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Transcription activation of early human development suggests DUX4 as an embryonic regulator

https://doi.org/10.1101/123208
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gcc.20465openalex-snapshot
Hypomethylation of PRAME is responsible for its aberrant overexpression in human malignancies
inferredcites →https://doi.org/10.1006/geno.1997.5117openalex-snapshot
cDNA Libraries from Single Human Preimplantation Embryos
inferredcites →https://doi.org/10.1007/s10815-010-9407-6openalex-snapshot
Genome-wide microarray evidence that 8-cell human blastomeres over-express cell cycle drivers and under-express checkpoints
inferredcites →https://doi.org/10.1016/0092-8674(89)90936-7openalex-snapshot
Isolation of a human cyclin cDNA: Evidence for cyclin mRNA and protein regulation in the cell cycle and for interaction with p34cdc2
inferredcites →https://doi.org/10.1016/j.cell.2005.07.003openalex-snapshot
The Human Tumor Antigen PRAME Is a Dominant Repressor of Retinoic Acid Receptor Signaling
inferredcites →https://doi.org/10.1016/j.devcel.2011.11.013openalex-snapshot
DUX4 Activates Germline Genes, Retroelements, and Immune Mediators: Implications for Facioscapulohumeral Dystrophy
inferredcites →https://doi.org/10.1016/j.tig.2008.11.005openalex-snapshot
Methylation and deamination of CpGs generate p53-binding sites on a genomic scale
inferredcites →https://doi.org/10.1016/j.ydbio.2006.06.024openalex-snapshot
Analysis of polysomal mRNA populations of mouse oocytes and zygotes: Dynamic changes in maternal mRNA utilization and function
inferredcites →https://doi.org/10.1016/j.ydbio.2007.05.003openalex-snapshot
Zscan4: A novel gene expressed exclusively in late 2-cell embryos and embryonic stem cells
inferredcites →https://doi.org/10.1016/j.ygeno.2007.06.003openalex-snapshot
Atypical structure and phylogenomic evolution of the new eutherian oocyte- and embryo-expressed KHDC1/DPPA5/ECAT1/OOEP gene family
inferredcites →https://doi.org/10.1016/s0092-8674(00)81769-9openalex-snapshot
Formation of Pluripotent Stem Cells in the Mammalian Embryo Depends on the POU Transcription Factor Oct4
inferredcites →https://doi.org/10.1016/s0092-8674(01)00340-3openalex-snapshot
Securin Is Required for Chromosomal Stability in Human Cells
inferredcites →https://doi.org/10.1016/s0092-8674(03)00393-3openalex-snapshot
The Homeoprotein Nanog Is Required for Maintenance of Pluripotency in Mouse Epiblast and ES Cells
inferredcites →https://doi.org/10.1017/s0967199400002100openalex-snapshot
Transcription of paternal Y-linked genes in the human zygote as early as the pronucleate stage
inferredcites →https://doi.org/10.1038/332459a0openalex-snapshot
Human gene expression first occurs between the four- and eight-cell stages of preimplantation development
inferredcites →https://doi.org/10.1038/emboj.2008.201openalex-snapshot
An isogenetic myoblast expression screen identifies DUX4‐mediated FSHD‐associated molecular pathologies
inferredcites →https://doi.org/10.1038/nbt.1686openalex-snapshot
Non-invasive imaging of human embryos before embryonic genome activation predicts development to the blastocyst stage
inferredcites →https://doi.org/10.1038/ng.368openalex-snapshot
The regulated retrotransposon transcriptome of mammalian cells
inferredcites →https://doi.org/10.1038/ng1002-222openalex-snapshot
Securin a new role for itself
inferredcites →https://doi.org/10.1038/nprot.2009.236openalex-snapshot
RNA-Seq analysis to capture the transcriptome landscape of a single cell
inferredcites →https://doi.org/10.1038/nprot.2012.022openalex-snapshot
Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing
inferredcites →https://doi.org/10.1073/pnas.012539199openalex-snapshot
Short interspersed transposable elements (SINEs) are excluded from imprinted regions in the human genome
inferredcites →https://doi.org/10.1093/bioinformatics/btp120openalex-snapshot
TopHat: discovering splice junctions with RNA-Seq
inferredcites →https://doi.org/10.1093/hmg/ddh157openalex-snapshot
The unique transcriptome through day 3 of human preimplantation development
inferredcites →https://doi.org/10.1093/humrep/16.12.2652openalex-snapshot
Early embryo cleavage is a strong indicator of embryo quality in human IVF
inferredcites →https://doi.org/10.1093/humrep/deh070openalex-snapshot
Computer-controlled, multilevel, morphometric analysis of blastomere size as biomarker of fragmentation and multinuclearity in human embryos
inferredcites →https://doi.org/10.1093/humrep/den190openalex-snapshot
The four blastomeres of a 4-cell stage human embryo are able to develop individually into blastocysts with inner cell mass and trophectoderm
inferredcites →https://doi.org/10.1093/humrep/dep262openalex-snapshot
Human embryonic stem cell lines derived from single blastomeres of two 4-cell stage embryos
inferredcites →https://doi.org/10.1093/humupd/dmq036openalex-snapshot
Dynamic changes in gene expression during human early embryo development: from fundamental aspects to clinical applications
inferredcites →https://doi.org/10.1093/nar/gkq963openalex-snapshot
The UCSC Genome Browser database: update 2011
inferredcites →https://doi.org/10.1095/biolreprod.102.007906openalex-snapshot
MuERV-L Is One of the Earliest Transcribed Genes in Mouse One-Cell Embryos1
inferredcites →https://doi.org/10.1095/biolreprod.109.082057openalex-snapshot
P-Body Loss Is Concomitant with Formation of a Messenger RNA Storage Domain in Mouse Oocytes1
inferredcites →https://doi.org/10.1101/gr.110882.110openalex-snapshot
Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq
inferredcites →https://doi.org/10.1101/gr.2693004openalex-snapshot
Whole-genome analysis ofAlurepeat elements reveals complex evolutionary history
inferredcites →https://doi.org/10.1177/0962280211428386openalex-snapshot
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
inferredcites →https://doi.org/10.1186/1471-2164-8-23openalex-snapshot
Widespread Alu repeat-driven expansion of consensus DR2 retinoic acid response elements during primate evolution
inferredcites →https://doi.org/10.1242/dev.01801openalex-snapshot
Cdx2 is required for correct cell fate specification and differentiation of trophectoderm in the mouse blastocyst
inferredcites →https://doi.org/10.1371/journal.pgen.1001181openalex-snapshot
Facioscapulohumeral Dystrophy: Incomplete Suppression of a Retrotransposed Gene
inferredcites →https://doi.org/10.1371/journal.pone.0007844openalex-snapshot
Transcriptome Profiling of Human Pre-Implantation Development
inferredcites →https://doi.org/10.1371/journal.pone.0013615openalex-snapshot
Functional Genomics of 5- to 8-Cell Stage Human Embryos by Blastomere Single-Cell cDNA Analysis
inferredcites →https://doi.org/10.1530/rep.1.00217openalex-snapshot
DNA methylation pattern in human zygotes and developing embryos
inferredcites →https://doi.org/10.1621/nrs.07002openalex-snapshot
Function of retinoic acid receptors during embryonic development
inferredcites →https://doi.org/10.2741/2346openalex-snapshot
Mechanisms of maternal mRNA regulation: implications for mammalian early embryonic development

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/bs.ctdb.2017.11.004openalex-snapshot
Human Pre-gastrulation Development
inferred← citeshttps://doi.org/10.1016/j.gde.2018.04.005openalex-snapshot
Functional genetics of early human development
inferred← citeshttps://doi.org/10.1016/j.gpb.2020.09.004openalex-snapshot
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement
inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.06.002openalex-snapshot
Transient DUX4 expression in human embryonic stem cells induces blastomere-like expression program that is marked by SLC34A2
inferred← citeshttps://doi.org/10.1038/s41419-023-06257-2openalex-snapshot
Flavones provide resistance to DUX4-induced toxicity via an mTor-independent mechanism
inferred← citeshttps://doi.org/10.1038/s41598-019-44882-0openalex-snapshot
Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development
inferred← citeshttps://doi.org/10.1101/305375openalex-snapshot
Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development
inferred← citeshttps://doi.org/10.1101/732289openalex-snapshot
DUX4 regulates oocyte to embryo transition in human
inferred← citeshttps://doi.org/10.64898/2026.03.05.709741openalex-snapshot
Structure and genomic organization of the human DUX4 homologue bovine DUXC
inferred← citeshttps://doi.org/10.69622/28731794openalex-snapshot
Oxygen levels regulating embryonic genome activation
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