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The Homeobox Genes of Caenorhabditis elegans and Insights into Their Spatio-Temporal Expression Dynamics during Embryogenesis

https://doi.org/10.1371/journal.pone.0126947
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The Caenorhabditis elegans Distal‐less ortholog ceh‐43 is required for development of the anterior hypodermis
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Assessing Normal Embryogenesis inCaenorhabditis elegansUsing a 4D Microscope: Variability of Development and Regional Specification
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Genetic Requirements for PIE-1 Localization and Inhibition of Gene Expression in the Embryonic Germ Lineage ofCaenorhabditis elegans
inferredcites →https://doi.org/10.1006/dbio.2001.0325openalex-snapshot
The Caenorhabditis elegans Six/sine oculis Class Homeobox Gene ceh-32 Is Required for Head Morphogenesis
inferredcites →https://doi.org/10.1006/dbio.2001.0544openalex-snapshot
Conserved Regulation of the Caenorhabditis elegans labial/Hox1 Gene ceh-13
inferredcites →https://doi.org/10.1007/978-90-481-9069-0_5openalex-snapshot
Homeodomain Subtypes and Functional Diversity
inferredcites →https://doi.org/10.1007/s00239-006-0023-0openalex-snapshot
Comprehensive Analysis of Animal TALE Homeobox Genes: New Conserved Motifs and Cases of Accelerated Evolution
inferredcites →https://doi.org/10.1007/s004270050227openalex-snapshot
A Caenorhabditis elegans homeobox gene expressed in the male tail, a link between pattern formation and sexual dimorphism?
inferredcites →https://doi.org/10.1016/0006-291x(92)91878-topenalex-snapshot
Cloning of the Drosophila prospero gene and its expression in ganglion mother cells
inferredcites →https://doi.org/10.1016/0012-1606(77)90158-0openalex-snapshot
Post-embryonic cell lineages of the nematode, Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/0012-1606(83)90201-4openalex-snapshot
The embryonic cell lineage of the nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/0012-1606(92)90050-qopenalex-snapshot
The zfh-2 gene product is a potential regulator of neuron-specific DOPA decarboxylase gene expression in Drosophila
inferredcites →https://doi.org/10.1016/0092-8674(91)90367-8openalex-snapshot
prospero is expressed in neuronal precursors and encodes a nuclear protein that is involved in the control of axonal outgrowth in Drosophila
inferredcites →https://doi.org/10.1016/0092-8674(91)90463-9openalex-snapshot
The prospero gene specifies cell fates in the drosophila central nervous system
inferredcites →https://doi.org/10.1016/0092-8674(92)90632-mopenalex-snapshot
Gastrulation in the mouse: The role of the homeobox gene goosecoid
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WWW-query: An on-line retrieval system for biological sequence banks
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Combinatorial Marking of Cells and Organelles with Reconstituted Fluorescent Proteins
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The Caenorhabditis elegans aryl hydrocarbon receptor, AHR-1, regulates neuronal development
inferredcites →https://doi.org/10.1016/j.ydbio.2004.05.010openalex-snapshot
UNC-39, the C. elegans homolog of the human myotonic dystrophy-associated homeodomain protein Six5, regulates cell motility and differentiation
inferredcites →https://doi.org/10.1016/j.ydbio.2006.04.001openalex-snapshot
The T-box factor TBX-2 and the SUMO conjugating enzyme UBC-9 are required for ABa-derived pharyngeal muscle in C. elegans
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Comparative analysis of embryonic cell lineage between Caenorhabditis briggsae and Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/j.ydbio.2009.06.014openalex-snapshot
Spatio-temporal reference model of Caenorhabditis elegans embryogenesis with cell contact maps
inferredcites →https://doi.org/10.1016/j.ydbio.2011.06.028openalex-snapshot
Transcriptional profiling of C. elegans DAF-19 uncovers a ciliary base-associated protein and a CDK/CCRK/LF2p-related kinase required for intraflagellar transport
inferredcites →https://doi.org/10.1016/j.ydbio.2013.04.009openalex-snapshot
The LIM homeobox gene ceh-14 is required for phasmid function and neurite outgrowth
inferredcites →https://doi.org/10.1016/s0070-2153(09)88003-4openalex-snapshot
Chapter 3 Hox Specificity
inferredcites →https://doi.org/10.1016/s0092-8674(00)81340-9openalex-snapshot
Spatial and Temporal Controls Target pal-1 Blastomere-Specification Activity to a Single Blastomere Lineage in C. elegans Embryos
inferredcites →https://doi.org/10.1016/s0167-7799(97)01169-4openalex-snapshot
Four-dimensional imaging: the exploration of space and time
inferredcites →https://doi.org/10.1016/s0168-9525(99)01731-xopenalex-snapshot
Pax genes in Caenorhabditis elegans: a new twist
inferredcites →https://doi.org/10.1016/s0378-1119(98)00137-1openalex-snapshot
Rapid expression screening of Caenorhabditis elegans homeobox open reading frames using a two-step polymerase chain reaction promoter-gfp reporter construction technique
inferredcites →https://doi.org/10.1016/s0736-5748(01)00003-xopenalex-snapshot
Otx genes in the development and evolution of the vertebrate brain
inferredcites →https://doi.org/10.1016/s0896-6273(00)81062-4openalex-snapshot
The LIM Homeobox Gene ceh-14 Confers Thermosensory Function to the AFD Neurons in Caenorhabditis elegans
inferredcites →https://doi.org/10.1016/s0896-6273(01)00431-7openalex-snapshot
Specification of Thermosensory Neuron Fate in C. elegans Requires ttx-1, a Homolog of otd/Otx
inferredcites →https://doi.org/10.1016/s0925-4773(01)00585-8openalex-snapshot
Vsx1, a rapidly evolving paired-like homeobox gene expressed in cone bipolar cells
inferredcites →https://doi.org/10.1016/s0925-4773(03)00117-5openalex-snapshot
Gene expression markers for Caenorhabditis elegans vulval cells
inferredcites →https://doi.org/10.1016/s0959-437x(98)80113-5openalex-snapshot
Hox proteins meet more partners
inferredcites →https://doi.org/10.1016/s1534-5807(03)00293-4openalex-snapshot
Otx/otd Homeobox Genes Specify Distinct Sensory Neuron Identities in C. elegans
inferredcites →https://doi.org/10.1038/341239a0openalex-snapshot
Caenorhabditis elegans has scores of homoeobox-containing genes
inferredcites →https://doi.org/10.1038/ncb2662openalex-snapshot
A pathway for unicellular tube extension depending on the lymphatic vessel determinant Prox1 and on osmoregulation
inferredcites →https://doi.org/10.1038/nmeth.2478openalex-snapshot
Endrov: an integrated platform for image analysis
inferredcites →https://doi.org/10.1038/nprot.2006.222openalex-snapshot
The lineaging of fluorescently-labeled Caenorhabditis elegans embryos with StarryNite and AceTree
inferredcites →https://doi.org/10.1046/j.1365-2818.2000.00741.xopenalex-snapshot
A two‐channel four‐dimensional image recording and viewing system with automatic drift correction
inferredcites →https://doi.org/10.1073/pnas.0406882102openalex-snapshot
The THAP domain of THAP1 is a large C2CH module with zinc-dependent sequence-specific DNA-binding activity
inferredcites →https://doi.org/10.1073/pnas.0511111103openalex-snapshot
Automated cell lineage tracing in Caenorhabditis elegans
inferredcites →https://doi.org/10.1086/416571openalex-snapshot
PHYLIP: Phylogeny Inference Package. Version 3.2. Joel Felsenstein
inferredcites →https://doi.org/10.1091/mbc.12.6.1751openalex-snapshot
Spindle Dynamics and the Role of γ-Tubulin in Early Caenorhabditis elegans Embryos
inferredcites →https://doi.org/10.1091/mbc.e02-10-0677openalex-snapshot
XBX-1 Encodes a Dynein Light Intermediate Chain Required for Retrograde Intraflagellar Transport and Cilia Assembly inCaenorhabditis elegans
inferredcites →https://doi.org/10.1093/bioinformatics/bti761openalex-snapshot
LogoBar: bar graph visualization of protein logos with gaps
inferredcites →https://doi.org/10.1093/emboj/19.14.3694openalex-snapshot
Protein interaction surface of the POU transcription factor UNC‐86 selectively used in touch neurons
inferredcites →https://doi.org/10.1093/icb/icj012openalex-snapshot
What a couple of dimensions can do for you: Comparative developmental studies using 4D microscopy--examples from tardigrade development
inferredcites →https://doi.org/10.1093/ije/dyh299openalex-snapshot
Regression to the mean: what it is and how to deal with it
inferredcites →https://doi.org/10.1093/molbev/msp201openalex-snapshot
A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes
inferredcites →https://doi.org/10.1093/nar/25.21.4173openalex-snapshot
Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals
inferredcites →https://doi.org/10.1093/nar/gkp018openalex-snapshot
Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development
inferredcites →https://doi.org/10.1093/nar/gkr367openalex-snapshot
HMMER web server: interactive sequence similarity searching
inferredcites →https://doi.org/10.1093/nar/gks1193openalex-snapshot
NCBI GEO: archive for functional genomics data sets—update
inferredcites →https://doi.org/10.1101/gad.1607807openalex-snapshot
Control of sex-specific apoptosis in C. elegans by the BarH homeodomain protein CEH-30 and the transcriptional repressor UNC-37/Groucho
inferredcites →https://doi.org/10.1101/gr.093815.109openalex-snapshot
Comparison of diverse developmental transcriptomes reveals that coexpression of gene neighbors is not evolutionarily conserved
inferredcites →https://doi.org/10.1101/gr.131920.111openalex-snapshot
Multidimensional regulation of gene expression in the C. elegans embryo
inferredcites →https://doi.org/10.1101/sqb.2003.68.159openalex-snapshot
Gene Expression Profiling of Cells, Tissues, and Developmental Stages of the Nematode C. elegans
inferredcites →https://doi.org/10.1111/j.1365-2818.1993.tb03313.xopenalex-snapshot
Measurement of co‐localization of objects in dual‐colour confocal images
inferredcites →https://doi.org/10.1126/science.273.5275.603openalex-snapshot
Four-Dimensional Imaging: Computer Visualization of 3D Movements in Living Specimens
inferredcites →https://doi.org/10.1126/science.282.5396.2033openalex-snapshot
The Taxonomy of Developmental Control in Caenorhabditis elegans
inferredcites →https://doi.org/10.1126/science.8303295openalex-snapshot
Green Fluorescent Protein as a Marker for Gene Expression
inferredcites →https://doi.org/10.1186/1471-2105-6-125openalex-snapshot
Detection of nuclei in 4D Nomarski DIC microscope images of early Caenorhabditis elegans embryos using local image entropy and object tracking
inferredcites →https://doi.org/10.1186/1471-2105-7-275openalex-snapshot
AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
inferredcites →https://doi.org/10.1186/1471-2148-10-364openalex-snapshot
A family history of DUX4: phylogenetic analysis of DUXA, B, C and Duxbl reveals the ancestral DUX gene
inferredcites →https://doi.org/10.1186/1471-2164-8-27openalex-snapshot
Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns
inferredcites →https://doi.org/10.1186/1471-2164-9-127openalex-snapshot
Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif
inferredcites →https://doi.org/10.1186/1741-7007-5-47openalex-snapshot
Classification and nomenclature of all human homeobox genes
inferredcites →https://doi.org/10.1186/2041-9139-2-18openalex-snapshot
Evolution of embryonic development in nematodes
inferredcites →https://doi.org/10.1186/gb-2003-4-2-r12openalex-snapshot
Genesis and evolution of the Evx and Moxgenes and the extended Hox and ParaHox gene clusters
inferredcites →https://doi.org/10.1186/gb-2005-6-13-r110openalex-snapshot
A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks
inferredcites →https://doi.org/10.1242/dev.001065openalex-snapshot
The rise and fall of Hox gene clusters
inferredcites →https://doi.org/10.1242/dev.00122openalex-snapshot
The divergentC. elegansephrin EFN-4 functions inembryonic morphogenesis in a pathway independent of the VAB-1 Eph receptor
inferredcites →https://doi.org/10.1242/dev.00300openalex-snapshot
The actin-binding protein UNC-115 is an effector of Rac signaling during axon pathfinding in C. elegans
inferredcites →https://doi.org/10.1242/dev.00302openalex-snapshot
Composition and dynamics of the Caenorhabditis elegans early embryonic transcriptome
inferredcites →https://doi.org/10.1242/dev.00551openalex-snapshot
TheCaenorhabditis elegansems class homeobox gene ceh-2 is required for M3 pharynx motoneuron function
inferredcites →https://doi.org/10.1242/dev.00678openalex-snapshot
Distinct roles of transcription factors EGL-46 and DAF-19 in specifying the functionality of a polycystin-expressing sensory neuron necessary forC. elegansmale vulva location behavior
inferredcites →https://doi.org/10.1242/dev.00735openalex-snapshot
C. elegans PAR-3 and PAR-6 are required for apicobasal asymmetries associated with cell adhesion and gastrulation
inferredcites →https://doi.org/10.1242/dev.058834openalex-snapshot
Otx-dependent expression of proneural bHLH genes establishes a neuronal bilateral asymmetry inC. elegans
inferredcites →https://doi.org/10.1242/dev.068148openalex-snapshot
Notch and Ras promote sequential steps of excretory tube development inC. elegans
inferredcites →https://doi.org/10.1242/dev.113.supplement_2.79openalex-snapshot
The prospero gene encodes a divergent homeodomain protein that controls neuronal identity in Drosophila
inferredcites →https://doi.org/10.1242/dev.120.8.2175openalex-snapshot
The Caenorhabditis elegans NK-2 class homeoprotein CEH-22 is involved in combinatorial activation of gene expression in pharyngeal muscle
inferredcites →https://doi.org/10.1242/dev.121.5.1253openalex-snapshot
The C. elegans neuronally expressed homeobox gene ceh-10 is closely related to genes expressed in the vertebrate eye
inferredcites →https://doi.org/10.1242/dev.122.5.1641openalex-snapshot
A functional homologue of goosecoid in Drosophila
inferredcites →https://doi.org/10.1242/dev.124.21.4193openalex-snapshot
The expression of the C. elegans labial-like Hox gene ceh-13 during early embryogenesis relies on cell fate and on anteroposterior cell polarity
inferredcites →https://doi.org/10.1242/dev.124.8.1443openalex-snapshot
Segregating expression domains of two goosecoid genes during the transition from gastrulation to neurulation in chick embryos
inferredcites →https://doi.org/10.1242/dev.126.7.1537openalex-snapshot
Anterior organization of theCaenorhabditis elegansembryo by thelabial-likeHoxgeneceh-13
inferredcites →https://doi.org/10.1242/dev.127.23.5179openalex-snapshot
Overlapping roles of two Hox genes and theexdorthologceh-20in diversification of theC. eleganspostembryonic mesoderm
inferredcites →https://doi.org/10.1242/dev.128.5.779openalex-snapshot
Regulation of ectodermal and excretory function by the C. elegans POU homeobox gene ceh-6
inferredcites →https://doi.org/10.1242/dev.129.22.5255openalex-snapshot
Roles of the Homothorax/Meis/Prep homolog UNC-62 and the Exd/Pbx homologs CEH-20 and CEH-40 inC. elegansembryogenesis
inferredcites →https://doi.org/10.1371/journal.pbio.0000045openalex-snapshot
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
inferredcites →https://doi.org/10.1371/journal.pbio.0050237openalex-snapshot
High-Throughput In Vivo Analysis of Gene Expression in Caenorhabditis elegans
inferredcites →https://doi.org/10.1387/ijdb.11291846openalex-snapshot
Molecular mechanisms of cell-cell signaling by the Spemann-Mangold organizer
inferredcites →https://doi.org/10.1387/ijdb.11291864openalex-snapshot
The role of Otx2 in organizing the anterior patterning in mouse
inferredcites →https://doi.org/10.1387/ijdb.11902672openalex-snapshot
Loss and gain of domains during evolution of cut superclass homeobox genes
inferredcites →https://doi.org/10.1615/critreveukargeneexpr.v22.i2.70openalex-snapshot
PAX Proteins and Fables of Their Reconstruction
inferredcites →https://doi.org/10.1895/wormbook.1.108.1openalex-snapshot
Transformation and microinjection

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The homeodomain transcription factor CEH-37 regulates PMK-1/p38 MAPK pathway to protect against intestinal infection via the phosphatase VHP-1
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inferred← citeshttps://doi.org/10.1038/s41556-020-0504-1openalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s41583-021-00497-xopenalex-snapshot
Homeobox genes and the specification of neuronal identity
inferred← citeshttps://doi.org/10.1038/s41586-020-2618-9openalex-snapshot
Unique homeobox codes delineate all the neuron classes of C. elegans
inferred← citeshttps://doi.org/10.1038/s41598-018-35547-5openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/gbe/evy170openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/114074openalex-snapshot
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inferred← citeshttps://doi.org/10.1101/2023.05.02.538881openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12864-022-08304-2openalex-snapshot
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Almost 40 years of studying homeobox genes in C. elegans
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OFF-responses of interneurons optimize avoidance behaviors depending on stimulus strength via electrical synapses
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Novel exc Genes Involved in Formation of the Tubular Excretory Canals of Caenorhabditis elegans
inferred← citeshttps://doi.org/10.17912/micropub.biology.000340openalex-snapshot
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