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DUX4 regulates oocyte to embryo transition in human
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/0471142727.mb2129s109openalex-snapshot
ATAC‐seq: A Method for Assaying Chromatin Accessibility Genome‐Wide
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UCSF Chimera—A visualization system for exploratory research and analysis
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Accurate prediction of solvent accessibility using neural networks–based regression
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BODIL: a molecular modeling environment for structure-function analysis and drug design
inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-snapshot
VMD: Visual molecular dynamics
inferredcites →https://doi.org/10.1016/j.celrep.2018.11.060openalex-snapshot
Crystal Structure of the Double Homeodomain of DUX4 in Complex with DNA
inferredcites →https://doi.org/10.1016/j.devcel.2011.11.013openalex-snapshot
DUX4 Activates Germline Genes, Retroelements, and Immune Mediators: Implications for Facioscapulohumeral Dystrophy
inferredcites →https://doi.org/10.1016/j.devcel.2017.07.026openalex-snapshot
Zygotic Genome Activation in Vertebrates
inferredcites →https://doi.org/10.1016/j.gde.2011.03.003openalex-snapshot
Transcript clearance during the maternal-to-zygotic transition
inferredcites →https://doi.org/10.1016/j.molcel.2010.05.004openalex-snapshot
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
inferredcites →https://doi.org/10.1016/j.molcel.2016.03.029openalex-snapshot
Long Terminal Repeats: From Parasitic Elements to Building Blocks of the Transcriptional Regulatory Repertoire
inferredcites →https://doi.org/10.1016/j.molcel.2016.09.002openalex-snapshot
Tail and Kinase Modules Differently Regulate Core Mediator Recruitment and Function In Vivo
inferredcites →https://doi.org/10.1016/j.molcel.2016.09.015openalex-snapshot
Mediator Undergoes a Compositional Change during Transcriptional Activation
inferredcites →https://doi.org/10.1016/j.pep.2005.01.016openalex-snapshot
Protein production by auto-induction in high-density shaking cultures
inferredcites →https://doi.org/10.1016/j.stem.2019.09.004openalex-snapshot
Single-Cell Transcriptome Analysis of Uniparental Embryos Reveals Parent-of-Origin Effects on Human Preimplantation Development
inferredcites →https://doi.org/10.1016/j.stemcr.2015.08.001openalex-snapshot
Conditionally Stabilized dCas9 Activator for Controlling Gene Expression in Human Cell Reprogramming and Differentiation
inferredcites →https://doi.org/10.1016/j.ygeno.2007.02.003openalex-snapshot
Nine-amino-acid transactivation domain: Establishment and prediction utilities
inferredcites →https://doi.org/10.1016/s0925-4773(01)00635-9openalex-snapshot
The ret finger protein-like 4 gene, Rfpl4, encodes a putative E3 ubiquitin-protein ligase expressed in adult germ cells
inferredcites →https://doi.org/10.1021/acs.jctc.5b00255openalex-snapshot
ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB
inferredcites →https://doi.org/10.1021/acs.jctc.5b00716openalex-snapshot
Refinement of the Sugar–Phosphate Backbone Torsion Beta for AMBER Force Fields Improves the Description of Z- and B-DNA
inferredcites →https://doi.org/10.1021/cb4002188openalex-snapshot
Allosteric Communication in the KIX Domain Proceeds through Dynamic Repacking of the Hydrophobic Core
inferredcites →https://doi.org/10.1021/ct400341popenalex-snapshot
PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data
inferredcites →https://doi.org/10.1038/332459a0openalex-snapshot
Human gene expression first occurs between the four- and eight-cell stages of preimplantation development
inferredcites →https://doi.org/10.1038/nature12364openalex-snapshot
Genetic programs in human and mouse early embryos revealed by single-cell RNA sequencing
inferredcites →https://doi.org/10.1038/nature12787openalex-snapshot
An atlas of active enhancers across human cell types and tissues
inferredcites →https://doi.org/10.1038/nature13182openalex-snapshot
A promoter-level mammalian expression atlas
inferredcites →https://doi.org/10.1038/ncomms9207openalex-snapshot
Novel PRD-like homeodomain transcription factors and retrotransposon elements in early human development
inferredcites →https://doi.org/10.1038/ng.3844openalex-snapshot
Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons
inferredcites →https://doi.org/10.1038/ng.3846openalex-snapshot
Conservation and innovation in the DUX4-family gene network
inferredcites →https://doi.org/10.1038/ng.3858openalex-snapshot
DUX-family transcription factors regulate zygotic genome activation in placental mammals
inferredcites →https://doi.org/10.1038/nmeth.1541openalex-snapshot
SAINT: probabilistic scoring of affinity purification–mass spectrometry data
inferredcites →https://doi.org/10.1038/nmeth.2400openalex-snapshot
Interlaboratory reproducibility of large-scale human protein-complex analysis by standardized AP-MS
inferredcites →https://doi.org/10.1038/nmeth.2557openalex-snapshot
The CRAPome: a contaminant repository for affinity purification–mass spectrometry data
inferredcites →https://doi.org/10.1038/nmeth.2645openalex-snapshot
Accounting for technical noise in single-cell RNA-seq experiments
inferredcites →https://doi.org/10.1038/nmeth.2772openalex-snapshot
Quantitative single-cell RNA-seq with unique molecular identifiers
inferredcites →https://doi.org/10.1038/nprot.2009.236openalex-snapshot
RNA-Seq analysis to capture the transcriptome landscape of a single cell
inferredcites →https://doi.org/10.1038/nprot.2012.022openalex-snapshot
Highly multiplexed and strand-specific single-cell RNA 5′ end sequencing
inferredcites →https://doi.org/10.1038/nsmb.2660openalex-snapshot
Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells
inferredcites →https://doi.org/10.1038/s41375-018-0093-1openalex-snapshot
Structural basis of DUX4/IGH-driven transactivation
inferredcites →https://doi.org/10.1038/s41467-018-03523-2openalex-snapshot
An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations
inferredcites →https://doi.org/10.1038/s41467-018-05067-xopenalex-snapshot
Human pluripotent reprogramming with CRISPR activators
inferredcites →https://doi.org/10.1038/s41467-018-08244-0openalex-snapshot
An integrated chromatin accessibility and transcriptome landscape of human pre-implantation embryos
inferredcites →https://doi.org/10.1038/s41467-019-10502-8openalex-snapshot
Mediator complex interaction partners organize the transcriptional network that defines neural stem cells
inferredcites →https://doi.org/10.1038/s41586-018-0080-8openalex-snapshot
Chromatin analysis in human early development reveals epigenetic transition during ZGA
inferredcites →https://doi.org/10.1038/s41588-019-0418-7openalex-snapshot
Loss of DUX causes minor defects in zygotic genome activation and is compatible with mouse development
inferredcites →https://doi.org/10.1038/s41588-019-0485-9openalex-snapshot
NET-CAGE characterizes the dynamics and topology of human transcribed cis-regulatory elements
inferredcites →https://doi.org/10.1038/s41598-018-35547-5openalex-snapshot
Phylogenetic and mutational analyses of human LEUTX, a homeobox gene implicated in embryogenesis
inferredcites →https://doi.org/10.1038/s41598-019-44882-0openalex-snapshot
Pleomorphic Adenoma Gene 1 Is Needed For Timely Zygotic Genome Activation and Early Embryo Development
inferredcites →https://doi.org/10.1063/1.445869openalex-snapshot
Comparison of simple potential functions for simulating liquid water
inferredcites →https://doi.org/10.1063/1.448118openalex-snapshot
Molecular dynamics with coupling to an external bath
inferredcites →https://doi.org/10.1073/pnas.0234474100openalex-snapshot
RFPL4 interacts with oocyte proteins of the ubiquitin-proteasome degradation pathway
inferredcites →https://doi.org/10.1074/jbc.m207660200openalex-snapshot
Cooperativity in Transcription Factor Binding to the Coactivator CREB-binding Protein (CBP)
inferredcites →https://doi.org/10.1074/jbc.m805717200openalex-snapshot
The Solution Structure of DNA-free Pax-8 Paired Box Domain Accounts for Redox Regulation of Transcriptional Activity in the Pax Protein Family
inferredcites →https://doi.org/10.1074/jbc.r117.813485openalex-snapshot
Emerging roles of transcriptional enhancers in chromatin looping and promoter-proximal pausing of RNA polymerase II
inferredcites →https://doi.org/10.1089/scd.2012.0643openalex-snapshot
Expression of the Human FSHD-Linked DUX4 Gene Induces Neurogenesis During Differentiation of Murine Embryonic Stem Cells
inferredcites →https://doi.org/10.1093/bioinformatics/bth248openalex-snapshot
POLYVIEW: a flexible visualization tool for structural and functional annotations of proteins
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btt511openalex-snapshot
SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization
inferredcites →https://doi.org/10.1093/bioinformatics/btu352openalex-snapshot
SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity
inferredcites →https://doi.org/10.1093/biolre/ioy013openalex-snapshot
The oocyte-to-embryo transition in mouse: past, present, and future†
inferredcites →https://doi.org/10.1093/hmg/ddp022openalex-snapshot
Retrotransposon RNA expression and evidence for retrotransposition events in human oocytes
inferredcites →https://doi.org/10.1093/hmg/ddw287openalex-snapshot
Mouse Dux is myotoxic and shares partial functional homology with its human paralog DUX4
inferredcites →https://doi.org/10.1093/humrep/dew008openalex-snapshot
Single-cell transcriptome analysis of endometrial tissue
inferredcites →https://doi.org/10.1093/humupd/dmx040openalex-snapshot
Acquisition of oocyte competence to develop as an embryo: integrated nuclear and cytoplasmic events
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molehr/gax008openalex-snapshot
Zona pellucida gene mRNA expression in human oocytes is related to oocyte maturity, zona inner layer retardance and fertilization competence
inferredcites →https://doi.org/10.1093/nar/gki396openalex-snapshot
SCRATCH: a protein structure and structural feature prediction server
inferredcites →https://doi.org/10.1093/nar/gkn201openalex-snapshot
NCBI BLAST: a better web interface
inferredcites →https://doi.org/10.1093/nar/gkp914openalex-snapshot
CORUM: the comprehensive resource of mammalian protein complexes—2009
inferredcites →https://doi.org/10.1093/nar/gkr218openalex-snapshot
Efficient design and assembly of custom TALEN and other TAL effector-based constructs for DNA targeting
inferredcites →https://doi.org/10.1093/nar/gks042openalex-snapshot
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
inferredcites →https://doi.org/10.1093/nar/gku365openalex-snapshot
deepTools: a flexible platform for exploring deep-sequencing data
inferredcites →https://doi.org/10.1093/nar/gku975openalex-snapshot
The complex portal - an encyclopaedia of macromolecular complexes
inferredcites →https://doi.org/10.1093/nar/gkw141openalex-snapshot
DUX4 recruits p300/CBP through its C-terminus and induces global H3K27 acetylation changes
inferredcites →https://doi.org/10.1093/nar/gkw306openalex-snapshot
RaptorX-Property: a web server for protein structure property prediction
inferredcites →https://doi.org/10.1093/nar/gkx356openalex-snapshot
WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit
inferredcites →https://doi.org/10.1093/nar/gky973openalex-snapshot
CORUM: the comprehensive resource of mammalian protein complexes—2019
inferredcites →https://doi.org/10.1101/123208openalex-snapshot
Transcription activation of early human development suggests DUX4 as an embryonic regulator
inferredcites →https://doi.org/10.1101/523712openalex-snapshot
Transposable elements drive reorganisation of 3D chromatin during early embryogenesis
inferredcites →https://doi.org/10.1101/gr.135350.111openalex-snapshot
GENCODE: The reference human genome annotation for The ENCODE Project
inferredcites →https://doi.org/10.1101/gr.216150.116openalex-snapshot
Long terminal repeats power evolution of genes and gene expression programs in mammalian oocytes and zygotes
inferredcites →https://doi.org/10.1126/science.1259418openalex-snapshot
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
inferredcites →https://doi.org/10.1146/annurev-cellbio-100913-013027openalex-snapshot
Zygotic Genome Activation During the Maternal-to-Zygotic Transition
inferredcites →https://doi.org/10.1177/0962280211428386openalex-snapshot
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
inferredcites →https://doi.org/10.1186/1471-2105-15-144openalex-snapshot
MOIRAI: a compact workflow system for CAGE analysis
inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot
WGCNA: an R package for weighted correlation network analysis
inferredcites →https://doi.org/10.1186/s13059-016-0991-3openalex-snapshot
Tracing the expression of circular RNAs in human pre-implantation embryos
inferredcites →https://doi.org/10.1210/me.9.1.131openalex-snapshot
Oocyte-specific expression of growth/differentiation factor-9
inferredcites →https://doi.org/10.1242/bio.033977openalex-snapshot
Functional domains of the FSHD-associated DUX4 protein
inferredcites →https://doi.org/10.1242/dev.033183openalex-snapshot
The maternal-to-zygotic transition: a play in two acts
inferredcites →https://doi.org/10.1242/dev.123547openalex-snapshot
Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
inferredcites →https://doi.org/10.1242/dev.131235openalex-snapshot
Defining the three cell lineages of the human blastocyst by single-cell RNA-seq
inferredcites →https://doi.org/10.1242/dev.134510openalex-snapshot
The human PRD-like homeobox gene LEUTX has a central role in embryo genome activation
inferredcites →https://doi.org/10.1242/dev.158501openalex-snapshot
Integrated analysis of single-cell embryo data yields a unified transcriptome signature for the human preimplantation epiblast
inferredcites →https://doi.org/10.1242/dev.159566openalex-snapshot
Cytoplasmic polyadenylation-mediated translational control of maternal mRNAs directs maternal-to-zygotic transition
inferredcites →https://doi.org/10.1242/dev.167833openalex-snapshot
Single cell transcriptome analysis of human, marmoset and mouse embryos reveals common and divergent features of preimplantation development
inferredcites →https://doi.org/10.1242/dev.177725openalex-snapshot
DUX is a non-essential synchronizer of zygotic genome activation
inferredcites →https://doi.org/10.12688/f1000research.9973.2openalex-snapshot
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests
inferredcites →https://doi.org/10.1371/journal.pgen.1003947openalex-snapshot
DUX4 Binding to Retroelements Creates Promoters That Are Active in FSHD Muscle and Testis
inferredcites →https://doi.org/10.1371/journal.pgen.1006380openalex-snapshot
Coordinately Co-opted Multiple Transposable Elements Constitute an Enhancer for wnt5a Expression in the Mammalian Secondary Palate
inferredcites →https://doi.org/10.1371/journal.pone.0013615openalex-snapshot
Functional Genomics of 5- to 8-Cell Stage Human Embryos by Blastomere Single-Cell cDNA Analysis
inferredcites →https://doi.org/10.1371/journal.pone.0162842openalex-snapshot
The 9aaTAD Transactivation Domains: From Gal4 to p53
inferredcites →https://doi.org/10.1371/journal.pone.0222814openalex-snapshot
Structural characterization of EGFR exon 19 deletion mutation using molecular dynamics simulation
inferredcites →https://doi.org/10.15252/embr.201642573openalex-snapshot
The E3 ubiquitin ligase RNF114 and TAB1 degradation are required for maternal‐to‐zygotic transition
inferredcites →https://doi.org/10.15252/embr.201846255openalex-snapshot
ChIP‐Atlas: a data‐mining suite powered by full integration of public ChIP‐seq data
inferredcites →https://doi.org/10.3791/50930openalex-snapshot
Mouse Genome Engineering Using Designer Nucleases
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.ceb.2021.12.004openalex-snapshot
Emerging mechanisms and dynamics of three-dimensional genome organisation at zygotic genome activation
inferred← citeshttps://doi.org/10.1016/j.stemcr.2022.06.002openalex-snapshot
Transient DUX4 expression in human embryonic stem cells induces blastomere-like expression program that is marked by SLC34A2
inferred← citeshttps://doi.org/10.1038/s41419-023-06257-2openalex-snapshot
Flavones provide resistance to DUX4-induced toxicity via an mTor-independent mechanism
inferred← citeshttps://doi.org/10.1038/s41588-021-00893-0openalex-snapshot
p53 convergently activates Dux/DUX4 in embryonic stem cells and in facioscapulohumeral muscular dystrophy cell models
inferred← citeshttps://doi.org/10.1101/2020.07.27.223420openalex-snapshot
A genome-wide CRISPR/Cas phenotypic screen for modulators of DUX4 cytotoxicity reveals screen complications
inferred← citeshttps://doi.org/10.1101/2022.04.07.486777openalex-snapshot
Resetting H3K4me3, H3K27ac, H3K9me3 and H3K27me3 during the maternal-to-zygotic transition and blastocyst lineage specification in bovine embryos
inferred← citeshttps://doi.org/10.1126/science.abo7923openalex-snapshot
Translatome and transcriptome co-profiling reveals a role of TPRXs in human zygotic genome activation
inferred← citeshttps://doi.org/10.1371/journal.pone.0263262openalex-snapshot
Considerations and practical implications of performing a phenotypic CRISPR/Cas survival screen
inferred← citeshttps://doi.org/10.33540/174openalex-snapshot
The DUX4 cytotoxic cascade, and CRISPR mitigation methods
inferred← citeshttps://doi.org/10.3390/cells10123322openalex-snapshot
DUX4 Role in Normal Physiology and in FSHD Muscular Dystrophy
inferred← citeshttps://doi.org/10.69622/28731794openalex-snapshot
Oxygen levels regulating embryonic genome activation
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