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C. elegans exhibits coordinated oscillation in gene activation in single-cell developmental data

https://doi.org/10.1101/114074
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1521-1878(200001)22:1<72::aid-bies12>3.0.co;2-sopenalex-snapshot
A clock-work somite
inferredcites →https://doi.org/10.1016/j.cell.2009.08.044openalex-snapshot
Analysis of Cell Fate from Single-Cell Gene Expression Profiles in C. elegans
inferredcites →https://doi.org/10.1016/j.cell.2014.04.005openalex-snapshot
Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development
inferredcites →https://doi.org/10.1016/j.molcel.2013.12.013openalex-snapshot
Extensive Oscillatory Gene Expression during C. elegans Larval Development
inferredcites →https://doi.org/10.1016/j.ydbio.2009.01.044openalex-snapshot
The C. elegans Hox gene egl-5 is required for correct development of the hermaphrodite hindgut and for the response to rectal infection by Microbacterium nematophilum
inferredcites →https://doi.org/10.1016/j.ydbio.2012.11.034openalex-snapshot
A quantitative model of normal Caenorhabditis elegans embryogenesis and its disruption after stress
inferredcites →https://doi.org/10.1016/j.ydbio.2016.03.002openalex-snapshot
The Paired-box protein PAX-3 regulates the choice between lateral and ventral epidermal cell fates in C. elegans
inferredcites →https://doi.org/10.1016/s0092-8674(00)80451-1openalex-snapshot
Avian hairy Gene Expression Identifies a Molecular Clock Linked to Vertebrate Segmentation and Somitogenesis
inferredcites →https://doi.org/10.1038/254196a0openalex-snapshot
Control of somite number during morphogenesis of a vertebrate, Xenopus laevis
inferredcites →https://doi.org/10.1038/35002607openalex-snapshot
The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/nature13173openalex-snapshot
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
inferredcites →https://doi.org/10.1038/nature13497openalex-snapshot
Regulatory analysis of the C. elegans genome with spatiotemporal resolution
inferredcites →https://doi.org/10.1038/nbt.2859openalex-snapshot
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
inferredcites →https://doi.org/10.1038/ng.2763openalex-snapshot
Dampening of expression oscillations by synchronous regulation of a microRNA and its target
inferredcites →https://doi.org/10.1038/nmeth.1228openalex-snapshot
Automated analysis of embryonic gene expression with cellular resolution in C. elegans
inferredcites →https://doi.org/10.1038/nprot.2006.222openalex-snapshot
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
inferredcites →https://doi.org/10.1038/nsmb.2660openalex-snapshot
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
inferredcites →https://doi.org/10.1073/pnas.0511111103openalex-snapshot
Automated cell lineage tracing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1073/pnas.1414856111openalex-snapshot
Caenorhabditis elegans period homolog lin-42 regulates the timing of heterochronic miRNA expression
inferredcites →https://doi.org/10.1073/pnas.97.9.4499openalex-snapshot
Caenorhabditis elegans embryonic axial patterning requires two recently discovered posterior-group Hox genes
inferredcites →https://doi.org/10.1074/jbc.m113.487975openalex-snapshot
Collaborative Regulation of Development but Independent Control of Metabolism by Two Epidermis-specific Transcription Factors in Caenorhabditis elegans
inferredcites →https://doi.org/10.1101/289223openalex-snapshot
Neural Data Visualization for Scalable and Generalizable Single Cell Analysis
inferredcites →https://doi.org/10.1101/gad.12.24.3809openalex-snapshot
Reprogramming of early embryonic blastomeres into endodermal progenitors by a Caenorhabditis elegans GATA factor
inferredcites →https://doi.org/10.1101/gr.131920.111openalex-snapshot
Multidimensional regulation of gene expression in the C. elegans embryo
inferredcites →https://doi.org/10.1111/j.1356-9597.2004.00725.xopenalex-snapshot
Caenorhabditis elegans T‐box genes tbx‐9 and tbx‐8 are required for formation of hypodermis and body‐wall muscle in embryogenesis
inferredcites →https://doi.org/10.1111/j.1432-0436.1982.tb01243.xopenalex-snapshot
Timing Mechanisms in Early Embryonic Development
inferredcites →https://doi.org/10.1126/science.aam8940openalex-snapshot
Comprehensive single-cell transcriptional profiling of a multicellular organism
inferredcites →https://doi.org/10.1126/science.aar3131openalex-snapshot
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
inferredcites →https://doi.org/10.1126/science.aar4362openalex-snapshot
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo
inferredcites →https://doi.org/10.1126/science.aar5780openalex-snapshot
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
inferredcites →https://doi.org/10.1128/mcb.24.17.7345-7358.2004openalex-snapshot
The Caenorhabditis elegans Nuclear Receptor Gene nhr-25 Regulates Epidermal Cell Development
inferredcites →https://doi.org/10.1146/annurev-cellbio-100913-013027openalex-snapshot
Zygotic Genome Activation During the Maternal-to-Zygotic Transition
inferredcites →https://doi.org/10.1182/blood.v120.21.1044.1044openalex-snapshot
Single Cell Trajectory Detection Orders Hallmarks of Early Human B Cell Development
inferredcites →https://doi.org/10.1186/1471-2105-7-275openalex-snapshot
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
inferredcites →https://doi.org/10.1242/dev.086256openalex-snapshot
Quantitative semi-automated analysis of morphogenesis with single-cell resolution in complex embryos
inferredcites →https://doi.org/10.1242/dev.086454openalex-snapshot
Developmental fate and lineage commitment of singled mouse blastomeres
inferredcites →https://doi.org/10.1242/dev.096040openalex-snapshot
Systematic quantification of developmental phenotypes at single-cell resolution during embryogenesis
inferredcites →https://doi.org/10.1242/dev.098012openalex-snapshot
Gene transcription is coordinated with, but not dependent on, cell divisions during C. elegans embryonic fate specification
inferredcites →https://doi.org/10.1242/dev.105288openalex-snapshot
BLIND ordering of large-scale transcriptomic developmental timecourses
inferredcites →https://doi.org/10.1242/dev.127.13.2863openalex-snapshot
Progressive restriction in fate potential by neural progenitors during cerebral cortical development
inferredcites →https://doi.org/10.1371/journal.pgen.1001089openalex-snapshot
A Negative Regulatory Loop between MicroRNA and Hox Gene Controls Posterior Identities in Caenorhabditis elegans
inferredcites →https://doi.org/10.1371/journal.pone.0106309openalex-snapshot
Uncoupling Different Characteristics of the C. elegans E Lineage from Differentiation of Intestinal Markers
inferredcites →https://doi.org/10.1371/journal.pone.0126947openalex-snapshot
The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio-Temporal Expression Dynamics during Embryogenesis
inferredcites →https://doi.org/10.1534/genetics.105.044909openalex-snapshot
Reevaluation of the Role of the med-1 and med-2 Genes in Specifying the Caenorhabditis elegans Endoderm
inferredcites →https://doi.org/10.4018/978-1-60566-766-9.ch002openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.cels.2018.05.017openalex-snapshot
Generalizable and Scalable Visualization of Single-Cell Data Using Neural Networks
inferred← citeshttps://doi.org/10.1101/289223openalex-snapshot
Neural Data Visualization for Scalable and Generalizable Single Cell Analysis
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