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Population genomics of bank vole populations reveals associations between immune related genes and the epidemiology of Puumala hantavirus in Sweden

https://doi.org/10.1101/148163
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Puumala hantavirus genetic variability in an endemic region (Northern Sweden)
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Tnf-α expression and promoter sequences reflect the balance of tolerance/resistance to Puumala hantavirus infection in European bank vole populations
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Microevolution of bank voles (Myodes glareolus) at neutral and immune-related genes during multiannual dynamic cycles: Consequences for Puumala hantavirus epidemiology
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Experimental infections of wild bank voles ( Myodes glareolus ) from nephropatia epidemica endemic and non-endemic regions revealed slight differences in Puumala virological course and immunological responses
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Landscape features and helminth co-infection shape bank vole immunoheterogeneity, with consequences for Puumala virus epidemiology
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Harnessing the power of RADseq for ecological and evolutionary genomics
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Distribution and genetic heterogeneity of Puumala virus in Sweden
inferredcites →https://doi.org/10.1099/vir.0.016618-0openalex-snapshot
Puumala hantavirus and Myodes glareolus in northern Europe: no evidence of co-divergence between genetic lineages of virus and host
inferredcites →https://doi.org/10.1099/vir.0.81643-0openalex-snapshot
Prolonged survival of Puumala hantavirus outside the host: evidence for indirect transmission via the environment
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The coupling hypothesis: why genome scans may fail to map local adaptation genes
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Patterns and processes of dispersal behaviour in arvicoline rodents
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The trouble with isolation by distance
inferredcites →https://doi.org/10.1111/mec.12350openalex-snapshot
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inferredcites →https://doi.org/10.1111/mec.12360openalex-snapshot
Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping
inferredcites →https://doi.org/10.1111/mec.12725openalex-snapshot
Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests
inferredcites →https://doi.org/10.1111/mec.13100openalex-snapshot
The relative power of genome scans to detect local adaptation depends on sampling design and statistical method
inferredcites →https://doi.org/10.1111/mec.13473openalex-snapshot
The role of parasite‐driven selection in shaping landscape genomic structure in red grouse (Lagopus lagopus scotica)
inferredcites →https://doi.org/10.1111/mec.13513openalex-snapshot
Controlling false discoveries in genome scans for selection
inferredcites →https://doi.org/10.1111/mec.13657openalex-snapshot
Population genomic evidence for adaptive differentiation in the Baltic Sea herring
inferredcites →https://doi.org/10.1126/science.1208708openalex-snapshot
Negative Frequency-Dependent Selection of Sexually Antagonistic Alleles in Myodes glareolus
inferredcites →https://doi.org/10.1128/jvi.02405-09openalex-snapshot
Pathogenic Hantaviruses Direct the Adherence of Quiescent Platelets to Infected Endothelial Cells
inferredcites →https://doi.org/10.1146/annurev.genom.9.081307.164428openalex-snapshot
Infectious Disease in the Genomic Era
inferredcites →https://doi.org/10.1182/blood-2013-11-536003openalex-snapshot
Platelet-TLR7 mediates host survival and platelet count during viral infection in the absence of platelet-dependent thrombosis
inferredcites →https://doi.org/10.1186/1471-2148-11-355openalex-snapshot
Introgression of mitochondrial DNA among Myodes voles: consequences for energetics?
inferredcites →https://doi.org/10.1186/1476-072x-11-39openalex-snapshot
Modelling zoonotic diseases in humans: comparison of methods for hantavirus in Sweden
inferredcites →https://doi.org/10.1186/s12864-016-2783-2openalex-snapshot
Changes in selective pressures associated with human population expansion may explain metabolic and immune related pathways enriched for signatures of positive selection
inferredcites →https://doi.org/10.1371/journal.pgen.1002355openalex-snapshot
Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution
inferredcites →https://doi.org/10.1371/journal.pntd.0003929openalex-snapshot
A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0018561openalex-snapshot
Local De Novo Assembly of RAD Paired-End Contigs Using Short Sequencing Reads
inferredcites →https://doi.org/10.1371/journal.pone.0021800openalex-snapshot
REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms
inferredcites →https://doi.org/10.1371/journal.ppat.1000172openalex-snapshot
Immunological Mechanisms Mediating Hantavirus Persistence in Rodent Reservoirs
inferredcites →https://doi.org/10.1534/genetics.110.114819openalex-snapshot
Using Environmental Correlations to Identify Loci Underlying Local Adaptation
inferredcites →https://doi.org/10.1534/genetics.113.152462openalex-snapshot
Robust Identification of Local Adaptation from Allele Frequencies
inferredcites →https://doi.org/10.1534/genetics.113.152991openalex-snapshot
Detecting and Measuring Selection from Gene Frequency Data
inferredcites →https://doi.org/10.1534/genetics.115.181453openalex-snapshot
Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates
inferredcites →https://doi.org/10.3201/eid1405.071124openalex-snapshot
Outbreak of Puumala Virus Infection, Sweden
inferredcites →https://doi.org/10.3201/eid1408.080221openalex-snapshot
Puumala Hantavirus Excretion Kinetics in Bank Voles (Myodes glareolus)
inferredcites →https://doi.org/10.3389/fpubh.2015.00054openalex-snapshot
Landscape and Regional Environmental Analysis of the Spatial Distribution of Hantavirus Human Cases in Europe
inferredcites →https://doi.org/10.3390/v6052214openalex-snapshot
Immunogenetic Factors Affecting Susceptibility of Humans and Rodents to Hantaviruses and the Clinical Course of Hantaviral Disease in Humans
inferredcites →https://doi.org/10.4098/at.arch.98-13openalex-snapshot
Geographic localization of a contact zone between bank voles Clethrionomys glareolus with distinctly different mitochondrial DNA
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Apport de l’immunogénétique à la compréhension des interactions entre le campagnol roussâtre Myodes glareolus et l’hantavirus Puumala
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