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Quantifying the impact of genetically regulated expression on complex traits and diseases

https://doi.org/10.1101/546580
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00439-010-0849-9openalex-snapshot
Genome-wide searching of rare genetic variants in WTCCC data
inferredcites →https://doi.org/10.1016/j.ajhg.2016.12.008openalex-snapshot
The Genetic Architecture of Gene Expression in Peripheral Blood
inferredcites →https://doi.org/10.1016/j.ajhg.2017.01.031openalex-snapshot
Integrating Gene Expression with Summary Association Statistics to Identify Genes Associated with 30 Complex Traits
inferredcites →https://doi.org/10.1016/j.ajhg.2017.02.003openalex-snapshot
Dynamic Role of trans Regulation of Gene Expression in Relation to Complex Traits
inferredcites →https://doi.org/10.1016/s0021-9258(19)86495-5openalex-snapshot
Increased binding of low density lipoprotein to liver membranes from rats treated with 17 alpha-ethinyl estradiol.
inferredcites →https://doi.org/10.1016/s0022-2275(20)35728-xopenalex-snapshot
Role of liver in the maintenance of cholesterol and low density lipoprotein homeostasis in different animal species, including humans
inferredcites →https://doi.org/10.1016/s0140-6736(12)62129-1openalex-snapshot
Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis
inferredcites →https://doi.org/10.1016/s0140-6736(13)60888-0openalex-snapshot
Department of Error
inferredcites →https://doi.org/10.1038/271501a0openalex-snapshot
Why genes in pieces?
inferredcites →https://doi.org/10.1038/nature05911openalex-snapshot
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
inferredcites →https://doi.org/10.1038/nature09266openalex-snapshot
From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus
inferredcites →https://doi.org/10.1038/nature09753openalex-snapshot
9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response
inferredcites →https://doi.org/10.1038/nature13595openalex-snapshot
Biological insights from 108 schizophrenia-associated genetic loci
inferredcites →https://doi.org/10.1038/nature14132openalex-snapshot
New genetic loci link adipose and insulin biology to body fat distribution
inferredcites →https://doi.org/10.1038/nature24277openalex-snapshot
Genetic effects on gene expression across human tissues
inferredcites →https://doi.org/10.1038/ncomms11122openalex-snapshot
Genome-wide study for circulating metabolites identifies 62 loci and reveals novel systemic effects of LPA
inferredcites →https://doi.org/10.1038/ncomms14519openalex-snapshot
Genome-wide identification of splicing QTLs in the human brain and their enrichment among schizophrenia-associated loci
inferredcites →https://doi.org/10.1038/ng.2394openalex-snapshot
Mapping cis- and trans-regulatory effects across multiple tissues in twins
inferredcites →https://doi.org/10.1038/ng.271openalex-snapshot
Genome-wide association analysis of metabolic traits in a birth cohort from a founder population
inferredcites →https://doi.org/10.1038/ng.2742openalex-snapshot
Genome-wide association analysis identifies 13 new risk loci for schizophrenia
inferredcites →https://doi.org/10.1038/ng.2756openalex-snapshot
Systematic identification of trans eQTLs as putative drivers of known disease associations
inferredcites →https://doi.org/10.1038/ng.2951openalex-snapshot
Heritability and genomics of gene expression in peripheral blood
inferredcites →https://doi.org/10.1038/ng.3097openalex-snapshot
Defining the role of common variation in the genomic and biological architecture of adult human height
inferredcites →https://doi.org/10.1038/ng.3211openalex-snapshot
LD Score regression distinguishes confounding from polygenicity in genome-wide association studies
inferredcites →https://doi.org/10.1038/ng.3367openalex-snapshot
A gene-based association method for mapping traits using reference transcriptome data
inferredcites →https://doi.org/10.1038/ng.3506openalex-snapshot
Integrative approaches for large-scale transcriptome-wide association studies
inferredcites →https://doi.org/10.1038/ng.3538openalex-snapshot
Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets
inferredcites →https://doi.org/10.1038/ng.3931openalex-snapshot
Classification of common human diseases derived from shared genetic and environmental determinants
inferredcites →https://doi.org/10.1038/ng.403openalex-snapshot
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer
inferredcites →https://doi.org/10.1038/ng.940openalex-snapshot
Genome-wide association study identifies five new schizophrenia loci
inferredcites →https://doi.org/10.1038/nrg2537openalex-snapshot
Mapping complex disease traits with global gene expression
inferredcites →https://doi.org/10.1038/nrg3891openalex-snapshot
The role of regulatory variation in complex traits and disease
inferredcites →https://doi.org/10.1038/s41467-018-04558-1openalex-snapshot
Identifying gene targets for brain-related traits using transcriptomic and methylomic data from blood
inferredcites →https://doi.org/10.1038/s41576-018-0016-zopenalex-snapshot
From genome-wide associations to candidate causal variants by statistical fine-mapping
inferredcites →https://doi.org/10.1038/s41586-018-0175-2openalex-snapshot
Genomic atlas of the human plasma proteome
inferredcites →https://doi.org/10.1038/s41588-017-0004-9openalex-snapshot
Annotation-free quantification of RNA splicing using LeafCutter
inferredcites →https://doi.org/10.1038/s41588-018-0154-4openalex-snapshot
Using an atlas of gene regulation across 44 human tissues to inform complex disease- and trait-associated variation
inferredcites →https://doi.org/10.1038/s41588-018-0313-7openalex-snapshot
Repurposing large health insurance claims data to estimate genetic and environmental contributions in 560 phenotypes
inferredcites →https://doi.org/10.1038/s41588-019-0367-1openalex-snapshot
Probabilistic fine-mapping of transcriptome-wide association studies
inferredcites →https://doi.org/10.1038/s41588-021-00913-zopenalex-snapshot
Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression
inferredcites →https://doi.org/10.1073/pnas.0903103106openalex-snapshot
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
inferredcites →https://doi.org/10.1080/10618600.2018.1529601openalex-snapshot
MM Algorithms for Variance Components Models
inferredcites →https://doi.org/10.1093/bioinformatics/bty865openalex-snapshot
CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information
inferredcites →https://doi.org/10.1093/biomet/43.3-4.353openalex-snapshot
NOTES ON BIAS IN ESTIMATION
inferredcites →https://doi.org/10.1093/biomet/85.4.755openalex-snapshot
Parameter expansion to accelerate EM: the PX-EM algorithm
inferredcites →https://doi.org/10.1101/108316openalex-snapshot
Modeling prediction error improves power of transcriptome-wide association studies
inferredcites →https://doi.org/10.1101/118018openalex-snapshot
Estimating the proportion of disease heritability mediated by gene expression levels
inferredcites →https://doi.org/10.1126/science.1222794openalex-snapshot
Systematic Localization of Common Disease-Associated Variation in Regulatory DNA
inferredcites →https://doi.org/10.1126/science.1260793openalex-snapshot
Impact of regulatory variation from RNA to protein
inferredcites →https://doi.org/10.1126/science.aad6970openalex-snapshot
Cardiometabolic risk loci share downstream cis- and trans-gene regulation across tissues and diseases
inferredcites →https://doi.org/10.1126/science.aad9417openalex-snapshot
RNA splicing is a primary link between genetic variation and disease
inferredcites →https://doi.org/10.1186/s13059-020-02125-wopenalex-snapshot
Primo: integration of multiple GWAS and omics QTL summary statistics for elucidation of molecular mechanisms of trait-associated SNPs and detection of pleiotropy in complex traits
inferredcites →https://doi.org/10.1214/15-aos1421openalex-snapshot
On high-dimensional misspecified mixed model analysis in genome-wide association study
inferredcites →https://doi.org/10.1214/17-aoas1052openalex-snapshot
A unified framework for variance component estimation with summary statistics in genome-wide association studies
inferredcites →https://doi.org/10.1371/journal.pgen.1000888openalex-snapshot
Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS
inferredcites →https://doi.org/10.1371/journal.pgen.1006166openalex-snapshot
Correction: The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study
inferredcites →https://doi.org/10.1371/journal.pgen.1006423openalex-snapshot
Survey of the Heritability and Sparse Architecture of Gene Expression Traits across Human Tissues
inferredcites →https://doi.org/10.34944/dspace/4648openalex-snapshot
Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics
inferredcites →https://doi.org/10.48550/arxiv.1509.07426openalex-snapshot
MM Algorithms for Variance Components Models

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1080/01621459.2023.2183127openalex-snapshot
Causal Inference in Transcriptome-Wide Association Studies with Invalid Instruments and GWAS Summary Data
inferred← citeshttps://doi.org/10.1093/hmg/ddz314openalex-snapshot
Integrating DNA sequencing and transcriptomic data for association analyses of low-frequency variants and lipid traits
inferred← citeshttps://doi.org/10.1371/journal.pgen.1009105openalex-snapshot
Inferring causal direction between two traits in the presence of horizontal pleiotropy with GWAS summary data
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