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Relaxed Phylogenetics and the Palaeoptera Problem: Resolving Deep Ancestral Splits in the Insect Phylogeny

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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PAUP * [Phylogenetic Analysis Using Parsimony (and Other Methods)]

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The Phylogeny of the Extant Hexapod Orders

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The Palaeoptera Problem: Basal Pterygote Phylogeny Inferred from 18S and 28S rDNA Sequences

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History of Insects

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PAUP (phylogenetic analysis using parsimony)

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Odonata (dragonflies and damselflies)

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Evolutionary trees from DNA sequences: A maximum likelihood approach

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Global diversity of mayflies (Ephemeroptera, Insecta) in freshwater

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Phylogeny of Higher Taxa in Insecta: Finding Synapomorphies in the Extant Fauna and Separating Them from Homoplasies

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Treatise on Invertebrate Paleontology

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The homology of wing base sclerites and flight muscles in Ephemeroptera and Neoptera and the morphology of the pterothorax of Habroleptoides confusa (Insecta: Ephemeroptera: Leptophlebiidae)

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The complete mitochondrial genome of Parafronurus youi (Insecta: Ephemeroptera) and phylogenetic position of the Ephemeroptera

inferredcites →https://doi.org/10.1016/j.gene.2010.08.001openalex-snapshot

The complete mitochondrial genome and phylogenomics of a damselfly, Euphaea formosa support a basal Odonata within the Pterygota

inferredcites →https://doi.org/10.1016/j.tig.2006.02.003openalex-snapshot

Phylogenomics: the beginning of incongruence?

inferredcites →https://doi.org/10.1016/j.tree.2007.01.012openalex-snapshot

Deciphering ancient rapid radiations

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Ecdysozoan phylogeny and Bayesian inference: first use of nearly complete 28S and 18S rRNA gene sequences to classify the arthropods and their kin

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Phylogeny of Arthropoda inferred from mitochondrial sequences: Strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution

inferredcites →https://doi.org/10.1016/j.ympev.2006.04.021openalex-snapshot

Further use of nearly complete 28S and 18S rRNA genes to classify Ecdysozoa: 37 more arthropods and a kinorhynch

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The effect of model choice on phylogenetic inference using mitochondrial sequence data: Lessons from the scorpions

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A multi criterion approach for the selection of optimal outgroups in phylogeny: Recovering some support for Mandibulata over Myriochelata using mitogenomics

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Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses

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Phylogenetic relationships among insect orders based on three nuclear protein-coding gene sequences

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Towards an 18S phylogeny of hexapods: Accounting for group-specific character covariance in optimized mixed nucleotide/doublet models

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The general stochastic model of nucleotide substitution

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The problem with “the Paleoptera Problem:” sense and sensitivity

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The root of the mammalian tree inferred from whole mitochondrial genomes

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Flight adaptations in Palaeozoic Palaeoptera (Insecta)

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Micropulsations observed by whistler-mode transmissions

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Gene translocation links insects and crustaceans

inferredcites →https://doi.org/10.1038/376165a0openalex-snapshot

Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods

inferredcites →https://doi.org/10.1038/387489a0openalex-snapshot

Evidence for a clade of nematodes, arthropods and other moulting animals

inferredcites →https://doi.org/10.1038/nature08742openalex-snapshot

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

inferredcites →https://doi.org/10.1038/nrg1603openalex-snapshot

Phylogenomics and the reconstruction of the tree of life

inferredcites →https://doi.org/10.1046/j.1365-294x.2003.02063.xopenalex-snapshot

The incomplete natural history of mitochondria

inferredcites →https://doi.org/10.1073/pnas.0610385104openalex-snapshot

Adaptive genic evolution in the Drosophila genomes

inferredcites →https://doi.org/10.1073/pnas.85.17.6424openalex-snapshot

The oldest fossil bee: Apoid history, evolutionary stasis, and antiquity of social behavior

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Jurassic larvae of mayflies (Ephemeroptera) from the Daohugou formation in Inner Mongolia, China

inferredcites →https://doi.org/10.1080/10635150290102339openalex-snapshot

Increased Taxon Sampling Greatly Reduces Phylogenetic Error

inferredcites →https://doi.org/10.1080/10635150490445922openalex-snapshot

Aligned 18S and Insect Phylogeny

inferredcites →https://doi.org/10.1080/10635150590924208openalex-snapshot

Polytomies and Bayesian Phylogenetic Inference

inferredcites →https://doi.org/10.1080/10635150590947843openalex-snapshot

Evidence for Multiple Reversals of Asymmetric Mutational Constraints during the Evolution of the Mitochondrial Genome of Metazoa, and Consequences for Phylogenetic Inferences

inferredcites →https://doi.org/10.1080/10635150600697358openalex-snapshot

Resolution of Phylogenetic Conflict in Large Data Sets by Increased Taxon Sampling

inferredcites →https://doi.org/10.1080/10635150601156305openalex-snapshot

Opinions on Multiple Sequence Alignment, and an Empirical Comparison of Repeatability and Accuracy between POY and Structural Alignment

inferredcites →https://doi.org/10.1080/10635150701311362openalex-snapshot

Profiling Phylogenetic Informativeness

inferredcites →https://doi.org/10.1080/10635150802302468openalex-snapshot

On the Distributions of Bootstrap Support and Posterior Distributions for a Star Tree

inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot

A Rapid Bootstrap Algorithm for the RAxML Web Servers

inferredcites →https://doi.org/10.1093/besa/17.1.69openalex-snapshot

The Insects of Australia

inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

inferredcites →https://doi.org/10.1093/bioinformatics/btm388openalex-snapshot

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

inferredcites →https://doi.org/10.1093/gbe/evq030openalex-snapshot

Ecdysozoan Mitogenomics: Evidence for a Common Origin of the Legged Invertebrates, the Panarthropoda

inferredcites →https://doi.org/10.1093/molbev/msh137openalex-snapshot

Genome-Scale Phylogeny and the Detection of Systematic Biases

inferredcites →https://doi.org/10.1093/molbev/msi179openalex-snapshot

A Retroposon Analysis of Afrotherian Phylogeny

inferredcites →https://doi.org/10.1093/molbev/msj021openalex-snapshot

Choosing Appropriate Substitution Models for the Phylogenetic Analysis of Protein-Coding Sequences

inferredcites →https://doi.org/10.1093/molbev/msl039openalex-snapshot

Testing the Molecular Clock: Molecular and Paleontological Estimates of Divergence Times in the Echinoidea (Echinodermata)

inferredcites →https://doi.org/10.1093/molbev/msl137openalex-snapshot

Lack of Resolution in the Animal Phylogeny: Closely Spaced Cladogeneses or Undetected Systematic Errors?

inferredcites →https://doi.org/10.1093/molbev/msl190openalex-snapshot

Heterogeneity in Regional GC Content and Differential Usage of Codons and Amino Acids in GC-Poor and GC-Rich Regions of the Genome of Apis mellifera

inferredcites →https://doi.org/10.1093/molbev/msm178openalex-snapshot

The Problem of Rooting Rapid Radiations

inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot

jModelTest: Phylogenetic Model Averaging

inferredcites →https://doi.org/10.1093/molbev/msp191openalex-snapshot

A Phylogenomic Approach to Resolve the Basal Pterygote Divergence

inferredcites →https://doi.org/10.1093/molbev/msq130openalex-snapshot

A Phylogenomic Approach to Resolve the Arthropod Tree of Life

inferredcites →https://doi.org/10.1093/oso/9780199535033.003.0004openalex-snapshot

Calibrating And Constraining Molecular Clocks

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003851openalex-snapshot

A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum-Likelihood Approach

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003874openalex-snapshot

Effects of Nucleotide Composition Bias on the Success of the Parsimony Criterion in Phylogenetic Inference

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025923openalex-snapshot

The effective population size of Anopheles gambiae in Kenya: implications for population structure

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot

Relationships between gene trees and species trees.

inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot

Cases in which Parsimony or Compatibility Methods will be Positively Misleading

inferredcites →https://doi.org/10.1093/sysbio/syp017openalex-snapshot

The Effect of Ambiguous Data on Phylogenetic Estimates Obtained by Maximum Likelihood and Bayesian Inference

inferredcites →https://doi.org/10.1093/sysbio/syq097openalex-snapshot

Taxon Sampling and the Optimal Rates of Evolution for Phylogenetic Inference

inferredcites →https://doi.org/10.1093/sysbio/syr025openalex-snapshot

Missing Data in Phylogenetic Analysis: Reconciling Results from Simulations and Empirical Data

inferredcites →https://doi.org/10.1093/sysbio/syr087openalex-snapshot

Calibrated Tree Priors for Relaxed Phylogenetics and Divergence Time Estimation

inferredcites →https://doi.org/10.1098/rsbl.2007.0102openalex-snapshot

Death of an order: a comprehensive molecular phylogenetic study confirms that termites are eusocial cockroaches

inferredcites →https://doi.org/10.1098/rspb.2004.2917openalex-snapshot

Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic

inferredcites →https://doi.org/10.1098/rspb.2010.0590openalex-snapshot

A congruent solution to arthropod phylogeny: phylogenomics, microRNAs and morphology support monophyletic Mandibulata

inferredcites →https://doi.org/10.1111/j.1096-0031.2000.tb00353.xopenalex-snapshot

A Review of Arthropod Phylogeny: New Data Based on Ribosomal DNA Sequences and Direct Character Optimization

inferredcites →https://doi.org/10.1111/j.1096-0031.2004.00040.xopenalex-snapshot

Mitochondrial genome data alone are not enough to unambiguously resolve the relationships of Entognatha, Insecta and Crustacea sensu lato (Arthropoda)

inferredcites →https://doi.org/10.1111/j.1096-0031.2005.00059.xopenalex-snapshot

A review of long‐branch attraction

inferredcites →https://doi.org/10.1111/j.1365-3113.2010.00526.xopenalex-snapshot

Direct optimization overly optimizes data

inferredcites →https://doi.org/10.1111/j.1558-5646.1995.tb02308.xopenalex-snapshot

INFERRING PHYLOGENIES FROM mt DNA VARIATION: MITOCHONDRIAL-GENE TREES VERSUS NUCLEAR-GENE TREES

inferredcites →https://doi.org/10.1126/science.1061697openalex-snapshot

A Phosphatocopid Crustacean with Appendages from the Lower Cambrian

inferredcites →https://doi.org/10.1126/science.1078607openalex-snapshot

Hexapod Origins: Monophyletic or Paraphyletic?

inferredcites →https://doi.org/10.1126/science.1086558openalex-snapshot

Comment on "Hexapod Origins: Monophyletic or Paraphyletic?"

inferredcites →https://doi.org/10.1126/science.273.5275.569openalex-snapshot

The Roots of Phylogeny

inferredcites →https://doi.org/10.1126/science.65.1685.374-aopenalex-snapshot

The Insects of Australia and New Zealand

inferredcites →https://doi.org/10.1139/z83-217openalex-snapshot

Origin of the insect wing and wing articulation from the arthropodan leg

inferredcites →https://doi.org/10.1139/z84-166openalex-snapshot

A new interpretation of dragonfly wing venation based upon Early Upper Carboniferous fossils from Argentina (Insecta: Odonatoidea) and basic character states in pterygote wings

inferredcites →https://doi.org/10.1146/annurev.en.39.010194.002233openalex-snapshot

Selective Factors in the Evolution of Insect Wings

inferredcites →https://doi.org/10.1146/annurev.ento.45.1.709openalex-snapshot

Phylogenetic System and Zoogeography of the Plecoptera

inferredcites →https://doi.org/10.1146/annurev.ento.53.103106.093304openalex-snapshot

Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis

inferredcites →https://doi.org/10.1146/annurev.ento.53.110106.153010openalex-snapshot

Threads and Serendipity in the Life and Research of an Entomologist

inferredcites →https://doi.org/10.1155/1930/16401openalex-snapshot

The Interpretation of the Wing Venation and Tracheation of theOdonata and Agnatha

inferredcites →https://doi.org/10.1159/000113317openalex-snapshot

The Evolution of Insect Flight: Implications for the Evolution of the Nervous System

inferredcites →https://doi.org/10.1186/1471-2105-3-15openalex-snapshot

Erratum to: The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs: Correction

inferredcites →https://doi.org/10.1186/1471-2105-3-2openalex-snapshot

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

inferredcites →https://doi.org/10.1186/1471-2148-11-152openalex-snapshot

PhyDesign: an online application for profiling phylogenetic informativeness

inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot

BEAST: Bayesian evolutionary analysis by sampling trees

inferredcites →https://doi.org/10.1186/1471-2148-7-s2-s8openalex-snapshot

Phylogenetic analysis of mitochondrial protein coding genes confirms the reciprocal paraphyly of Hexapoda and Crustacea

inferredcites →https://doi.org/10.1186/1471-2148-8-83openalex-snapshot

Revealing pancrustacean relationships: Phylogenetic analysis of ribosomal protein genes places Collembola (springtails) in a monophyletic Hexapoda and reinforces the discrepancy between mitochondrial and nuclear DNA markers

inferredcites →https://doi.org/10.1186/1471-2148-9-119openalex-snapshot

Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships

inferredcites →https://doi.org/10.1186/1475-2875-5-115openalex-snapshot

Effective population size of Anopheles funestus chromosomal forms in Burkina Faso

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A New Interpretation of the Oldest Fossil Bee (Hymenoptera: Apidae)

inferredcites →https://doi.org/10.1371/journal.pbio.0040088openalex-snapshot

Relaxed Phylogenetics and Dating with Confidence

inferredcites →https://doi.org/10.1371/journal.pbio.0040352openalex-snapshot

Bushes in the Tree of Life

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Dermaptera hindwing structure and folding: New evidence for familial, ordinal and superordinal relationships within Neoptera (Insecta)

inferredcites →https://doi.org/10.14411/eje.2002.019openalex-snapshot

Raphogla rubra gen. n., sp. n., the oldest representative of the clade of modern Ensifera (Orthoptera: Tettigoniidea, Gryllidea)

inferredcites →https://doi.org/10.2307/1483846openalex-snapshot

Treatise on Invertebrate Paleontology

inferredcites →https://doi.org/10.2307/2412281openalex-snapshot

Die Stammesgeschichte der Insekten.

inferredcites →https://doi.org/10.2307/2412923openalex-snapshot

Cases in which Parsimony or Compatibility Methods Will be Positively Misleading

inferredcites →https://doi.org/10.2307/2992396openalex-snapshot

A Framework for the Quantitative Study of Evolutionary Trees

inferredcites →https://doi.org/10.2307/sysbio/28.4.635openalex-snapshot

Arthropod Phylogeny with Special Reference to Insects

inferredcites →https://doi.org/10.3897/asp.64.e31642openalex-snapshot

A molecular phylogeny of Hexapoda

inferredcites →https://doi.org/10.5860/choice.29-6275openalex-snapshot

The Insects of Australia: a textbook for students and research workers

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Reanalyzing the Palaeoptera problem – The origin of insect flight remains obscure

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Power, resolution and bias: recent advances in insect phylogeny driven by the genomic revolution

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The Ephemeroptera (Hexapoda, Insecta) from the Lower Cretaceous Crato Formation (NE Brazil): a new genus and species, and reassessment of Costalimella zucchii Zamboni, 2001 and Cratogenites corradiniae Martins-Neto, 1996

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A time-calibrated ‘Tree of Life’ of aquatic insects for knitting historical patterns of evolution and measuring extant phylogenetic biodiversity across the world

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Genetic structural variation in mitochondrial genomes of four species of Gomphidae and their phylogenetic implications

inferred← citeshttps://doi.org/10.1016/j.isci.2021.103324openalex-snapshot

Evolutionary history and divergence times of Odonata (dragonflies and damselflies) revealed through transcriptomics

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Phylogenetic relationships and divergence times of Odonata inferred from mitochondrial genome

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The thorax of Eubleptus illuminates evolutionary history of winged insects

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Phylogenetic position of the bee genera Ancyla and Tarsalia (Hymenoptera: Apidae): A remarkable base compositional bias and an early Paleogene geodispersal from North America to the Old World

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Phylogenetic systematics and a revised generic classification of anthidiine bees (Hymenoptera: Megachilidae)

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Evolutionary history of Polyneoptera and its implications for our understanding of early winged insects

inferred← citeshttps://doi.org/10.1073/pnas.2614706123openalex-snapshot

Phylogenomics confirms Palaeoptera monophyly and illuminates the origin of winged insects

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History of dragonfly flight

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Revision of the giant pterygote insectBojophlebia prokopiKukalová-Peck, 1985 (Hydropalaeoptera: Bojophlebiidae) from the Carboniferous of the Czech Republic, with the first cladistic analysis of fossil palaeopterous insects

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The mitochondrial genome of Caenis sp. (Ephemeroptera: Caenidae) and the phylogeny of Ephemeroptera in Pterygota

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Illusion of flight? Absence, evidence and the age of winged insects

inferred← citeshttps://doi.org/10.1093/gbe/evz097openalex-snapshot

Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling

inferred← citeshttps://doi.org/10.1093/sysbio/syaa079openalex-snapshot

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Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies

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Progress, pitfalls and parallel universes: a history of insect phylogenetics

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Computational biomechanics changes our view on insect head evolution

inferred← citeshttps://doi.org/10.1101/164459openalex-snapshot

Using mitochondrial genomes to infer phylogenetic relationships among the oldest extant winged insects (Palaeoptera)

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Climatic niche evolution of infectious diseases driving amphibian declines

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A Way Through the Trees: Molecular Phylogenies Consistently Recover Two Clades of Aedes Mosquitoes

inferred← citeshttps://doi.org/10.1101/714048openalex-snapshot

Changes in gene expression during female reproductive development in a colour polymorphic insect

inferred← citeshttps://doi.org/10.1101/826552openalex-snapshot

Mind the Outgroup: Influence of Taxon Sampling on Total-Evidence Dating of Pimpliform Parasitoid Wasps (Hymenoptera, Ichneumonidae)

inferred← citeshttps://doi.org/10.1111/cla.12139openalex-snapshot

Early evolution of the hyperdiverse rove beetle tribe Staphylinini (Coleoptera: Staphylinidae: Staphylininae) and a revision of its higher classification

inferred← citeshttps://doi.org/10.1111/cla.12601openalex-snapshot

[genus]_[species]; Presenting phylogenies to facilitate synthesis

inferred← citeshttps://doi.org/10.1111/evo.13695openalex-snapshot

Forest giants on different evolutionary branches: Ecomorphological convergence in helicopter damselflies*

inferred← citeshttps://doi.org/10.1111/evo.13979openalex-snapshot

Changes in gene expression during female reproductive development in a color polymorphic insect

inferred← citeshttps://doi.org/10.1111/jzs.12533openalex-snapshot

Molecular phylogeny and systematic of the Schneider's skink Eumeces schneiderii (Daudin, 1802) (Squamata: Scincidae)

inferred← citeshttps://doi.org/10.1111/mec.13562openalex-snapshot

Not going with the flow: a comprehensive time‐calibrated phylogeny of dragonflies (Anisoptera: Odonata: Insecta) provides evidence for the role of lentic habitats on diversification

inferred← citeshttps://doi.org/10.1111/syen.12028openalex-snapshot

Insect phylogenomics: new insights on the relationships of lower neopteran orders ( P olyneoptera)

inferred← citeshttps://doi.org/10.1111/syen.12086openalex-snapshot

A large‐scale molecular phylogeny of flesh flies ( D iptera: S arcophagidae)

inferred← citeshttps://doi.org/10.1111/syen.12148openalex-snapshot

New Carboniferous fossils of Spilapteridae enlighten postembryonic wing development in Palaeodictyoptera

inferred← citeshttps://doi.org/10.1111/syen.12422openalex-snapshot

A multigene phylogeny and timeline for Trichoptera (Insecta)

inferred← citeshttps://doi.org/10.1139/cjb-2019-0109openalex-snapshot

Supermatrix analyses and molecular clock rooting of Fabales: Exploring the effects of outgroup choice and long branch attraction on topology

inferred← citeshttps://doi.org/10.1146/annurev-ento-011613-161958openalex-snapshot

Freshwater Biodiversity and Aquatic Insect Diversification

inferred← citeshttps://doi.org/10.1186/1471-2148-13-228openalex-snapshot

Is agriculture driving the diversification of the Bemisia tabaci species complex (Hemiptera: Sternorrhyncha: Aleyrodidae)?: Dating, diversification and biogeographic evidence revealed

inferred← citeshttps://doi.org/10.1186/1471-2148-13-237openalex-snapshot

The thorax musculature of Anisoptera (Insecta: Odonata) nymphs and its evolutionary relevance

inferred← citeshttps://doi.org/10.1206/0003-0090.459.1.1openalex-snapshot

Comparative Anatomy of the Insect Tracheal System Part 1: Introduction, Apterygotes, Paleoptera, Polyneoptera

inferred← citeshttps://doi.org/10.3390/insects10030062openalex-snapshot

Odonata: Who They Are and What They Have Done for Us Lately: Classification and Ecosystem Services of Dragonflies

inferred← citeshttps://doi.org/10.3390/insects10060170openalex-snapshot

Mayflies (Ephemeroptera) and Their Contributions to Ecosystem Services

inferred← citeshttps://doi.org/10.3390/insects12070656openalex-snapshot

Insight into the Phylogenetic Relationships among Three Subfamilies within Heptageniidae (Insecta: Ephemeroptera) along with Low-Temperature Selection Pressure Analyses Using Mitogenomes

inferred← citeshttps://doi.org/10.3390/v11040320openalex-snapshot

Protein Structure-Guided Hidden Markov Models (HMMs) as A Powerful Method in the Detection of Ancestral Endogenous Viral Elements

inferred← citeshttps://doi.org/10.47499/revistaaccb.v1i36.31openalex-snapshot

Composición y diversidad del orden Ephemeroptera (Arthropoda: Insecta) del Río Anaime (Cajamarca-Tolima).

inferred← citeshttps://doi.org/10.5772/33750openalex-snapshot

Biogeography of Dragonflies and Damselflies: Highly Mobile Predators

inferred← citeshttps://doi.org/10.7717/peerj.11402openalex-snapshot

Increasing 28 mitogenomes of Ephemeroptera, Odonata and Plecoptera support the Chiastomyaria hypothesis with three different outgroup combinations

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