On the public citation graph
Horizontal Gene Transfer Constrains the Timing of Methanogen Evolution
0 signed · 71 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1016/0301-9268(80)90043-1openalex-snapshot
Microfossils from the Middle Proterozoic Dismal Lakes Groups, Arctic Canada
inferredcites →https://doi.org/10.1016/j.epsl.2013.11.001openalex-snapshot
Origin of methane in serpentinite-hosted hydrothermal systems: The CH4–H2–H2O hydrogen isotope systematics of the Hakuba Happo hot spring
inferredcites →https://doi.org/10.1016/j.ympev.2010.04.024openalex-snapshot
FASconCAT: Convenient handling of data matrices
inferredcites →https://doi.org/10.1016/j.ympev.2013.05.006openalex-snapshot
The effects of model choice and mitigating bias on the ribosomal tree of life
inferredcites →https://doi.org/10.1016/j.ympev.2014.05.032openalex-snapshot
The impact of calibration and clock-model choice on molecular estimates of divergence times
inferredcites →https://doi.org/10.1016/j.ympev.2015.02.002openalex-snapshot
Do missing data influence the accuracy of divergence-time estimation with BEAST?
inferredcites →https://doi.org/10.1016/s0022-2836(03)00150-5openalex-snapshot
Unique Amino Acid Composition of Proteins in Halophilic Bacteria
inferredcites →https://doi.org/10.1016/s0301-9268(96)00035-6openalex-snapshot
Microfossils in 2000 Ma old cherty stromatolites of the Franceville Group, Gabon
inferredcites →https://doi.org/10.1016/s0378-1119(01)00733-8openalex-snapshot
Prokaryotic structural maintenance of chromosomes (SMC) proteins: distribution, phylogeny, and comparison with MukBs and additional prokaryotic and eukaryotic coiled-coil proteins
inferredcites →https://doi.org/10.1017/s1473550415000579openalex-snapshot
Cyanobacterial evolution during the Precambrian
inferredcites →https://doi.org/10.1029/2001gc000286openalex-snapshot
Microbial fixation of methane carbon at 2.7 Ga: Was an anaerobic mechanism possible?
inferredcites →https://doi.org/10.1038/293289a0openalex-snapshot
Carbon isotope fractionation during microbial methane oxidation
inferredcites →https://doi.org/10.1038/nature04584openalex-snapshot
Evidence from fluid inclusions for microbial methanogenesis in the early Archaean era
inferredcites →https://doi.org/10.1038/nature07381openalex-snapshot
Reassessing the first appearance of eukaryotes and cyanobacteria
inferredcites →https://doi.org/10.1038/nature09649openalex-snapshot
Rapid evolutionary innovation during an Archaean genetic expansion
inferredcites →https://doi.org/10.1038/ngeo2075openalex-snapshot
Hadean age for a post-magma-ocean zircon confirmed by atom-probe tomography
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.170openalex-snapshot
Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.48openalex-snapshot
A new view of the tree of life
inferredcites →https://doi.org/10.1073/pnas.0600999103openalex-snapshot
The evolutionary diversification of cyanobacteria: Molecular–phylogenetic and paleontological perspectives
inferredcites →https://doi.org/10.1073/pnas.1202997109openalex-snapshot
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
inferredcites →https://doi.org/10.1073/pnas.1209927110openalex-snapshot
Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event
inferredcites →https://doi.org/10.1073/pnas.1305813110openalex-snapshot
Primary endosymbiosis events date to the later Proterozoic with cross-calibrated phylogenetic dating of duplicated ATPase proteins
inferredcites →https://doi.org/10.1073/pnas.1318106111openalex-snapshot
Methanogenic burst in the end-Permian carbon cycle
inferredcites →https://doi.org/10.1080/01490450303891openalex-snapshot
Estimated Minimal Divergence Times of the Major Bacterial and Archaeal Phyla
inferredcites →https://doi.org/10.1083/jcb.142.6.1595openalex-snapshot
The Symmetrical Structure of Structural Maintenance of Chromosomes (SMC) and MukB Proteins: Long, Antiparallel Coiled Coils, Folded at a Flexible Hinge
inferredcites →https://doi.org/10.1089/ast.2007.0197openalex-snapshot
A Revised, Hazy Methane Greenhouse for the Archean Earth
inferredcites →https://doi.org/10.1089/ast.2008.0248openalex-snapshot
Phylogenomic Dating—The Relative Antiquity of Archaeal Metabolic and Physiological Traits
inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot
ProtTest: selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/bioinformatics/btn445openalex-snapshot
Empirical profile mixture models for phylogenetic reconstruction
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/gbe/evx079openalex-snapshot
RelTime Rates Collapse to a Strict Clock When Estimating the Timeline of Animal Diversification
inferredcites →https://doi.org/10.1093/molbev/msh023openalex-snapshot
The Evolution of SMC Proteins: Phylogenetic Analysis and Structural Implications
inferredcites →https://doi.org/10.1093/molbev/msi221openalex-snapshot
The Presence of a Haloarchaeal Type Tyrosyl-tRNA Synthetase Marks the Opisthokonts as Monophyletic
inferredcites →https://doi.org/10.1093/molbev/msj024openalex-snapshot
Bayesian Estimation of Species Divergence Times Under a Molecular Clock Using Multiple Fossil Calibrations with Soft Bounds
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msn247openalex-snapshot
A Major Clade of Prokaryotes with Ancient Adaptations to Life on Land
inferredcites →https://doi.org/10.1093/molbev/mss112openalex-snapshot
Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
inferredcites →https://doi.org/10.1093/molbev/msw245openalex-snapshot
The Timetree of Prokaryotes: New Insights into Their Evolution and Speciation
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/nar/gkq443openalex-snapshot
GUIDANCE: a web server for assessing alignment confidence scores
inferredcites →https://doi.org/10.1093/nar/gks485openalex-snapshot
T-REX: a web server for inferring, validating and visualizing phylogenetic trees and networks
inferredcites →https://doi.org/10.1093/sysbio/syr107openalex-snapshot
Best Practices for Justifying Fossil Calibrations
inferredcites →https://doi.org/10.1093/sysbio/syr116openalex-snapshot
Testing the Impact of Calibration on Molecular Divergence Times Using a Fossil-Rich Group: The Case of Nothofagus (Fagales)
inferredcites →https://doi.org/10.1093/sysbio/syt003openalex-snapshot
Lateral Gene Transfer from the Dead
inferredcites →https://doi.org/10.1093/sysbio/syt022openalex-snapshot
PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment
inferredcites →https://doi.org/10.1093/sysbio/syv033openalex-snapshot
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic Inference
inferredcites →https://doi.org/10.1098/rsbl.2011.0710openalex-snapshot
Exploring uncertainty in the calibration of the molecular clock
inferredcites →https://doi.org/10.1111/bij.12710openalex-snapshot
To what extent do new fossil discoveries change our understanding of clade evolution? A cautionary tale from burying beetles (Coleoptera:Nicrophorus)
inferredcites →https://doi.org/10.1111/gbi.12200openalex-snapshot
Crown group Oxyphotobacteria postdate the rise of oxygen
inferredcites →https://doi.org/10.1111/j.1472-4669.2009.00219.xopenalex-snapshot
Not so old Archaea – the antiquity of biogeochemical processes in the archaeal domain of life
inferredcites →https://doi.org/10.1111/j.1758-2229.2009.00074.xopenalex-snapshot
Substantial 13 C/ 12 C and D/H fractionation during anaerobic oxidation of methane by marine consortia enriched in vitro
inferredcites →https://doi.org/10.1111/pala.12178openalex-snapshot
Cyanobacteria and the Great Oxidation Event: evidence from genes and fossils
inferredcites →https://doi.org/10.1111/pala.12211openalex-snapshot
Proterozoic photosynthesis – a critical review
inferredcites →https://doi.org/10.1126/sciadv.1600134openalex-snapshot
Rapid oxygenation of Earth’s atmosphere 2.33 billion years ago
inferredcites →https://doi.org/10.1126/science.aac7745openalex-snapshot
Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics
inferredcites →https://doi.org/10.1186/1471-2148-12-226openalex-snapshot
Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archaea
inferredcites →https://doi.org/10.1186/1471-2148-4-44openalex-snapshot
A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land
inferredcites →https://doi.org/10.1186/1471-2164-8-86openalex-snapshot
Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis
inferredcites →https://doi.org/10.1186/gb-2008-9-4-r70openalex-snapshot
Molecular signature of hypersaline adaptation: insights from genome and proteome composition of halophilic prokaryotes
inferredcites →https://doi.org/10.1371/currents.tol.099161de5eabdee073fd3d21a44518dcopenalex-snapshot
Arbor: Comparative Analysis Workflows for the Tree of Life
inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot
Relaxed Phylogenetics and Dating with Confidence
inferredcites →https://doi.org/10.1371/journal.pgen.1006810openalex-snapshot
Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes
inferredcites →https://doi.org/10.1371/journal.pone.0148228openalex-snapshot
Consequences of Secondary Calibrations on Divergence Time Estimates
inferredcites →https://doi.org/10.1371/journal.pone.0162539openalex-snapshot
A Comprehensive Study of Cyanobacterial Morphological and Ecological Evolutionary Dynamics through Deep Geologic Time
inferredcites →https://doi.org/10.2138/rmg.2005.59.10openalex-snapshot
Building the Biomarker Tree of Life
inferredcites →https://doi.org/10.2307/1542970openalex-snapshot
Horizontal Gene Transfer: Pitfalls and Promises
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1038/s41467-023-39917-0openalex-snapshot
Methane formation driven by light and heat prior to the origin of life and beyond
inferred← citeshttps://doi.org/10.1038/s41559-018-0525-3openalex-snapshot
Gene transfers can date the tree of life
inferred← citeshttps://doi.org/10.1111/gbi.12273openalex-snapshot
Dating phototrophic microbial lineages with reticulate gene histories
inferred← citeshttps://doi.org/10.70675/ac7907fbz1356z461azb759z5770743b3e29openalex-snapshot
Towards a chronology of life using Lateral Gene Transfers
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.