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Bayesian Estimation of Species Divergence Times Under a Molecular Clock Using Multiple Fossil Calibrations with Soft Bounds
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Evolution of Protein Molecules
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Testing a Molecular Clock without an Outgroup: Derivations of Induced Priors on Branch-Length Restrictions in a Bayesian Framework
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Encyclopedia of Human Evolution and Prehistory
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Molecular paleobiology — Progress and perspectives
inferred← citeshttps://doi.org/10.1016/j.pld.2026.06.006openalex-snapshot
Topographic fragmentation shapes maternal lineage divergence and plastome variation in the seed dispersal limited alpine herb Rhodiola bupleuroides
inferred← citeshttps://doi.org/10.1016/j.tig.2015.08.001openalex-snapshot
Dating Tips for Divergence-Time Estimation
inferred← citeshttps://doi.org/10.1016/j.tree.2006.11.013openalex-snapshot
Dates from the molecular clock: how wrong can we be?
inferred← citeshttps://doi.org/10.1016/j.tree.2007.05.005openalex-snapshot
Rocks and clocks: calibrating the Tree of Life using fossils and molecules
inferred← citeshttps://doi.org/10.1016/j.tree.2013.07.007openalex-snapshot
Critiquing blind dating: the dangers of over-confident date estimates in comparative genomics
inferred← citeshttps://doi.org/10.1016/j.tree.2014.07.004openalex-snapshot
The changing face of the molecular evolutionary clock
inferred← citeshttps://doi.org/10.1016/j.ygeno.2018.07.015openalex-snapshot
Molecular footprints of inshore aquatic adaptation in Indo-Pacific humpback dolphin (Sousa chinensis)
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.04.017openalex-snapshot
A chromosome-level genome assembly of the yellowfin seabream (Acanthopagrus latus; Hottuyn, 1782) provides insights into its osmoregulation and sex reversal
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.06.018openalex-snapshot
Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous–Tertiary boundary
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.10.024openalex-snapshot
Phylogeny, evolutionary history, and biogeography of Oriental–Australian rear-fanged water snakes (Colubroidea: Homalopsidae) inferred from mitochondrial and nuclear DNA sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.01.002openalex-snapshot
A timescale and phylogeny for “Bandicoots” (Peramelemorphia: Marsupialia) based on sequences for five nuclear genes
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.08.002openalex-snapshot
Molecular dating of the diversification of Phyllostominae bats based on nuclear and mitochondrial DNA sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.08.019openalex-snapshot
A nesting of vipers: Phylogeny and historical biogeography of the Viperidae (Squamata: Serpentes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.08.020openalex-snapshot
Phylogeny and biogeography of the family Salamandridae (Amphibia: Caudata) inferred from complete mitochondrial genomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.09.001openalex-snapshot
Cape diversification and repeated out-of-southern-Africa dispersal in paper daisies (Asteraceae–Gnaphalieae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.10.023openalex-snapshot
Multigene analysis of phylogenetic relationships and divergence times of primate sucking lice (Phthiraptera: Anoplura)
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.02.008openalex-snapshot
Neogene diversification and taxonomic stability in the snake tribe Lampropeltini (Serpentes: Colubridae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.07.010openalex-snapshot
Higher-level salamander relationships and divergence dates inferred from complete mitochondrial genomes
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.11.006openalex-snapshot
Molecular phylogenetic relationships and the evolution of the placenta in Poecilia (Micropoecilia) (Poeciliidae: Cyprinodontiformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.020openalex-snapshot
Divergence times and colonization of the Canary Islands by Gallotia lizards
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.027openalex-snapshot
A reappraisal of the evolution of Asian snakehead fishes (Pisces, Channidae) using molecular data from multiple genes and fossil calibration
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.04.019openalex-snapshot
A multilocus timescale for the origin of extant amphibians
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.11.005openalex-snapshot
Unresolved molecular phylogenies of gibbons and siamangs (Family: Hylobatidae) based on mitochondrial, Y-linked, and X-linked loci indicate a rapid Miocene radiation or sudden vicariance event
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.01.014openalex-snapshot
Molecular phylogenetic relationships and the coevolution of placentotrophy and superfetation in Poecilia (Poeciliidae: Cyprinodontiformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.03.014openalex-snapshot
Phylogenetics, species boundaries and timing of resource tracking in a highly specialized group of seed beetles (Coleoptera: Chrysomelidae: Bruchinae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.06.008openalex-snapshot
Bayesian relaxed clock estimation of divergence times in foraminifera
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.07.008openalex-snapshot
Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.10.008openalex-snapshot
Estimation of divergence times in cnidarian evolution based on mitochondrial protein-coding genes and the fossil record
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.11.005openalex-snapshot
Phylogenetic relationships of rock-wallabies, Petrogale (Marsupialia: Macropodidae) and their biogeographic history within Australia
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.05.006openalex-snapshot
A molecular phylogeny for the Tribe Dacini (Diptera: Tephritidae): Systematic and biogeographic implications
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.05.031openalex-snapshot
Molecular phylogeny and dating of Asteliaceae (Asparagales): Astelia s.l. evolution provides insight into the Oligocene history of New Zealand
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.05.036openalex-snapshot
Biome specificity of distinct genetic lineages within the four-striped mouse Rhabdomys pumilio (Rodentia: Muridae) from southern Africa with implications for taxonomy
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.06.028openalex-snapshot
Acrobat ants go global – Origin, evolution and systematics of the genus Crematogaster (Hymenoptera: Formicidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.08.018openalex-snapshot
Estimating divergence dates and evaluating dating methods using phylogenomic and mitochondrial data in squamate reptiles
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.08.024openalex-snapshot
The lemur revolution starts now: The genomic coming of age for a non-model organism
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.09.010openalex-snapshot
Phylogenetic relationships and biogeography of Pseudoxiphophorus (Teleostei: Poeciliidae) based on mitochondrial and nuclear genes
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.11.003openalex-snapshot
Combining multiple autosomal introns for studying shallow phylogeny and taxonomy of Laurasiatherian mammals: Application to the tribe Bovini (Cetartiodactyla, Bovidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.11.027openalex-snapshot
Molecular systematics and historical biogeography of tree boas (Corallus spp.)
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.02.008openalex-snapshot
Molecular dating of phylogenies by likelihood methods: A comparison of models and a new information criterion
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.04.026openalex-snapshot
Evolutionary events in Lilium (including Nomocharis, Liliaceae) are temporally correlated with orogenies of the Q–T plateau and the Hengduan Mountains
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.04.029openalex-snapshot
Molecular phylogeny and historical biogeography of West Indian boid snakes (Chilabothrus)
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.10.016openalex-snapshot
The origin of the early differentiation of Ivies (Hedera L.) and the radiation of the Asian Palmate group (Araliaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.01.009openalex-snapshot
Life-history evolution and mitogenomic phylogeny of caecilian amphibians
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.05.021openalex-snapshot
Uncovering sibling species in Radiolaria: Evidence for ecological partitioning in a marine planktonic protist
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.05.032openalex-snapshot
The impact of calibration and clock-model choice on molecular estimates of divergence times
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.06.001openalex-snapshot
Molecular systematics and biogeography of Logania R.Br. (Loganiaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.11.006openalex-snapshot
Was the exposed continental shelf a long-distance colonization route in the ice age? The Southeast Asia origin of Hainan and Taiwan partridges
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.03.018openalex-snapshot
A Paleogene origin for crown passerines and the diversification of the Oscines in the New World
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.04.027openalex-snapshot
Fleas (Siphonaptera) are Cretaceous, and evolved with Theria
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.07.010openalex-snapshot
Dating the origin of hepatitis B virus reveals higher substitution rate and adaptation on the branch leading to F/H genotypes
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.09.013openalex-snapshot
Biogeography of the Malagasy Celastraceae: Multiple independent origins followed by widespread dispersal of genera from Madagascar
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.10.028openalex-snapshot
A time-calibrated phylogeny of southern hemisphere stoneflies: Testing for Gondwanan origins
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.01.003openalex-snapshot
Nuclear introns outperform mitochondrial DNA in inter-specific phylogenetic reconstruction: Lessons from horseshoe bats (Rhinolophidae: Chiroptera)
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.07.007openalex-snapshot
Phylogeny and temporal diversification of the New World pond turtles (Emydidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2016.12.001openalex-snapshot
The phylogeny of Heliconia (Heliconiaceae) and the evolution of floral presentation
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.01.005openalex-snapshot
Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.03.017openalex-snapshot
Using phylogenomics to understand the link between biogeographic origins and regional diversification in ratsnakes
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.05.008openalex-snapshot
Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.07.005openalex-snapshot
Comparison of different strategies for using fossil calibrations to generate the time prior in Bayesian molecular clock dating
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.07.006openalex-snapshot
Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines)
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.11.006openalex-snapshot
Diversification dynamics and transoceanic Eurasian-Australian disjunction in the genus Picris (Compositae) induced by the interplay of shifts in intrinsic/extrinsic traits and paleoclimatic oscillations
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.01.006openalex-snapshot
A biogeographic and ecological perspective to the evolution of reproductive behaviour in the family Salamandridae
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.02.019openalex-snapshot
West meets East: How do rainforest beetles become circum-Pacific? Evolutionary origin of Callipogon relictus and allied species (Cerambycidae: Prioninae) in the New and Old Worlds
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.05.018openalex-snapshot
Plastome sequences and exploration of tree-space help to resolve the phylogeny of riceflowers (Thymelaeaceae: Pimelea)
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.05.030openalex-snapshot
Phylogenetic analysis of the tree-kangaroos (Dendrolagus) reveals multiple divergent lineages within New Guinea
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.12.021openalex-snapshot
Contrasting patterns of diversification between Amazonian and Atlantic forest clades of Neotropical lianas (Amphilophium, Bignonieae) inferred from plastid genomic data
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.02.013openalex-snapshot
Reconstructing evolution at the community level: A case study on Mediterranean amphibians
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.03.007openalex-snapshot
Digging for the spiny rat and hutia phylogeny using a gene capture approach, with the description of a new mammal subfamily
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106521openalex-snapshot
A multigene timescale and diversification dynamics of Ciliophora evolution
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106550openalex-snapshot
Diversification of the gut fungi Smittium and allies (Harpellales) co-occurred with the origin of complete metamorphosis of their symbiotic insect hosts (lower Diptera)
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107259openalex-snapshot
An updated phylogenetic and biogeographic analysis based on genome skimming data reveals convergent evolution of shrubby habit in Clematis in the Pliocene and Pleistocene
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107310openalex-snapshot
Multiple independent losses of cell mouth in phylogenetically distant endosymbiotic lineages of oligohymenophorean ciliates: A lesson from Clausilocola
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107311openalex-snapshot
A comprehensive phylogeny of dwarf geckos of the genus Lygodactylus, with insights into their systematics and morphological variation
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107323openalex-snapshot
Deciphering reticulate evolution of the largest group of polyploid vertebrates, the subfamily cyprininae (Teleostei: Cypriniformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107481openalex-snapshot
A comprehensive phylogeny helps clarify the evolutionary history of host breadth and lure response in the Australian Dacini fruit flies (Diptera: Tephritidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107582openalex-snapshot
Systematics of the New World bats Eptesicus and Histiotus suggest trans-marine dispersal followed by Neotropical cryptic diversification
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107620openalex-snapshot
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107621openalex-snapshot
Re-evaluating and dating myriapod diversification with phylotranscriptomics under a regime of dense taxon sampling
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107712openalex-snapshot
A complete genus-level phylogeny reveals the Cretaceous biogeographic diversification of the poppy family
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107728openalex-snapshot
Phylogenomic analyses reveal incongruences between divergence times and fossil records of freshwater snails in East Asia
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107773openalex-snapshot
Phylogenomics reconciles molecular data with the rich fossil record on the origin of living turtles
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107785openalex-snapshot
Ultraconserved elements improve resolution of marmot phylogeny and offer insights into biogeographic history
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107825openalex-snapshot
Biogeography and evolution of social parasitism in Australian Myrmecia bulldog ants revealed by phylogenomics
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