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De novo assembly and annotation of the eastern fence lizard ( Sceloporus undulatus ) transcriptome

https://doi.org/10.1101/136069
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ar.22524openalex-snapshot
The Gross Anatomy of the Original and Regenerated Tail in the Green Anole ( Anolis carolinensis )
inferredcites →https://doi.org/10.1002/ar.22537openalex-snapshot
A Histological Comparison of the Original and Regenerated Tail in the Green Anole, Anolis carolinensis
inferredcites →https://doi.org/10.1002/jmor.10860openalex-snapshot
Placental specializations of the mountain spiny lizard Sceloporus jarrovi
inferredcites →https://doi.org/10.1002/jmor.10925openalex-snapshot
Scanning electron microscopy of the placental interface in the viviparous lizard Sceloporus jarrovi (Squamata: Phrynosomatidae)
inferredcites →https://doi.org/10.1007/s00442-006-0583-0openalex-snapshot
Incubation temperature and phenotypic traits of Sceloporus undulatus: implications for the northern limits of distribution
inferredcites →https://doi.org/10.1016/s0306-4565(01)00084-5openalex-snapshot
Is physiological performance optimized by thermoregulatory behavior?: a case study of the eastern fence lizard, Sceloporus undulatus
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1073/pnas.1419659112openalex-snapshot
Rapid molecular evolution across amniotes of the IIS/TOR network
inferredcites →https://doi.org/10.1086/285538openalex-snapshot
Temperature, Activity, and Lizard Life Histories
inferredcites →https://doi.org/10.1086/319321openalex-snapshot
Energy Budgets, Growth Rates, and Thermal Constraints: Toward an Integrative Approach to the Study of Life‐History Variation
inferredcites →https://doi.org/10.1086/425222openalex-snapshot
Bergmann’s Clines in Ectotherms: Illustrating a Life‐History Perspective with Sceloporine Lizards
inferredcites →https://doi.org/10.1086/507880openalex-snapshot
Direct and Indirect Effects of Environmental Temperature on the Evolution of Reproductive Strategies: An Information‐Theoretic Approach
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/conphys/cot006openalex-snapshot
Overcoming the challenges of studying conservation physiology in large whales: a review of available methods
inferredcites →https://doi.org/10.1093/gbe/evw229openalex-snapshot
Reptile Pregnancy Is Underpinned by Complex Changes in Uterine Gene Expression: A Comparative Analysis of the Uterine Transcriptome in Viviparous and Oviparous Lizards
inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot
The Pfam protein families database: towards a more sustainable future
inferredcites →https://doi.org/10.1093/nar/gkw1099openalex-snapshot
UniProt: the universal protein knowledgebase
inferredcites →https://doi.org/10.1093/sysbio/syp057openalex-snapshot
Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)
inferredcites →https://doi.org/10.1098/rspb.2015.0837openalex-snapshot
Resolving the life cycle alters expected impacts of climate change
inferredcites →https://doi.org/10.1111/1365-2435.12406openalex-snapshot
Thermoregulatory behaviour limits local adaptation of thermal niches and confers sensitivity to climate change
inferredcites →https://doi.org/10.1111/evo.12130openalex-snapshot
EVOLUTION OF VIVIPARITY: A PHYLOGENETIC TEST OF THE COLD-CLIMATE HYPOTHESIS IN PHRYNOSOMATID LIZARDS
inferredcites →https://doi.org/10.1111/gcb.13476openalex-snapshot
Lizards fail to plastically adjust nesting behavior or thermal tolerance as needed to buffer populations from climate warming
inferredcites →https://doi.org/10.1142/9781848165632_0019openalex-snapshot
A NEW GENERATION OF HOMOLOGY SEARCH TOOLS BASED ON PROBABILISTIC INFERENCE
inferredcites →https://doi.org/10.1186/1471-2105-10-1openalex-snapshot
Regularized gene selection in cancer microarray meta-analysis
inferredcites →https://doi.org/10.1186/1471-2164-14-49openalex-snapshot
Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes
inferredcites →https://doi.org/10.1186/s12864-016-2923-8openalex-snapshot
Comparative performance of transcriptome assembly methods for non-model organisms
inferredcites →https://doi.org/10.1515/9781400863945.31openalex-snapshot
Chapter 2. Understanding Geographic Life-History Variation in Lizards
inferredcites →https://doi.org/10.1890/0012-9658(2000)081[2957:teoteo]2.0.co;2openalex-snapshot
THERMAL EFFECTS ON THE ENERGETICS OF LIZARD EMBRYOS: IMPLICATIONS FOR HATCHLING PHENOTYPES
inferredcites →https://doi.org/10.2307/1934772openalex-snapshot
Sceloporus Undulatus: A Study of the Intraspecific Comparative Demography of a Lizard
inferredcites →https://doi.org/10.2307/2679833openalex-snapshot
Thermal and Physiological Constraints on Energy Assimilation in a Widespread Lizard (Sceloporus undulatus)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1186/s12864-021-08178-wopenalex-snapshot
Inferring the genetic responses to acute drought stress across an ecological gradient
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