental DNA metabarcoding assay as a tool for fecal pollution source tracking in river waters
inferred← citeshttps://doi.org/10.1093/bbb/zbae173openalex-snapshot
Challenge of validation in whole-cell spike-in amplicon sequencing to comprehensively quantify food lactic acid bacteriota
inferred← citeshttps://doi.org/10.1093/dnares/dsac018openalex-snapshot
Environmental DNA analysis for macro-organisms: species distribution and more
inferred← citeshttps://doi.org/10.1093/gigascience/giac065openalex-snapshot
Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods
inferred← citeshttps://doi.org/10.1093/icesjms/fsaa115openalex-snapshot
From DNA to biomass: opportunities and challenges in species quantification of bulk fisheries products
inferred← citeshttps://doi.org/10.1093/icesjms/fsab273openalex-snapshot
Current laboratory protocols for detecting fish species with environmental DNA optimize sensitivity and reproducibility, especially for more abundant populations
inferred← citeshttps://doi.org/10.1093/ismeco/ycae007openalex-snapshot
Deterministic and stochastic processes generating alternative states of microbiomes
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0001openalex-snapshot
Introduction to environmental DNA (eDNA)
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0002openalex-snapshot
DNA metabarcode choice and design
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0003openalex-snapshot
Reference databases
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0006openalex-snapshot
DNA amplification and multiplexing
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0008openalex-snapshot
DNA metabarcoding data analysis
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0009openalex-snapshot
Single-species detection
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0010openalex-snapshot
Environmental DNA for functional diversity
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0011openalex-snapshot
Some early landmark studies
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0012openalex-snapshot
Freshwater ecosystems
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0013openalex-snapshot
Marine environments
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0014openalex-snapshot
Terrestrial ecosystems
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0016openalex-snapshot
Host-associated microbiota
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0018openalex-snapshot
Analysis of bulk samples
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0019openalex-snapshot
The future of eDNA metabarcoding
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.005.0001openalex-snapshot
Examples of primer pairs available for DNA metabarcoding
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.005.0002openalex-snapshot
Three-hundred and eighty-four (384) tags of eight nucleotides, with at least three differences among them
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.005.0003openalex-snapshot
Checklist when designing a PCR-based DNA metabarcoding experiment
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlac014openalex-snapshot
Elasmobranch diversity across a remote coral reef atoll revealed through environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1098/rsos.231795openalex-snapshot
Local-manifold-distance-based regression: an estimation method for quantifying dynamic biological interactions with empirical time series
inferred← citeshttps://doi.org/10.1098/rspb.2021.2690openalex-snapshot
Interaction capacity as a potential driver of community diversity
inferred← citeshttps://doi.org/10.1101/2020.10.30.361980openalex-snapshot
Environmental DNA degradation simulation from water temperature and DNA fragment length: A meta-analysis approach
inferred← citeshttps://doi.org/10.1101/2022.06.02.494625openalex-snapshot
Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities
inferred← citeshttps://doi.org/10.1101/2022.07.29.502053openalex-snapshot
12S Gene Metabarcoding with DNA Standard Quantifies Marine Bony Fish Environmental DNA, Identifies Threshold for Reproducible Amplification, and Overcomes Distortion Due to Non-Fish Vertebrate DNA
inferred← citeshttps://doi.org/10.1101/2022.08.23.505041openalex-snapshot
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics
inferred← citeshttps://doi.org/10.1101/2022.09.11.507499openalex-snapshot
Core species and interactions prominent in fish-associated microbiome dynamics
inferred← citeshttps://doi.org/10.1101/2023.02.19.529115openalex-snapshot
Detecting and validating influential organisms for rice growth: An ecological network approach
inferred← citeshttps://doi.org/10.1101/2023.04.24.538206openalex-snapshot
Large scale eDNA database reveals latitudinal diversity gradients with seasonal variations
inferred← citeshttps://doi.org/10.1101/2023.10.03.560640openalex-snapshot
Towards quantitative DNA Metabarcoding: A method to overcome PCR amplification bias
inferred← citeshttps://doi.org/10.1101/2025.03.19.644246openalex-snapshot
µCeta: a set of cetacean-specific primers for environmental DNA metabarcoding with minimal amplification of non-target vertebrates
inferred← citeshttps://doi.org/10.1101/435305openalex-snapshot
Use of a filter cartridge combined with intra-cartridge bead beating improves detection of microbial DNA from water samples
inferred← citeshttps://doi.org/10.1101/661447openalex-snapshot
Improving detection capabilities of a critically endangered freshwater invertebrate with environmental DNA using digital droplet PCR
inferred← citeshttps://doi.org/10.1111/1749-4877.12832openalex-snapshot
Validation and development of eDNA metabarcoding primers for comprehensive assessment of Chinese amphibians
inferred← citeshttps://doi.org/10.1111/1755-0998.12929openalex-snapshot
Measuring global fish species richness with eDNA metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.12982openalex-snapshot
Environmental DNA (eDNA) metabarcoding reveals strong discrimination among diverse marine habitats connected by water movement
inferred← citeshttps://doi.org/10.1111/1755-0998.13165openalex-snapshot
Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population
inferred← citeshttps://doi.org/10.1111/1755-0998.13200openalex-snapshot
Quantitative evaluation of intraspecific genetic diversity in a natural fish population using environmental DNA analysis
inferred← citeshttps://doi.org/10.1111/1755-0998.13568openalex-snapshot
Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects
inferred← citeshttps://doi.org/10.1111/1755-0998.13703openalex-snapshot
Extracting abundance information from DNA ‐based data
inferred← citeshttps://doi.org/10.1111/1755-0998.13715openalex-snapshot
Quantitative monitoring of diverse fish communities on a large scale combining eDNA metabarcoding and qPCR
inferred← citeshttps://doi.org/10.1111/1755-0998.13772openalex-snapshot
Environmental DNA phylogeography: Successful reconstruction of phylogeographic patterns of multiple fish species from cups of water
inferred← citeshttps://doi.org/10.1111/1755-0998.13875openalex-snapshot
Monitoring of multiple fish species by quantitative environmental DNA metabarcoding surveys over two summer seasons
inferred← citeshttps://doi.org/10.1111/1755-0998.14119openalex-snapshot
Observation Bias in Metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.70205openalex-snapshot
Substrate‐Dependent Variation in Environmental DNA Persistence and Degradation From a Small Mammal
inferred← citeshttps://doi.org/10.1111/2041-210x.13204openalex-snapshot
Use of a filter cartridge combined with intra‐cartridge bead‐beating improves detection of microbial DNA from water samples
inferred← citeshttps://doi.org/10.1111/2041-210x.13276openalex-snapshot
Non‐specific amplification compromises environmental DNA metabarcoding with COI
inferred← citeshttps://doi.org/10.1111/2041-210x.14317openalex-snapshot
eDITH : An R‐package to spatially project eDNA ‐based biodiversity across river networks with minimal prior information
inferred← citeshttps://doi.org/10.1111/ele.13672openalex-snapshot
Are networks of trophic interactions sufficient for understanding the dynamics of multi‐trophic communities? Analysis of a tri‐trophic insect food‐web time‐series
inferred← citeshttps://doi.org/10.1111/ele.70388openalex-snapshot
Stochastic Forces in Microbial Community Assembly: Founding Community Size Governs Divergent Ecological Trajectories
inferred← citeshttps://doi.org/10.1111/fog.12668openalex-snapshot
Dietary metabarcoding of keystone sardine species reveals the importance of their ichthyoplankton prey in food webs of the Southern Brazilian Bight fisheries
inferred← citeshttps://doi.org/10.1111/fwb.13779openalex-snapshot
The value of quantitative environmental DNA analyses for the management of invasive and endangered native fish
inferred← citeshttps://doi.org/10.1111/mec.14886openalex-snapshot
DNA metabarcoding unveils multiscale trophic variation in a widespread coastal opportunist
inferred← citeshttps://doi.org/10.1111/mec.15530openalex-snapshot
Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modelling
inferred← citeshttps://doi.org/10.1111/mec.16659openalex-snapshot
Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward
inferred← citeshttps://doi.org/10.1111/mec.16881openalex-snapshot
Towards exhaustive community ecology via DNA metabarcoding
inferred← citeshttps://doi.org/10.1111/mec.70479openalex-snapshot
Spatial Complexity and Rare‐Taxon Turnover Structures Benthic Coral Reef eDNA Communities
inferred← citeshttps://doi.org/10.1139/cjfas-2023-0053openalex-snapshot
Contrasting strengths of eDNA and electrofishing compared to historic records for assessing fish community diversity and composition
inferred← citeshttps://doi.org/10.1163/15685381-20191194openalex-snapshot
Environmental DNA and metabarcoding for the study of amphibians and reptiles: species distribution, the microbiome, and much more
inferred← citeshttps://doi.org/10.1186/s12862-021-01895-6openalex-snapshot
Seeing through sedimented waters: environmental DNA reduces the phantom diversity of sharks and rays in turbid marine habitats
inferred← citeshttps://doi.org/10.1186/s40168-023-01474-5openalex-snapshot
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics
inferred← citeshttps://doi.org/10.1186/s40168-023-01498-xopenalex-snapshot
Core species and interactions prominent in fish-associated microbiome dynamics
inferred← citeshttps://doi.org/10.1201/9781003363873-7openalex-snapshot
Advancing and Integrating ‘Biomonitoring 2.0' with New Molecular Tools for Marine Biodiversity and Ecosystem Assessments
inferred← citeshttps://doi.org/10.1371/journal.pone.0231718openalex-snapshot
Comparing the efficiency of open and enclosed filtration systems in environmental DNA quantification for fish and jellyfish
inferred← citeshttps://doi.org/10.1371/journal.pone.0246222openalex-snapshot
Temperature increase drives critical slowing down of fish ecosystems
inferred← citeshttps://doi.org/10.1371/journal.pone.0260903openalex-snapshot
A comparison of biomonitoring methodologies for surf zone fish communities
inferred← citeshttps://doi.org/10.1371/journal.pone.0266720openalex-snapshot
Comparing eDNA metabarcoding primers for assessing fish communities in a biodiverse estuary
inferred← citeshttps://doi.org/10.1371/journal.pone.0267021openalex-snapshot
Establishing and using a genetic database for resolving identification of fish species in the Sea of Galilee, Israel
inferred← citeshttps://doi.org/10.1371/journal.pone.0272660openalex-snapshot
Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes
inferred← citeshttps://doi.org/10.1371/journal.pone.0328280openalex-snapshot
Seasonal changes in the structure of river fish communities in temperate Japan depicted using quantitative eDNA metabarcoding
inferred← citeshttps://doi.org/10.18307/2021.0425openalex-snapshot
Universal primers screening and verification for environmental DNA metabarcoding of freshwater mussels in the Lake Poyang Basin
inferred← citeshttps://doi.org/10.21203/rs.3.rs-7872521/v1openalex-snapshot
Large scale eDNA database reveals potential for pseudo biodiversity
inferred← citeshttps://doi.org/10.2208/jscejer.78.7_iii_401openalex-snapshot
DISTRIBUTION OF ENVIRONMENTAL DNA IN RIVER CROSS SECTION AND DECOMPOSITION RATE DURING FLOWING-DOWN
inferred← citeshttps://doi.org/10.2208/jscejhe.76.2_i_1303openalex-snapshot
ASSESSMENT ON THE SEASONAL BIOMASS VARIATIONS OF RIVERINE ORGANISMS USING ENVIRONMENTAL DNA ANALYSIS IN THE TAKATSU RIVER, WESTERN JAPAN
inferred← citeshttps://doi.org/10.2208/jscejhe.77.2_i_541openalex-snapshot
ASSESSMENT OF DIURNAL VARIATIONS OF RIVERINE FISH COMMUNITY USING THE QUANTITATIVE METHOD OF ENVIRONMENTAL DNA METABARCODING
inferred← citeshttps://doi.org/10.2208/jscejhe.77.2_i_547openalex-snapshot
EXAMINING ENVIRONMENTAL FACTORS AFFECTING FISH ASSEMBLAGE PATTERNS IN THE TRIBUTARIES USING QUANTITATIVE EDNA METABARCODING
inferred← citeshttps://doi.org/10.2208/jscejhe.77.2_i_979openalex-snapshot
EFFECTS OF SEDIMENT REPLENISHMENT ON THE RIVERINE ENVIRONMENT IN THE DOWNSTREAM REACHES OF THE HAMAHARA DAM, GONOKAWA RIVER, WESTERN JAPAN
inferred← citeshttps://doi.org/10.2208/jscejhe.78.2_i_835openalex-snapshot
USE OF QUANTITATIVE ENVIRONMENTAL DNA METABARCODING FOR BASIN-WIDE FISH BIODIVERSITY EVALUATION
inferred← citeshttps://doi.org/10.2208/jscejj.23-16102openalex-snapshot
FUNDAMENTAL STUDY OF RIVER BIOTIC INTEGRITY EVALUATION USING QUANTITATIVE ENVIRONMENTAL METABARCODING
inferred← citeshttps://doi.org/10.2208/jscejj.23-16103openalex-snapshot
DEVELOPMENT OF BASIN-WIDE FISH DIVERSITY POTENTIAL MAP BASED ON ENVIRONMENTAL DNA
inferred← citeshttps://doi.org/10.2208/jscejj.24-16122openalex-snapshot
BASIN-WIDE RIVER ENVIRONMENTAL EVALUATION BASED ON ENVIRONMENTAL DNA AND STABLE ISOTOPE
inferred← citeshttps://doi.org/10.2208/jscejj.24-16123openalex-snapshot
ESTIMATION OF BASIN-WIDE FISH HABITAT POTENTIAL USING ENVIRONMENTAL DNA
inferred← citeshttps://doi.org/10.2208/jscejj.25-16179openalex-snapshot
EXAMINATION OF SEASONAL ABUNDACE PATTERNS OF AYU BASED ON ENVIRONMENTAL DNA CONCENTRATIONS AND ENVIRONMENTAL DNA FLUXES
inferred← citeshttps://doi.org/10.22146/jfs.73037openalex-snapshot
Reef Fish Species Diversity Using Environmental DNA Metabarcoding in Mansinam and Lemon Island Waters, Manokwari Regency
inferred← citeshttps://doi.org/10.22541/au.163490255.53353112/v1openalex-snapshot
Estimation accuracy of species abundance based on environmental DNA with relation to its production source, state, and assay methodology suggested by meta-analyses
inferred← citeshttps://doi.org/10.3354/meps14631openalex-snapshot
Fine-scale spatial distribution of a fish community in artificial reefs investigated using an underwater drone and environmental DNA analysis
inferred← citeshttps://doi.org/10.3389/fevo.2020.00276openalex-snapshot
Calibrating Environmental DNA Metabarcoding to Conventional Surveys for Measuring Fish Species Richness
inferred← citeshttps://doi.org/10.3389/fevo.2021.623831openalex-snapshot
A Model and Simulation of the Influence of Temperature and Amplicon Length on Environmental DNA Degradation Rates: A Meta-Analysis Approach
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