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Estimating the proportion of disease heritability mediated by gene expression levels

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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The investigation of linkage between a quantitative trait and a marker locus

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Gene Expression in Skin and Lymphoblastoid Cells: Refined Statistical Method Reveals Extensive Overlap in cis-eQTL Signals

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GCTA: A Tool for Genome-wide Complex Trait Analysis

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Integrating Autoimmune Risk Loci with Gene-Expression Data Identifies Specific Pathogenic Immune Cell Subsets

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Cross-Tissue and Tissue-Specific eQTLs: Partitioning the Heritability of a Complex Trait

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Partitioning Heritability of Regulatory and Cell-Type-Specific Variants across 11 Common Diseases

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Contrasting the Genetic Architecture of 30 Complex Traits from Summary Association Data

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Integrating Gene Expression with Summary Association Statistics to Identify Genes Associated with 30 Complex Traits

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Functional Architectures of Local and Distal Regulation of Gene Expression in Multiple Human Tissues

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Local Genetic Correlation Gives Insights into the Shared Genetic Architecture of Complex Traits

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Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

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Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

inferredcites →https://doi.org/10.1016/j.cell.2016.10.026openalex-snapshot

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells

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Transcriptome and genome sequencing uncovers functional variation in humans

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Genetic and epigenetic fine mapping of causal autoimmune disease variants

inferredcites →https://doi.org/10.1038/ncomms8211openalex-snapshot

Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants

inferredcites →https://doi.org/10.1038/ncomms9016openalex-snapshot

Erratum: Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants

inferredcites →https://doi.org/10.1038/ng.2504openalex-snapshot

Chromatin marks identify critical cell types for fine mapping complex trait variants

inferredcites →https://doi.org/10.1038/ng.2951openalex-snapshot

Heritability and genomics of gene expression in peripheral blood

inferredcites →https://doi.org/10.1038/ng.3190openalex-snapshot

Efficient Bayesian mixed-model analysis increases association power in large cohorts

inferredcites →https://doi.org/10.1038/ng.3211openalex-snapshot

LD Score regression distinguishes confounding from polygenicity in genome-wide association studies

inferredcites →https://doi.org/10.1038/ng.3220openalex-snapshot

Identification of common genetic variants controlling transcript isoform variation in human whole blood

inferredcites →https://doi.org/10.1038/ng.3367openalex-snapshot

A gene-based association method for mapping traits using reference transcriptome data

inferredcites →https://doi.org/10.1038/ng.3404openalex-snapshot

Partitioning heritability by functional annotation using genome-wide association summary statistics

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An atlas of genetic correlations across human diseases and traits

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Integrative approaches for large-scale transcriptome-wide association studies

inferredcites →https://doi.org/10.1038/ng.3538openalex-snapshot

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

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Tensor decomposition for multiple-tissue gene expression experiments

inferredcites →https://doi.org/10.1038/ng.3737openalex-snapshot

Identification of context-dependent expression quantitative trait loci in whole blood

inferredcites →https://doi.org/10.1038/ng.3795openalex-snapshot

Limited statistical evidence for shared genetic effects of eQTLs and autoimmune-disease-associated loci in three major immune-cell types

inferredcites →https://doi.org/10.1038/ng.608openalex-snapshot

Common SNPs explain a large proportion of the heritability for human height

inferredcites →https://doi.org/10.1038/ng.823openalex-snapshot

Genome partitioning of genetic variation for complex traits using common SNPs

inferredcites →https://doi.org/10.1038/nprot.2011.457openalex-snapshot

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

inferredcites →https://doi.org/10.1038/nrg.2016.142openalex-snapshot

Dissecting the genetics of complex traits using summary association statistics

inferredcites →https://doi.org/10.1073/pnas.0903103106openalex-snapshot

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

inferredcites →https://doi.org/10.1073/pnas.1419064111openalex-snapshot

Measuring missing heritability: Inferring the contribution of common variants

inferredcites →https://doi.org/10.1093/bioinformatics/btv722openalex-snapshot

Fast and efficient QTL mapper for thousands of molecular phenotypes

inferredcites →https://doi.org/10.1126/science.1222794openalex-snapshot

Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

inferredcites →https://doi.org/10.1126/science.1242429openalex-snapshot

Identification of Genetic Variants That Affect Histone Modifications in Human Cells

inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot

Second-generation PLINK: rising to the challenge of larger and richer datasets

inferredcites →https://doi.org/10.1371/journal.pgen.1000888openalex-snapshot

Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS

inferredcites →https://doi.org/10.1371/journal.pgen.1001317openalex-snapshot

Single-Tissue and Cross-Tissue Heritability of Gene Expression Via Identity-by-Descent in Related or Unrelated Individuals

inferredcites →https://doi.org/10.1371/journal.pgen.1003864openalex-snapshot

Partitioning the Heritability of Tourette Syndrome and Obsessive Compulsive Disorder Reveals Differences in Genetic Architecture

inferredcites →https://doi.org/10.1371/journal.pgen.1004383openalex-snapshot

Bayesian Test for Colocalisation between Pairs of Genetic Association Studies Using Summary Statistics

inferredcites →https://doi.org/10.1371/journal.pgen.1004404openalex-snapshot

Regulation of Gene Expression in Autoimmune Disease Loci and the Genetic Basis of Proliferation in CD4+ Effector Memory T Cells

inferredcites →https://doi.org/10.1371/journal.pgen.1004818openalex-snapshot

Mediation Analysis Demonstrates That Trans-eQTLs Are Often Explained by Cis-Mediation: A Genome-Wide Analysis among 1,800 South Asians

inferredcites →https://doi.org/10.1371/journal.pgen.1005622openalex-snapshot

Disproportionate Contributions of Select Genomic Compartments and Cell Types to Genetic Risk for Coronary Artery Disease

inferredcites →https://doi.org/10.1371/journal.pmed.1001779openalex-snapshot

UK Biobank: An Open Access Resource for Identifying the Causes of a Wide Range of Complex Diseases of Middle and Old Age

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.rdc.2017.04.012openalex-snapshot

Integrative Approaches to Understanding the Pathogenic Role of Genetic Variation in Rheumatic Diseases

inferred← citeshttps://doi.org/10.1038/s41588-019-0345-7openalex-snapshot

A statistical framework for cross-tissue transcriptome-wide association analysis

inferred← citeshttps://doi.org/10.1038/s41588-020-0625-2openalex-snapshot

Quantifying genetic effects on disease mediated by assayed gene expression levels

inferred← citeshttps://doi.org/10.1101/164707openalex-snapshot

Polygenic selection underlies evolution of human brain structure and behavioral traits

inferred← citeshttps://doi.org/10.1101/546580openalex-snapshot

Quantifying the impact of genetically regulated expression on complex traits and diseases

inferred← citeshttps://doi.org/10.1101/gr.227819.117openalex-snapshot

Sequential regulatory activity prediction across chromosomes with convolutional neural networks

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A unified quantile framework for nonlinear heterogeneous transcriptome-wide associations

inferred← citeshttps://doi.org/10.1534/g3.118.200571openalex-snapshot

GWAS with Heterogeneous Data: Estimating the Fraction of Phenotypic Variation Mediated by Gene Expression Data

inferred← citeshttps://doi.org/10.7287/peerj.3696v0.1/reviews/1openalex-snapshot

Peer Review #1 of "RNA expression and disease tolerance are associated with a “keystone mutation” in the ochre sea star Pisaster ochraceus (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.3696v0.1/reviews/2openalex-snapshot

Peer Review #2 of "RNA expression and disease tolerance are associated with a “keystone mutation” in the ochre sea star Pisaster ochraceus (v0.1)"

inferred← citeshttps://doi.org/10.7717/peerj.3696openalex-snapshot

RNA expression and disease tolerance are associated with a “keystone mutation” in the ochre sea star Pisaster ochraceus

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