On the public citation graph

Using mitochondrial genomes to infer phylogenetic relationships among the oldest extant winged insects (Palaeoptera)

0 signed · 96 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/clad.2000.0147openalex-snapshot

The Phylogeny of the Extant Hexapod Orders

inferredcites →https://doi.org/10.1006/clad.2002.0199openalex-snapshot

The Palaeoptera Problem: Basal Pterygote Phylogeny Inferred from 18S and 28S rDNA Sequences

inferredcites →https://doi.org/10.1007/978-1-4939-0835-6_21openalex-snapshot

Dealing with Pseudogenes in Molecular Diagnostics in the Next-Generation Sequencing Era

inferredcites →https://doi.org/10.1007/bf01215182openalex-snapshot

Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes

inferredcites →https://doi.org/10.1007/s10750-007-9028-yopenalex-snapshot

Global diversity of mayflies (Ephemeroptera, Insecta) in freshwater

inferredcites →https://doi.org/10.1007/s11033-009-9944-1openalex-snapshot

The complete mitochondrial genome of the cockroach Eupolyphaga sinensis (Blattaria: Polyphagidae) and the phylogenetic relationships within the Dictyoptera

inferredcites →https://doi.org/10.1016/j.gene.2008.07.037openalex-snapshot

The complete mitochondrial genome of Parafronurus youi (Insecta: Ephemeroptera) and phylogenetic position of the Ephemeroptera

inferredcites →https://doi.org/10.1016/j.gene.2010.08.001openalex-snapshot

The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota

inferredcites →https://doi.org/10.1016/j.gene.2013.12.044openalex-snapshot

Complete mitochondrial genome of the stonefly Cryptoperla stilifera Sivec (Plecoptera: Peltoperlidae) and the phylogeny of Polyneopteran insects

inferredcites →https://doi.org/10.1016/j.gene.2014.04.059openalex-snapshot

The phylogeny of Ephemeroptera in Pterygota revealed by the mitochondrial genome of Siphluriscus chinensis (Hexapoda: Insecta)

inferredcites →https://doi.org/10.1016/j.tree.2007.01.012openalex-snapshot

Deciphering ancient rapid radiations

inferredcites →https://doi.org/10.1016/j.ympev.2005.05.008openalex-snapshot

Aligned 18S for Zoraptera (Insecta): Phylogenetic position and molecular evolution

inferredcites →https://doi.org/10.1016/j.ympev.2006.04.021openalex-snapshot

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

inferredcites →https://doi.org/10.1016/j.ympev.2008.07.004openalex-snapshot

A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data

inferredcites →https://doi.org/10.1016/j.ympev.2009.01.011openalex-snapshot

MtZoa: A general mitochondrial amino acid substitutions model for animal evolutionary studies

inferredcites →https://doi.org/10.1016/j.ympev.2010.11.001openalex-snapshot

Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences

inferredcites →https://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot

MITOS: Improved de novo metazoan mitochondrial genome annotation

inferredcites →https://doi.org/10.1016/j.ympev.2013.09.011openalex-snapshot

BaCoCa – A heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions

inferredcites →https://doi.org/10.1016/j.zool.2007.08.003openalex-snapshot

Towards an 18S phylogeny of hexapods: Accounting for group-specific character covariance in optimized mixed nucleotide/doublet models

inferredcites →https://doi.org/10.1016/s0169-5347(01)02151-6openalex-snapshot

Mitochondrial pseudogenes: evolution's misplaced witnesses

inferredcites →https://doi.org/10.1016/s0305-1978(96)00042-7openalex-snapshot

Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies

inferredcites →https://doi.org/10.1016/s0748-3007(03)00083-5openalex-snapshot

The problem with “the Paleoptera Problem:” sense and sensitivity

inferredcites →https://doi.org/10.1038/376163a0openalex-snapshot

Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements

inferredcites →https://doi.org/10.1038/nature08742openalex-snapshot

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

inferredcites →https://doi.org/10.1038/srep36175openalex-snapshot

Molecular phylogeny of Polyneoptera (Insecta) inferred from expanded mitogenomic data

inferredcites →https://doi.org/10.1073/pnas.0803076105openalex-snapshot

Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified

inferredcites →https://doi.org/10.1080/10635150490445922openalex-snapshot

Aligned 18S and Insect Phylogeny

inferredcites →https://doi.org/10.1080/10635150600697358openalex-snapshot

Resolution of Phylogenetic Conflict in Large Data Sets by Increased Taxon Sampling

inferredcites →https://doi.org/10.1093/aesa/87.6.651openalex-snapshot

Evolution, Weighting, and Phylogenetic Utility of Mitochondrial Gene Sequences and a Compilation of Conserved Polymerase Chain Reaction Primers

inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot

APE: Analyses of Phylogenetics and Evolution in R language

inferredcites →https://doi.org/10.1093/bioinformatics/bth352openalex-snapshot

Automatic annotation of organellar genomes with DOGMA

inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot

ProtTest: selection of best-fit models of protein evolution

inferredcites →https://doi.org/10.1093/bioinformatics/btm573openalex-snapshot

ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btq706openalex-snapshot

phangorn: phylogenetic analysis in R

inferredcites →https://doi.org/10.1093/bioinformatics/btr170openalex-snapshot

Correcting errors in short reads by multiple alignments

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/gbe/evs104openalex-snapshot

Insect Phylogenomics: Exploring the Source of Incongruence Using New Transcriptomic Data

inferredcites →https://doi.org/10.1093/molbev/msl136openalex-snapshot

MtArt: A New Model of Amino Acid Replacement for Arthropoda

inferredcites →https://doi.org/10.1093/molbev/msl137openalex-snapshot

Lack of Resolution in the Animal Phylogeny: Closely Spaced Cladogeneses or Undetected Systematic Errors?

inferredcites →https://doi.org/10.1093/molbev/msm060openalex-snapshot

Heads or Tails: A Simple Reliability Check for Multiple Sequence Alignments

inferredcites →https://doi.org/10.1093/molbev/msp191openalex-snapshot

A Phylogenomic Approach to Resolve the Basal Pterygote Divergence

inferredcites →https://doi.org/10.1093/molbev/msq130openalex-snapshot

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

inferredcites →https://doi.org/10.1093/molbev/msr270openalex-snapshot

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

inferredcites →https://doi.org/10.1093/molbev/mss020openalex-snapshot

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot

tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/27.8.1767openalex-snapshot

Animal mitochondrial genomes

inferredcites →https://doi.org/10.1093/nar/gkt289openalex-snapshot

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

inferredcites →https://doi.org/10.1093/nar/gku917openalex-snapshot

Multiplex sequencing of pooled mitochondrial genomes—a crucial step toward biodiversity analysis using mito-metagenomics

inferredcites →https://doi.org/10.1093/nar/gkv318openalex-snapshot

GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025604openalex-snapshot

Majority-rule reduced consensus trees and their use in bootstrapping

inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

inferredcites →https://doi.org/10.1093/sysbio/sys078openalex-snapshot

Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice

inferredcites →https://doi.org/10.1093/sysbio/sys091openalex-snapshot

The Identification of Concerted Convergence in Insect Heads Corroborates Palaeoptera

inferredcites →https://doi.org/10.1093/sysbio/sys093openalex-snapshot

Relaxed Phylogenetics and the Palaeoptera Problem: Resolving Deep Ancestral Splits in the Insect Phylogeny

inferredcites →https://doi.org/10.1098/rsbl.2007.0102openalex-snapshot

Death of an order: a comprehensive molecular phylogenetic study confirms that termites are eusocial cockroaches

inferredcites →https://doi.org/10.1098/rsif.2016.0363openalex-snapshot

Progress, pitfalls and parallel universes: a history of insect phylogenetics

inferredcites →https://doi.org/10.1098/rspb.2012.0744openalex-snapshot

Insect phylogenomics: results, problems and the impact of matrix composition

inferredcites →https://doi.org/10.1111/1748-5967.12051openalex-snapshot

Molecular phylogeny of the higher taxa of O donata ( I nsecta) inferred from COI , 16S r RNA , 28S r RNA , and EF 1‐α sequences

inferredcites →https://doi.org/10.1111/1755-0998.12576openalex-snapshot

discomark : nuclear marker discovery from orthologous sequences using draft genome data

inferredcites →https://doi.org/10.1111/j.1096-0031.2000.tb00353.xopenalex-snapshot

A Review of Arthropod Phylogeny: New Data Based on Ribosomal DNA Sequences and Direct Character Optimization

inferredcites →https://doi.org/10.1111/j.1365-3113.2009.00488.xopenalex-snapshot

Towards a new paradigm in mayfly phylogeny (Ephemeroptera): combined analysis of morphological and molecular data

inferredcites →https://doi.org/10.1111/j.1440-6055.2012.00857.xopenalex-snapshot

A view from the edge of the forest: recent progress in understanding the relationships of the insect orders

inferredcites →https://doi.org/10.1111/syen.12028openalex-snapshot

Insect phylogenomics: new insights on the relationships of lower neopteran orders ( P olyneoptera)

inferredcites →https://doi.org/10.1126/science.1257570openalex-snapshot

Phylogenomics resolves the timing and pattern of insect evolution

inferredcites →https://doi.org/10.1126/science.331.6023.1386openalex-snapshot

Creating a Buzz About Insect Genomes

inferredcites →https://doi.org/10.1139/g09-055openalex-snapshot

The complete mitogenome sequences of the palaeopteran insectsEphemera orientalis(Ephemeroptera: Ephemeridae) andDavidius lunatus(Odonata: Gomphidae)

inferredcites →https://doi.org/10.1146/annurev-ento-011613-162007openalex-snapshot

Insect Mitochondrial Genomics: Implications for Evolution and Phylogeny

inferredcites →https://doi.org/10.1146/annurev-ento-120710-100538openalex-snapshot

Advances in Insect Phylogeny at the Dawn of the Postgenomic Era

inferredcites →https://doi.org/10.1146/annurev.ento.53.103106.093304openalex-snapshot

Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis

inferredcites →https://doi.org/10.11646/zootaxa.3703.1.9openalex-snapshot

The classification and diversity of dragonflies and damselflies (Odonata). In: Zhang, Z.-Q. (Ed.) Animal Biodiversity: An Outline of Higher-level Classification and Survey of Taxonomic Richness (Addenda 2013)

inferredcites →https://doi.org/10.1186/1471-2148-11-315openalex-snapshot

What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny

inferredcites →https://doi.org/10.1186/1471-2148-13-236openalex-snapshot

Molecular phylogenetic analyses support the monophyly of Hexapoda and suggest the paraphyly of Entognatha

inferredcites →https://doi.org/10.1186/1471-2148-9-119openalex-snapshot

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

inferredcites →https://doi.org/10.1186/1471-2164-10-156openalex-snapshot

The complete mitochondrial genomes of two band-winged grasshoppers, Gastrimargus marmoratus and Oedaleus asiaticus

inferredcites →https://doi.org/10.1186/1471-2164-15-1156openalex-snapshot

The compact mitochondrial genome of Zorotypus medoensis provides insights into phylogenetic position of Zoraptera

inferredcites →https://doi.org/10.1186/1471-2164-15-566openalex-snapshot

Next-generation sequencing, phylogenetic signal and comparative mitogenomic analyses in Metacrangonyctidae (Amphipoda: Crustacea)

inferredcites →https://doi.org/10.1186/s12862-017-0987-yopenalex-snapshot

Improved mitochondrial amino acid substitution models for metazoan evolutionary studies

inferredcites →https://doi.org/10.1371/journal.pbio.0040352openalex-snapshot

Bushes in the Tree of Life

inferredcites →https://doi.org/10.1371/journal.pone.0032593openalex-snapshot

Mitochondrial Pseudogenes in the Nuclear Genomes of Drosophila

inferredcites →https://doi.org/10.1371/journal.pone.0042056openalex-snapshot

Complete Mitochondrial Genome of the Free-Living Earwig, Challia fletcheri (Dermaptera: Pygidicranidae) and Phylogeny of Polyneoptera

inferredcites →https://doi.org/10.1371/journal.pone.0058568openalex-snapshot

A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies)

inferredcites →https://doi.org/10.1371/journal.pone.0117669openalex-snapshot

The Complete Mitochondrial Genomes of Three Bristletails (Insecta: Archaeognatha): The Paraphyly of Machilidae and Insights into Archaeognathan Phylogeny

inferredcites →https://doi.org/10.1371/journal.pone.0130127openalex-snapshot

Phylogeny of Dictyoptera: Dating the Origin of Cockroaches, Praying Mantises and Termites with Molecular Data and Controlled Fossil Evidence

inferredcites →https://doi.org/10.2307/2413635openalex-snapshot

The Stresiptera Problem: Phylogeny of the Holometabolous Insect Orders Inferred from 18S and 28S Ribosomal DNA Sequences and Morphology

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3897/asp.64.e31642openalex-snapshot

A molecular phylogeny of Hexapoda

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106983openalex-snapshot

Phylomitogenomics provides new perspectives on the Euphasmatodea radiation (Insecta: Phasmatodea)

inferred← citeshttps://doi.org/10.1038/s41598-017-18615-0openalex-snapshot

New insights on basivenal sclerites using 3D tools and homology of wing veins in Odonatoptera (Insecta)

inferred← citeshttps://doi.org/10.1038/s41598-019-54391-9openalex-snapshot

The mitochondrial genomes of palaeopteran insects and insights into the early insect relationships

inferred← citeshttps://doi.org/10.3390/insects15050357openalex-snapshot

Comparative Mitogenome of Phylogenetic Relationships and Divergence Time Analysis within Potamanthidae (Insecta: Ephemeroptera)

inferred← citeshttps://doi.org/10.3390/insects15100745openalex-snapshot

Mitogenome-Based Phylogeny with Divergence Time Estimates Revealed the Presence of Cryptic Species within Heptageniidae (Insecta, Ephemeroptera)

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.