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Integrating influenza antigenic dynamics with molecular evolution
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Molecular characterization of influenza B viruses circulating in northern Italy during the 2001–2002 epidemic season
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Genetic diversity of influenza B virus: The frequent reassortment and cocirculation of the genetically distinct reassortant viruses in a community
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Antigenic characterisation of influenza B virus with A new microneutralisation assay: Comparison to haemagglutination and sequence analysis
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Changes in the hemagglutinins and neuraminidases of human influenza B viruses isolated in Italy during the 2001–02, 2002–03, and 2003–04 seasons
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Reappearance and Global Spread of Variants of Influenza B/Victoria/2/87 Lineage Viruses in the 2000–2001 and 2001–2002 Seasons
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Handbook of Brownian Motion — Facts and Formulae
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Handbook of Brownian Motion - Facts and Formulae
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Concurrent antigenic analysis of recent epidemic influenza A and B viruses and quantitation of antibodies in population serosurveys in Italy
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Molecular analysis of isolates from influenza B outbreaks in the U.S. and Nepal, 2005
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Evolutionary characteristics of influenza B virus since its first isolation in 1940: dynamic circulation of deletion and insertion mechanism
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Antigenic and genetic analyses of influenza B viruses\\ isolated in Lusaka, Zambia in 1999
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Antigenic similarity of influenza A(H1N1) viruses from epidemics in 1977–1978 to “Scandinavian” strains isolated in epidemics of 1950–1951
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Genetic relatedness of some 1978–1979 influenza H1N1 strains to 1953 H1N1 strain
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Analysis of antigenic drift in recently isolated influenza A (H1N1) viruses using monoclonal antibody preparations
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The antigenicity and evolution of influenza H1 haemagglutinin, from 1950–1957 and 1977–1983: Two pathways from one gene
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Cocirculation of two distinct evolutionary lineages of influenza type B virus since 1983
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Epidemiological, antigenic and genetic characteristics of seasonal influenza A(H1N1), A(H3N2) and B influenza viruses: Basis for the WHO recommendation on the composition of influenza vaccines for use in the 2009–2010 Northern Hemisphere season
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WHO recommendations for the viruses to be used in the 2012 Southern Hemisphere Influenza Vaccine: Epidemiology, antigenic and genetic characteristics of influenza A(H1N1)pdm09, A(H3N2) and B influenza viruses collected from February to September 2011
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Reassortment and evolution of current human influenza A and B viruses
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Characterization of the epidemic influenza B viruses isolated during 2004–2005 season in Taiwan
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Escape mutants of pandemic influenza A/H1N1 2009 virus: Variations in antigenic specificity and receptor affinity of the hemagglutinin
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Traveling waves in a model of influenza A drift
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Influenza in the United Kingdom 1982–85
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Influenza in the United Kingdom 1977–1981
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The return of the historic influenza A H1N1 virus and its impact on the population of the United Kingdom
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Comparison of the HA genes of type B influenza viruses in herald waves and later epidemic seasons
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Evolution of Surface and Nonstructural-1 Genes of Influenza B Viruses Isolated in the Province of Québec, Canada, during the 1998–2001 Period
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Structural identification of the antibody-binding sites of Hong Kong influenza haemagglutinin and their involvement in antigenic variation
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A global initiative on sharing avian flu data
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Funders should allow for cost of publication
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Ecological and immunological determinants of influenza evolution
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Unifying the spatial epidemiology and molecular evolution of emerging epidemics
inferredcites →https://doi.org/10.1073/pnas.1218841110openalex-snapshot
Evolution of the receptor binding properties of the influenza A(H3N2) hemagglutinin
inferredcites →https://doi.org/10.1073/pnas.252512799openalex-snapshot
Dynamics and selection of many-strain pathogens
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Long term trends in the evolution of H(3) HA1 human influenza type A
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Bayesian Estimation of Ancestral Character States on Phylogenies
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STUDIES OF ANTIGENIC DIFFERENCES AMONG STRAINS OF INFLUENZA A BY MEANS OF RED CELL AGGLUTINATION
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A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection
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Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences
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Phylogeography Takes a Relaxed Random Walk in Continuous Space and Time
inferredcites →https://doi.org/10.1093/molbev/msr044openalex-snapshot
The Genomic Rate of Molecular Adaptation of the Human Influenza A Virus
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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The evolution of human influenza viruses
inferredcites →https://doi.org/10.1099/vir.0.83184-0openalex-snapshot
Antigenic drift in the evolution of H1N1 influenza A viruses resulting from deletion of a single amino acid in the haemagglutinin gene
inferredcites →https://doi.org/10.1111/j.1750-2659.2011.00331.xopenalex-snapshot
Influenza Research Database: an integrated bioinformatics resource for influenza research and surveillance
inferredcites →https://doi.org/10.1126/science.1097211openalex-snapshot
Mapping the Antigenic and Genetic Evolution of Influenza Virus
inferredcites →https://doi.org/10.1126/science.1154137openalex-snapshot
The Global Circulation of Seasonal Influenza A (H3N2) Viruses
inferredcites →https://doi.org/10.1126/science.1178258openalex-snapshot
Hemagglutinin Receptor Binding Avidity Drives Influenza A Virus Antigenic Drift
inferredcites →https://doi.org/10.1126/science.1187816openalex-snapshot
Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance
inferredcites →https://doi.org/10.1126/science.1244730openalex-snapshot
Substitutions Near the Receptor Binding Site Determine Major Antigenic Change During Influenza Virus Evolution
inferredcites →https://doi.org/10.1128/iai.32.1.287-294.1981openalex-snapshot
Antigenic and genomic analyses of influenza A(H1N1) viruses from different regions of the world, February 1978 to March 1980
inferredcites →https://doi.org/10.1128/jcm.40.8.3068-3070.2002openalex-snapshot
Emergence of an Influenza B Virus with Antigenic Change
inferredcites →https://doi.org/10.1128/jvi.00458-10openalex-snapshot
Neuraminidase Receptor Binding Variants of Human Influenza A(H3N2) Viruses Resulting from Substitution of Aspartic Acid 151 in the Catalytic Site: a Role in Virus Attachment?
inferredcites →https://doi.org/10.1128/jvi.01023-13openalex-snapshot
Single Hemagglutinin Mutations That Alter both Antigenicity and Receptor Binding Avidity Influence Influenza Virus Antigenic Clustering
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Evolutionary pattern of the hemagglutinin gene of influenza B viruses isolated in Japan: cocirculating lineages in the same epidemic season
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Antigenic Drift in the Influenza A Virus (H3N2) Nucleoprotein and Escape from Recognition by Cytotoxic T Lymphocytes
inferredcites →https://doi.org/10.1128/jvi.78.1.240-249.2004openalex-snapshot
Structural Differences among Hemagglutinins of Influenza A Virus Subtypes Are Reflected in Their Antigenic Architecture: Analysis of H9 Escape Mutants
inferredcites →https://doi.org/10.1186/1471-2148-11-220openalex-snapshot
Strength and tempo of selection revealed in viral gene genealogies
inferredcites →https://doi.org/10.1186/1741-7007-10-38openalex-snapshot
Canalization of the evolutionary trajectory of the human influenza virus
inferredcites →https://doi.org/10.1186/1745-6150-1-34openalex-snapshot
Long intervals of stasis punctuated by bursts of positive selection in the seasonal evolution of influenza A virus
inferredcites →https://doi.org/10.1198/016214501753208690openalex-snapshot
Bayesian Multidimensional Scaling and Choice of Dimension
inferredcites →https://doi.org/10.1371/journal.pcbi.1000949openalex-snapshot
A Computational Framework for Influenza Antigenic Cartography
inferredcites →https://doi.org/10.1371/journal.pmed.1001051openalex-snapshot
Predicting the Epidemic Sizes of Influenza A/H1N1, A/H3N2, and B: A Statistical Method
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Global Patterns in Seasonal Activity of Influenza A/H3N2, A/H1N1, and B from 1997 to 2005: Viral Coexistence and Latitudinal Gradients
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Genetic and Antigenic Analysis of the First A/New Caledonia/20/99-like H1N1 Influenza Isolates Reported in the Americas
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Circulation and antigenic drift in human influenza B viruses in SE Asia and Oceania since 2000
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Mathematical Insights on Influenza Virus: Unveiling Dynamics and Informing Control Strategies
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Multiple viral introductions: molecular characterization of influenza B virus in Wenzhou, Zhejiang, China, from 2011 to 2014 based on hemagglutinin and neuraminidase genes
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Genetic characterisation of the influenza viruses circulating in Bulgaria during the 2019–2020 winter season
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High Clinical Burden of Influenza Disease in Adults Aged ≥ 65 Years: Can We Do Better? A Systematic Literature Review
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Swine-origin influenza A (H1N1) virus: current status, threats, and challenges
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Whole-genome sequences of two influenza A (H3N2) virus strains isolated from Qinghai, China
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Immunogenic Stimulus for Germline Precursors of Antibodies that Engage the Influenza Hemagglutinin Receptor-Binding Site
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Recent advances in computational phylodynamics
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FluAttn: Antigenicity prediction of influenza A/H3N2 through attention-based feature mining
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Interim estimates of divergence date and vaccine strain match of human influenza A(H3N2) virus from systematic influenza surveillance (2010–2015) in Hangzhou, southeast of China
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Improving the selection and development of influenza vaccine viruses – Report of a WHO informal consultation on improving influenza vaccine virus selection, Hong Kong SAR, China, 18–20 November 2015
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Influenza hemagglutinin antigenic distance measures capture trends in HAI differences and infection outcomes, but are not suitable predictive tools
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Inactivated influenza virions are a flexible vaccine platform for eliciting protective antibody responses against neuraminidase
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A recombinant N2 neuraminidase-based CpG 1018® adjuvanted vaccine provides protection against challenge with heterologous influenza viruses in mice and hamsters
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Guided design for the development of an evolution-proof influenza vaccine
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Molecular footprints of selective pressure in the neuraminidase gene of currently circulating human influenza subtypes and lineages
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Mortality, morbidity, and hospitalisations due to influenza lower respiratory tract infections, 2017: an analysis for the Global Burden of Disease Study 2017
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Does repeated influenza vaccination attenuate effectiveness? A systematic review and meta-analysis
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Epidemiology of repeat influenza infection in Queensland, Australia, 2005–2017
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Structure-Guided Molecular Grafting of a Complex Broadly Neutralizing Viral Epitope
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Global circulation patterns of seasonal influenza viruses vary with antigenic drift
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Selection of antigenically advanced variants of seasonal influenza viruses
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The evolution of seasonal influenza viruses
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A comprehensive influenza reporter virus panel for high-throughput deep profiling of neutralizing antibodies
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Lineage-specific protection and immune imprinting shape the age distributions of influenza B cases
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Age-seroprevalence curves for the multi-strain structure of influenza A virus
inferred← citeshttps://doi.org/10.1038/s41467-022-28858-9openalex-snapshot
Homotypic protection against influenza in a pediatric cohort in Managua, Nicaragua
inferred← citeshttps://doi.org/10.1038/s41467-022-29402-5openalex-snapshot
Human seasonal influenza under COVID-19 and the potential consequences of influenza lineage elimination
inferred← citeshttps://doi.org/10.1038/s41467-023-44668-zopenalex-snapshot
Determinants of epidemic size and the impacts of lulls in seasonal influenza virus circulation
inferred← citeshttps://doi.org/10.1038/s41467-024-45145-xopenalex-snapshot
MAIVeSS: streamlined selection of antigenically matched, high-yield viruses for seasonal influenza vaccine production
inferred← citeshttps://doi.org/10.1038/s41467-024-47862-9openalex-snapshot
Seasonal antigenic prediction of influenza A H3N2 using machine learning
inferred← citeshttps://doi.org/10.1038/s41467-024-53872-4openalex-snapshot
Characterizing the interactions between influenza and respiratory syncytial viruses and their implications for epidemic control
inferred← citeshttps://doi.org/10.1038/s41467-025-55840-yopenalex-snapshot
Disruption of seasonal influenza circulation and evolution during the 2009 H1N1 and COVID-19 pandemics in Southeastern Asia
inferred← citeshttps://doi.org/10.1038/s41467-025-65396-6openalex-snapshot
Unraveling the mechanism behind the probable extinction of the B/Yamagata lineage of influenza B viruses
inferred← citeshttps://doi.org/10.1038/s41467-026-72718-9openalex-snapshot
Disentangling the drivers and host-mediated global spread of H7 influenza A virus
inferred← citeshttps://doi.org/10.1038/s41541-018-0093-1openalex-snapshot
Broadened immunity against influenza by vaccination with computationally designed influenza virus N1 neuraminidase constructs
inferred← citeshttps://doi.org/10.1038/s41541-024-01057-xopenalex-snapshot
Antibody responses against influenza A decline with successive years of annual influenza vaccination
inferred← citeshttps://doi.org/10.1038/s41559-022-01860-6openalex-snapshot
Ecological and evolutionary dynamics of multi-strain RNA viruses
inferred← citeshttps://doi.org/10.1038/s41559-025-02895-1openalex-snapshot
Pleiotropic mutational effects on function and stability constrain the antigenic evolution of influenza haemagglutinin
inferred← citeshttps://doi.org/10.1038/s41564-024-01732-8openalex-snapshot
Immune imprinting in early life shapes cross-reactivity to influenza B virus haemagglutinin
inferred← citeshttps://doi.org/10.1038/s41564-025-02033-4openalex-snapshot
Breadth of influenza A antibody cross-reactivity varies by virus isolation interval and subtype
inferred← citeshttps://doi.org/10.1038/s41590-018-0305-xopenalex-snapshot
Mosaic nanoparticle display of diverse influenza virus hemagglutinins elicits broad B cell responses
inferred← citeshttps://doi.org/10.1038/s41591-018-0340-zopenalex-snapshot
Current and future influenza vaccines
inferred← citeshttps://doi.org/10.1038/s41591-026-04461-zopenalex-snapshot
Limited evidence of AI superiority in seasonal influenza vaccine strain selection
inferred← citeshttps://doi.org/10.1038/s41598-017-05579-4openalex-snapshot
Different Repeat Annual Influenza Vaccinations Improve the Antibody Response to Drifted Influenza Strains
inferred← citeshttps://doi.org/10.1038/s41598-021-00795-5openalex-snapshot
Circulation patterns of human seasonal Influenza A viruses in Chile before H1N1pdm09 pandemic
inferred← citeshttps://doi.org/10.1038/s41598-022-20179-7openalex-snapshot
The evolutionary footprint of influenza A subtype H3N2 strains in Bangladesh: implication of vaccine strain selection
inferred← citeshttps://doi.org/10.1038/s41598-024-74218-6openalex-snapshot
Local patterns of spread of influenza A H3N2 virus in coastal Kenya over a 1-year period revealed through virus sequence data
inferred← citeshttps://doi.org/10.1038/s43588-022-00375-1openalex-snapshot
Harnessing low dimensionality to visualize the antibody–virus landscape for influenza
inferred← citeshttps://doi.org/10.1038/s43856-023-00320-xopenalex-snapshot
Evolutionary implications of SARS-CoV-2 vaccination for the future design of vaccination strategies
inferred← citeshttps://doi.org/10.1038/srep14171openalex-snapshot
Antigenic Patterns and Evolution of the Human Influenza A (H1N1) Virus
inferred← citeshttps://doi.org/10.1038/srep33334openalex-snapshot
Long-term adaptation of the influenza A virus by escaping cytotoxic T-cell recognition
inferred← citeshttps://doi.org/10.1073/pnas.1525578113openalex-snapshot
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
inferred← citeshttps://doi.org/10.1073/pnas.1904246116openalex-snapshot
Allele-specific nonstationarity in evolution of influenza A virus surface proteins
inferred← citeshttps://doi.org/10.1073/pnas.2012327118openalex-snapshot
Anomalous influenza seasonality in the United States and the emergence of novel influenza B viruses
inferred← citeshttps://doi.org/10.1073/pnas.2026752118openalex-snapshot
Differential immune imprinting by influenza virus vaccination and infection in nonhuman primates
inferred← citeshttps://doi.org/10.1073/pnas.2103398118openalex-snapshot
Antigenic waves of virus-immune co-evolution
inferred← citeshttps://doi.org/10.1073/pnas.2113512119openalex-snapshot
Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints
inferred← citeshttps://doi.org/10.1073/pnas.2211616119openalex-snapshot
Substitutions near the HA receptor binding site explain the origin and major antigenic change of the B/Victoria and B/Yamagata lineages
inferred← citeshttps://doi.org/10.1073/pnas.2307712120openalex-snapshot
Evolutionary stability of antigenically escaping viruses
inferred← citeshttps://doi.org/10.1080/10618600.2020.1754226openalex-snapshot
Massive Parallelization Boosts Big Bayesian Multidimensional Scaling
inferred← citeshttps://doi.org/10.1080/14760584.2023.2290691openalex-snapshot
Influenza B virus neuraminidase: a potential target for next-generation vaccines?
inferred← citeshttps://doi.org/10.1080/21505594.2024.2395837openalex-snapshot
Characterization of Conserved Evolution in H7N9 Avian Influenza Virus Prior Mass Vaccination
inferred← citeshttps://doi.org/10.1080/21645515.2017.1290018openalex-snapshot
Fc or not Fc; that is the question: Antibody Fc-receptor interactions are key to universal influenza vaccine design
inferred← citeshttps://doi.org/10.1080/21645515.2018.1528832openalex-snapshot
Evaluation of the field-protective effectiveness of seasonal influenza vaccine among Korean children aged < 5 years during the 2014–2015 and 2015–2016 influenza seasons: a cohort study
inferred← citeshttps://doi.org/10.1080/21645515.2020.1734397openalex-snapshot
Antigenicity prediction and vaccine recommendation of human influenza virus A (H3N2) using convolutional neural networks
inferred← citeshttps://doi.org/10.1080/21645515.2023.2236537openalex-snapshot
Long-term influenza antibodies profiles in previously vaccinated and non-vaccinated adults
inferred← citeshttps://doi.org/10.1080/22221751.2019.1679611openalex-snapshot
Human infection with a novel reassortant Eurasian-avian lineage swine H1N1 virus in northern China
inferred← citeshttps://doi.org/10.1080/22221751.2025.2490531openalex-snapshot
Influenza vaccine effectiveness among primary and secondary school students in Shenzhen during the 2023/24 influenza season
inferred← citeshttps://doi.org/10.1080/22221751.2026.2620237openalex-snapshot
Phylodynamic reconstruction of H1N1pdm09 influenza virus transmission in Brazil: a decade of evolutionary dynamics
inferred← citeshttps://doi.org/10.1080/23744235.2025.2466118openalex-snapshot
Genetic diversity and impact of vaccination on influenza A (H1N1)pdm09 in Mar del Plata, Argentina: a 2015–2020 molecular epidemiological study
inferred← citeshttps://doi.org/10.1084/jem.20241283openalex-snapshot
Vaccination against influenza viruses annually: Renewing or narrowing the protective shield?
inferred← citeshttps://doi.org/10.1093/bib/bbac326openalex-snapshot
Viral informatics: bioinformatics-based solution for managing viral infections
inferred← citeshttps://doi.org/10.1093/bib/bbae033openalex-snapshot
PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network
inferred← citeshttps://doi.org/10.1093/bib/bbaf308openalex-snapshot
PREDAC-FluB: predicting antigenic clusters of seasonal influenza B viruses with protein language model embedding based convolutional neural network
inferred← citeshttps://doi.org/10.1093/bioinformatics/btaf372openalex-snapshot
Topolow: a mapping algorithm for antigenic cross-reactivity and binding affinity assays
inferred← citeshttps://doi.org/10.1093/cid/ciz358openalex-snapshot
Successes and Failures of the Live-attenuated Influenza Vaccine: Can We Do Better?
inferred← citeshttps://doi.org/10.1093/gbe/evad099openalex-snapshot
Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation
inferred← citeshttps://doi.org/10.1093/gbe/evv240openalex-snapshot
Genome-Wide Analysis of Evolutionary Markers of Human Influenza A(H1N1)pdm09 and A(H3N2) Viruses May Guide Selection of Vaccine Strain Candidates
inferred← citeshttps://doi.org/10.1093/infdis/jix546openalex-snapshot
Primary Human Influenza B Virus Infection Induces Cross-Lineage Hemagglutinin Stalk–Specific Antibodies Mediating Antibody-Dependent Cellular Cytoxicity
inferred← citeshttps://doi.org/10.1093/infdis/jiz055openalex-snapshot
Effects of Sequential Influenza A(H1N1)pdm09 Vaccination on Antibody Waning
inferred← citeshttps://doi.org/10.1093/molbev/msab031openalex-snapshot
Relax, Keep Walking — A Practical Guide to Continuous Phylogeographic Inference with BEAST
inferred← citeshttps://doi.org/10.1093/molbev/msaf227openalex-snapshot
Seasonal Influenza Viruses Show Distinct Adaptive Dynamics During Growth in Chicken Eggs
inferred← citeshttps://doi.org/10.1093/molbev/msu287openalex-snapshot
Reassortment between Influenza B Lineages and the Emergence of a Coadapted PB1–PB2–HA Gene Complex
inferred← citeshttps://doi.org/10.1093/molbev/msv185openalex-snapshot
Bayesian Inference Reveals Host-Specific Contributions to the Epidemic Expansion of Influenza A H5N1
inferred← citeshttps://doi.org/10.1093/molbev/msw082openalex-snapshot
SpreaD3: Interactive Visualization of Spatiotemporal History and Trait Evolutionary Processes
inferred← citeshttps://doi.org/10.1093/molbev/msz050openalex-snapshot
Cluster-Transition Determining Sites Underlying the Antigenic Evolution of Seasonal Influenza Viruses
inferred← citeshttps://doi.org/10.1093/pnasnexus/pgac143openalex-snapshot
Immunity-induced criticality of the genotype network of influenza A (H3N2) hemagglutinin
inferred← citeshttps://doi.org/10.1093/sysbio/syw054openalex-snapshot
Emerging Concepts of Data Integration in Pathogen Phylodynamics
inferred← citeshttps://doi.org/10.1093/sysbio/syw093openalex-snapshot
A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution
inferred← citeshttps://doi.org/10.1093/ve/veaa045openalex-snapshot
Epidemiological and evolutionary dynamics of influenza B virus in coastal Kenya as revealed by genomic analysis of strains sampled over a single season
inferred← citeshttps://doi.org/10.1093/ve/veac110openalex-snapshot
A biophysical model of viral escape from polyclonal antibodies
inferred← citeshttps://doi.org/10.1093/ve/veae042openalex-snapshot
Influenza A genomic diversity during human infections underscores the strength of genetic drift and the existence of tight transmission bottlenecks
inferred← citeshttps://doi.org/10.1093/ve/veae046openalex-snapshot
Natural variation in neuraminidase activity influences the evolutionary potential of the seasonal H1N1 lineage hemagglutinin
inferred← citeshttps://doi.org/10.1093/ve/veae102openalex-snapshot
Comprehensive molecular epidemiology of influenza viruses in Brazil: insights from a nationwide analysis
inferred← citeshttps://doi.org/10.1093/ve/veaf086openalex-snapshot
Near real-time data on the human neutralizing antibody landscape to influenza virus to inform vaccine-strain selection in September 2025
inferred← citeshttps://doi.org/10.1093/ve/veag046openalex-snapshot
Near real-time data on the human neutralizing antibody landscape to influenza virus as of early 2026 to inform vaccine-strain selection
inferred← citeshttps://doi.org/10.1093/ve/vev006openalex-snapshot
Time dependence of evolutionary metrics during the 2009 pandemic influenza virus outbreak
inferred← citeshttps://doi.org/10.1093/ve/vev011openalex-snapshot
Elucidating the phylodynamics of endemic rabies virus in eastern Africa using whole-genome sequencing
inferred← citeshttps://doi.org/10.1093/ve/vev025openalex-snapshot
Determination of antigenicity-altering patches on the major surface protein of human influenza A/H3N2 viruses
inferred← citeshttps://doi.org/10.1093/ve/vew026openalex-snapshot
Sequence amplification via cell passaging creates spurious signals of positive adaptation in influenza virus H3N2 hemagglutinin
inferred← citeshttps://doi.org/10.1093/ve/vey016openalex-snapshot
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10
inferred← citeshttps://doi.org/10.1093/ve/vey033openalex-snapshot
Modeling site-specific amino-acid preferences deepens phylogenetic estimates of viral sequence divergence
inferred← citeshttps://doi.org/10.1093/ve/vez046openalex-snapshot
Evolution and rapid spread of a reassortant A(H3N2) virus that predominated the 2017–2018 influenza season
inferred← citeshttps://doi.org/10.1098/rsos.160914openalex-snapshot
Human mobility networks and persistence of rapidly mutating pathogens
inferred← citeshttps://doi.org/10.1098/rsos.181095openalex-snapshot
Bursts of amino acid replacements in protein evolution
inferred← citeshttps://doi.org/10.1098/rspb.2016.1312openalex-snapshot
Explaining the geographical origins of seasonal influenza A (H3N2)
inferred← citeshttps://doi.org/10.1099/jmm.0.000668openalex-snapshot
Predominance of influenza A(H3N2) viruses during the 2016/2017 season in Bulgaria
inferred← citeshttps://doi.org/10.1099/jmm.0.001198openalex-snapshot
Genetic diversity of influenza A viruses circulating in Bulgaria during the 2018–2019 winter season
inferred← citeshttps://doi.org/10.1099/jmm.0.001864openalex-snapshot
Resurgence of influenza with increased genetic diversity of circulating viruses during the 2022–2023 season
inferred← citeshttps://doi.org/10.1099/mgen.0.000025openalex-snapshot
K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets
inferred← citeshttps://doi.org/10.1099/mgen.0.000643openalex-snapshot
Whole-genome-based phylogenomic analysis of the Belgian 2016–2017 influenza A(H3N2) outbreak season allows improved surveillance
inferred← citeshttps://doi.org/10.1101/137661openalex-snapshot
Role of competition in the strain structure of rotavirus under invasion and reassortment
inferred← citeshttps://doi.org/10.1101/162545openalex-snapshot
The beneficial effects of vaccination on the evolution of seasonal influenza
inferred← citeshttps://doi.org/10.1101/2020.03.02.973958openalex-snapshot
Saturation of influenza virus neutralization and antibody consumption can both lead to bistable growth kinetics
inferred← citeshttps://doi.org/10.1101/2020.10.24.353748openalex-snapshot
The effective population size and mutation rate of influenza A virus in acutely infected individuals
inferred← citeshttps://doi.org/10.1101/2020.10.30.352914openalex-snapshot
Evidence for adaptive evolution in the receptor-binding domain of seasonal coronaviruses OC43 and 229E
inferred← citeshttps://doi.org/10.1101/2021.01.03.21249160openalex-snapshot
Age-seroprevalence curves for the multi-strain structure of influenza A virus
inferred← citeshttps://doi.org/10.1101/2021.02.20.432103openalex-snapshot
Antigenic waves of virus-immune co-evolution
inferred← citeshttps://doi.org/10.1101/2021.07.01.450528openalex-snapshot
High confidence identification of intra-host single nucleotide variants for person-to-person influenza transmission tracking in congregate settings
inferred← citeshttps://doi.org/10.1101/2021.07.28.454153openalex-snapshot
Inferring the intrinsic mutational fitness landscape of influenza-like evolving antigens from temporally ordered sequence data
inferred← citeshttps://doi.org/10.1101/2021.11.17.469008openalex-snapshot
Genetic and antigenic characterization of an expanding H3 influenza A virus clade in US swine visualized by Nextstrain
inferred← citeshttps://doi.org/10.1101/2022.04.20.488870openalex-snapshot
Evolution of influenza A virus hemagglutinin H1 and H3 across host species
inferred← citeshttps://doi.org/10.1101/2022.11.07.515399openalex-snapshot
Long-range Hill-Robertson effect in adapting populations with recombination and standing variation
inferred← citeshttps://doi.org/10.1101/2023.02.20.529183openalex-snapshot
Modernizing the original influenza vaccine to enhance protective antibody responses against neuraminidase antigens
inferred← citeshttps://doi.org/10.1101/2023.05.19.541367openalex-snapshot
An Atlas of Adaptive Evolution in Endemic Human Viruses
inferred← citeshttps://doi.org/10.1101/2023.05.23.541996openalex-snapshot
Combinatorial immune refocusing within the influenza hemagglutinin head elicits cross-neutralizing antibody responses
inferred← citeshttps://doi.org/10.1101/2023.06.30.547218openalex-snapshot
The evolutionary history of hepaciviruses
inferred← citeshttps://doi.org/10.1101/2023.08.25.554879openalex-snapshot
Differential cross-reactivity to the influenza B virus haemagglutinin underpins lineage-specific susceptibility between birth cohorts
inferred← citeshttps://doi.org/10.1101/2023.08.30.555500openalex-snapshot
The antigenic landscape of human influenza N2 neuraminidases from 2009 until 2017
inferred← citeshttps://doi.org/10.1101/2023.09.08.23295244openalex-snapshot
How immunity shapes the long-term dynamics of seasonal influenza
inferred← citeshttps://doi.org/10.1101/2023.10.02.23296453openalex-snapshot
Antigenic drift and subtype interference shape A(H3N2) epidemic dynamics in the United States
inferred← citeshttps://doi.org/10.1101/2023.12.20.23300299openalex-snapshot
COVID-19 pandemic re-shaped the global dispersal of seasonal influenza viruses
inferred← citeshttps://doi.org/10.1101/2024.03.14.584765openalex-snapshot
A hemagglutinin and neuraminidase biased immunological memory shapes the dynamics of antibody responses to Influenza A virus
inferred← citeshttps://doi.org/10.1101/2024.03.19.585703openalex-snapshot
Concepts and methods for predicting viral evolution
inferred← citeshttps://doi.org/10.1101/2024.03.20.585891openalex-snapshot
Antigenic drift expands viral escape pathways from imprinted host humoral immunity
inferred← citeshttps://doi.org/10.1101/2024.04.22.590623openalex-snapshot
A unified theory for predicting pathogen mutual invasibility and co-circulation
inferred← citeshttps://doi.org/10.1101/2024.08.09.24311720openalex-snapshot
Commuting-driven competition between transmission chains shapes seasonal influenza virus epidemics in the United States
inferred← citeshttps://doi.org/10.1101/2025.01.08.631631openalex-snapshot
Genome-wide Viral Nascent RNA Sequencing Unveils Polymerase Pausing Landscape at Single-nucleotide Precision
inferred← citeshttps://doi.org/10.1101/2025.05.22.25328179openalex-snapshot
Estrogen upregulates NF-κB and TNF signaling in B cells to cause sex and age differences in antibody responses to seasonal influenza vaccination
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