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Role of competition in the strain structure of rotavirus under invasion and reassortment

https://doi.org/10.1101/137661
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Rotavirus G and P types in children with acute diarrhea in Blantyre, Malawi, from 1997 to 1998: Predominance of novel P[6]G8 Strains
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A Rotavirus Vaccine for Prevention of Severe Diarrhoea of Infants and Young Children: Development, Utilization and Withdrawal
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Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
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Molecular and Serologic Characterization of Novel Serotype G8 Human Rotavirus Strains Detected in Blantyre, Malawi
inferredcites →https://doi.org/10.1007/s00705-007-0028-zopenalex-snapshot
Apparent extinction of non-G2 rotavirus strains from circulation in Recife, Brazil, after the introduction of rotavirus vaccine
inferredcites →https://doi.org/10.1016/b978-012220360-2/50015-5openalex-snapshot
Antigenic Variation in Influenza Viruses
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The evolution and emergence of hantaviruses
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Evolutionary analysis of human H2N2 and early H3N2 influenza viruses: evidence for genetic divergence and multiple reassortment among H2N2 and/or H3N2 viruses
inferredcites →https://doi.org/10.1016/j.ijid.2008.03.022openalex-snapshot
Temporal changes of rotavirus strain distribution in a city in the northwest of China, 1996–2005
inferredcites →https://doi.org/10.1016/j.jcv.2004.09.020openalex-snapshot
Predominance of rotavirus G9 genotype in children hospitalized for rotavirus gastroenteritis in Belgium during 1999–2003
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A simple model of group selection that cannot be analyzed with inclusive fitness
inferredcites →https://doi.org/10.1016/j.meegid.2011.05.023openalex-snapshot
Intra-genotypic diversity of archival G4P[8] human rotaviruses from Washington, DC
inferredcites →https://doi.org/10.1016/j.meegid.2014.03.001openalex-snapshot
Data mining from a 27-years rotavirus surveillance in Palermo, Italy
inferredcites →https://doi.org/10.1016/j.meegid.2015.03.035openalex-snapshot
Intrasegmental recombination does not contribute to the long-term evolution of group A rotavirus
inferredcites →https://doi.org/10.1016/s0022-3476(97)80038-8openalex-snapshot
Rotavirus infection in infants as protection against subsequent infections
inferredcites →https://doi.org/10.1016/s1473-3099(14)70832-1openalex-snapshot
Distribution of rotavirus strains and strain-specific effectiveness of the rotavirus vaccine after its introduction: a systematic review and meta-analysis
inferredcites →https://doi.org/10.1038/ni.3684openalex-snapshot
Defining the antibody cross-reactome directed against the influenza virus surface glycoproteins
inferredcites →https://doi.org/10.1038/nm0496-437openalex-snapshot
The maintenance of strain structure in populations of recombining infectious agents
inferredcites →https://doi.org/10.1038/nrmicro1284openalex-snapshot
Host and virus determinants of picornavirus pathogenesis and tropism
inferredcites →https://doi.org/10.1038/srep39642openalex-snapshot
Population cycles and species diversity in dynamic Kill-the-Winner model of microbial ecosystems
inferredcites →https://doi.org/10.1056/nejm199610033351404openalex-snapshot
Rotavirus Infection in Infants as Protection against Subsequent Infections
inferredcites →https://doi.org/10.1056/nejmoa1006261openalex-snapshot
Protective Effect of Natural Rotavirus Infection in an Indian Birth Cohort
inferredcites →https://doi.org/10.1073/pnas.0508024103openalex-snapshot
Self-organized similarity, the evolutionary emergence of groups of similar species
inferredcites →https://doi.org/10.1073/pnas.1102445108openalex-snapshot
Role of stochastic processes in maintaining discrete strain structure in antigenically diverse pathogen populations
inferredcites →https://doi.org/10.1086/282505openalex-snapshot
The Limiting Similarity, Convergence, and Divergence of Coexisting Species
inferredcites →https://doi.org/10.1086/283708openalex-snapshot
Selection of Intermediate Rates of Increase in Parasite-Host Systems
inferredcites →https://doi.org/10.1086/653549openalex-snapshot
Influence of Potential Protective Mechanisms on the Development of Live Rotavirus Vaccines
inferredcites →https://doi.org/10.1093/infdis/174.supplement_1.s59openalex-snapshot
Host Factors Associated With Protection Against Rotavirus Disease: The Skies Are Clearing
inferredcites →https://doi.org/10.1093/molbev/msq137openalex-snapshot
Phylodynamic Analyses of Rotavirus Genotypes G9 and G12 Underscore Their Potential for Swift Global Spread
inferredcites →https://doi.org/10.1093/oso/9780199211128.001.0001openalex-snapshot
The Evolution and Emergence of RNA Viruses
inferredcites →https://doi.org/10.1097/00006454-199301000-00012openalex-snapshot
Outbreak of leptospirosis associated with swimming
inferredcites →https://doi.org/10.1097/00006454-199301000-00013openalex-snapshot
Cohort study of rotavirus serotype patterns in symptomatic and asymptomatic infections in Mexican children
inferredcites →https://doi.org/10.1097/inf.0b013e3181fefd90openalex-snapshot
Distribution of Rotavirus Genotypes After Introduction of Rotavirus Vaccines, Rotarix® and RotaTeq®, into the National Immunization Program of Australia
inferredcites →https://doi.org/10.1098/rsif.2007.0229openalex-snapshot
Patterns of antigenic diversity and the mechanisms that maintain them
inferredcites →https://doi.org/10.1099/vir.0.2008/003913-0openalex-snapshot
The origin and phylogeography of dog rabies virus
inferredcites →https://doi.org/10.1101/sqb.1957.022.01.039openalex-snapshot
Concluding Remarks
inferredcites →https://doi.org/10.1111/j.1461-0248.2009.01314.xopenalex-snapshot
The merging of community ecology and phylogenetic biology
inferredcites →https://doi.org/10.1111/j.1558-5646.1996.tb03560.xopenalex-snapshot
THE EVOLUTION OF VIRULENCE IN PATHOGENS WITH VERTICAL AND HORIZONTAL TRANSMISSION
inferredcites →https://doi.org/10.1111/nyas.12493openalex-snapshot
Pathogen evolution and the immunological niche
inferredcites →https://doi.org/10.1126/science.1090727openalex-snapshot
Unifying the Epidemiological and Evolutionary Dynamics of Pathogens
inferredcites →https://doi.org/10.1126/science.1132745openalex-snapshot
Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans
inferredcites →https://doi.org/10.1126/science.1172330openalex-snapshot
Demographic Variability, Vaccination, and the Spatiotemporal Dynamics of Rotavirus Epidemics
inferredcites →https://doi.org/10.1128/jvi.00340-06openalex-snapshot
Heterogeneity and Temporal Dynamics of Evolution of G1 Human Rotaviruses in a Settled Population
inferredcites →https://doi.org/10.1128/jvi.01105-12openalex-snapshot
Diversity and Relationships of Cocirculating Modern Human Rotaviruses Revealed Using Large-Scale Comparative Genomics
inferredcites →https://doi.org/10.1128/jvi.01402-08openalex-snapshot
Group A Human Rotavirus Genomics: Evidence that Gene Constellations Are Influenced by Viral Protein Interactions
inferredcites →https://doi.org/10.1128/jvi.01622-06openalex-snapshot
Evolutionary History and Global Spread of the Emerging G12 Human Rotaviruses
inferredcites →https://doi.org/10.1128/jvi.02257-07openalex-snapshot
Full Genome-Based Classification of Rotaviruses Reveals a Common Origin between Human Wa-Like and Porcine Rotavirus Strains and Human DS-1-Like and Bovine Rotavirus Strains
inferredcites →https://doi.org/10.1128/jvi.03146-14openalex-snapshot
Influenza Virus Reservoirs and Intermediate Hosts: Dogs, Horses, and New Possibilities for Influenza Virus Exposure of Humans
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110411-160411openalex-snapshot
Rethinking Community Assembly through the Lens of Coexistence Theory
inferredcites →https://doi.org/10.1146/annurev.ecolsys.31.1.343openalex-snapshot
Mechanisms of Maintenance of Species Diversity
inferredcites →https://doi.org/10.1146/annurev.es.14.110183.002043openalex-snapshot
The Theory of Limiting Similarity
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/1471-2180-9-238openalex-snapshot
RotaC: A web-based tool for the complete genome classification of group A rotaviruses
inferredcites →https://doi.org/10.1186/1471-2334-13-320openalex-snapshot
Changing profile of rotavirus genotypes in Bangladesh, 2006–2012
inferredcites →https://doi.org/10.1186/1741-7007-10-38openalex-snapshot
Canalization of the evolutionary trajectory of the human influenza virus
inferredcites →https://doi.org/10.1371/journal.pgen.1001301openalex-snapshot
Prevalence of Epistasis in the Evolution of Influenza A Surface Proteins
inferredcites →https://doi.org/10.1371/journal.ppat.1000634openalex-snapshot
Evolutionary Dynamics of Human Rotaviruses: Balancing Reassortment with Preferred Genome Constellations
inferredcites →https://doi.org/10.1371/journal.ppat.1003104openalex-snapshot
The Roles of Competition and Mutation in Shaping Antigenic and Genetic Diversity in Influenza
inferredcites →https://doi.org/10.5962/bhl.title.4489openalex-snapshot
The struggle for existence
inferredcites →https://doi.org/10.7554/elife.00093openalex-snapshot
Population structuring of multi-copy, antigen-encoding genes in Plasmodium falciparum
inferredcites →https://doi.org/10.7554/elife.01914openalex-snapshot
Integrating influenza antigenic dynamics with molecular evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1012619openalex-snapshot
The evolutionary cost of homophily: Social stratification facilitates stable variant coexistence and increased rates of evolution in host-associated pathogens
inferred← citeshttps://doi.org/10.30895/2221-996x-2019-19-2-81-87openalex-snapshot
Rotavirus Epidemiology and Vaccination Tactics
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