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Revelation of the Genetic Basis for Convergent Innovative Anal Fin Pigmentation Patterns in Cichlid Fishes
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Homology — History of a Concept
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Homology, homoplasy, novelty, and behavior
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Development, homology and systematics
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Whole-genome duplication in teleost fishes and its evolutionary consequences
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The function of egg-spots in an African mouth-brooding cichlid fish
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Convergent Evolution within an Adaptive Radiation of Cichlid Fishes
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Zebrafish Stripes as a Model for Vertebrate Colour Pattern Formation
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Pleiotropic effects of coat colour-associated mutations in humans, mice and other mammals
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The gene regulatory logic of transcription factor evolution
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‘Egg-dummies’ as Natural Releasers in Mouth-breeding Cichlids
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The temporal requirement for endothelin receptor-B signalling during neural crest development
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Deep homology and the origins of evolutionary novelty
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The genomic substrate for adaptive radiation in African cichlid fish
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Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts
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The evolution of cichlid fish egg-spots is linked with a cis-regulatory change
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Pigment cell interactions and differential xanthophore recruitment underlying zebrafish stripe reiteration and Danio pattern evolution
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Orchestrating high-throughput genomic analysis with Bioconductor
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Adaptive evolution and explosive speciation: the cichlid fish model
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The developmental genetics of homology
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The genetic causes of convergent evolution
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Egg-spot pattern and body size asymmetries influence male aggression in haplochromine cichlid fishes
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PAML: a program package for phylogenetic analysis by maximum likelihood
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Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
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Moderated statistical tests for assessing differences in tag abundance
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The Sequence Alignment/Map format and SAMtools
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edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
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Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
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Small-sample estimation of negative binomial dispersion, with applications to SAGE data
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Comparative Transcriptomics of Eastern African Cichlid Fishes Shows Signs of Positive Selection and a Large Contribution of Untranslated Regions to Genetic Diversity
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
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Comparative Transcriptomics of Convergent Evolution: Different Genes but Conserved Pathways Underlie Caste Phenotypes across Lineages of Eusocial Insects
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KAAS: an automatic genome annotation and pathway reconstruction server
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Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
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Mutations in different pigmentation genes are associated with parallel melanism in island flycatchers
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The melanocortin system regulates body pigmentation and social behaviour in a colour polymorphic cichlid fish
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Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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A molecular mechanism for the origin of a key evolutionary innovation, the bird beak and palate, revealed by an integrative approach to major transitions in vertebrate history
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Variation of anal fin egg-spots along an environmental gradient in a haplochromine cichlid fish
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The interaction of sexually and naturally selected traits in the adaptive radiations of cichlid fishes
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The ecological and genetic basis of convergent thick‐lipped phenotypes in cichlid fishes
inferredcites →https://doi.org/10.1111/mec.13193openalex-snapshot
Effect of the MC 1R gene on sexual dimorphism in melanin‐based colorations
inferredcites →https://doi.org/10.1111/mec.13975openalex-snapshot
An allelic series at pax7a is associated with colour polymorphism diversity in Lake Malawi cichlid fish
inferredcites →https://doi.org/10.1111/pcmr.12332openalex-snapshot
Origins of adult pigmentation: diversity in pigment stem cell lineages and implications for pattern evolution
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A Single Amino Acid Mutation Contributes to Adaptive Beach Mouse Color Pattern
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Reaction-Diffusion Model as a Framework for Understanding Biological Pattern Formation
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Thyroid hormone–dependent adult pigment cell lineage and pattern in zebrafish
inferredcites →https://doi.org/10.1146/annurev-ento-010814-020942openalex-snapshot
Origin, Development, and Evolution of Butterfly Eyespots
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Novelty In Evolution: Restructuring The Concept
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Evolutionary history of the recruitment of conserved developmental genes in association to the formation and diversification of a novel trait
inferredcites →https://doi.org/10.1186/1471-2148-13-265openalex-snapshot
Regionalization of the axial skeleton in the ‘ambush predator’ guild – are there developmental rules underlying body shape evolution in ray-finned fishes?
inferredcites →https://doi.org/10.1186/1471-2148-5-17openalex-snapshot
Out of Tanganyika: Genesis, explosive speciation, key-innovations and phylogeography of the haplochromine cichlid fishes
inferredcites →https://doi.org/10.1186/1741-7007-5-51openalex-snapshot
Adaptive sequence evolution in a color gene involved in the formation of the characteristic egg-dummies of male haplochromine cichlid fishes
inferredcites →https://doi.org/10.1186/1745-6150-6-13openalex-snapshot
Nonsynonymous substitution rate (Ka) is a relatively consistent parameter for defining fast-evolving and slow-evolving protein-coding genes
inferredcites →https://doi.org/10.1186/gb-2004-5-10-r80openalex-snapshot
Bioconductor: open software development for computational biology and bioinformatics
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Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes
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Embryonic requirements for ErbB signaling in neural crest development and adult pigment pattern formation
inferredcites →https://doi.org/10.1242/dev.60.1.245openalex-snapshot
Has collagen a role in muscle pattern formation in the developing chick wing? 1. An immunofluorescence study
inferredcites →https://doi.org/10.1371/journal.pgen.1002788openalex-snapshot
Parallel Evolution of Auditory Genes for Echolocation in Bats and Toothed Whales
inferredcites →https://doi.org/10.1371/journal.pone.0029878openalex-snapshot
The Function of Anal Fin Egg-Spots in the Cichlid Fish Astatotilapia burtoni
inferredcites →https://doi.org/10.1371/journal.pone.0042955openalex-snapshot
Silencing of GPNMB by siRNA Inhibits the Formation of Melanosomes in Melanocytes in a MITF-Independent Fashion
inferredcites →https://doi.org/10.1371/journal.pone.0044096openalex-snapshot
Differential Role of Axin RGS Domain Function in Wnt Signaling during Anteroposterior Patterning and Maternal Axis Formation
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Cutadapt removes adapter sequences from high-throughput sequencing reads
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Homology, Genes, and Evolutionary Innovation
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Using Genetic Networks and Homology to Understand the Evolution of Phenotypic Traits
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Homology, Genes, and Evolutionary Innovation
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On the hodological criterion for homology
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Robustly detecting differential expression in RNA sequencing data using observation weights
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Evolution, the Extended Synthesis
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Gap junctions composed of connexins 41.8 and 39.4 are essential for colour pattern formation in zebrafish
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Effect of dietary astaxanthin on growth, body color, biochemical parameters and transcriptome profiling of juvenile blood parrotfish (Vieja melanurus ♀ × Amphilophus citrinellus ♂)
inferred← citeshttps://doi.org/10.1101/265538openalex-snapshot
Cluster expansion of apolipoprotein D (ApoD) genes in teleost fishes
inferred← citeshttps://doi.org/10.1111/pcmr.12766openalex-snapshot
Developmental and comparative transcriptomic identification of iridophore contribution to white barring in clownfish
inferred← citeshttps://doi.org/10.1186/s12862-018-1323-xopenalex-snapshot
Cluster expansion of apolipoprotein D (ApoD) genes in teleost fishes
inferred← citeshttps://doi.org/10.1186/s12864-020-6473-8openalex-snapshot
Comparative transcriptomics reveals candidate carotenoid color genes in an East African cichlid fish
inferred← citeshttps://doi.org/10.70675/bff4408czac03z4ba0zb5c8zdd2d48c0c537openalex-snapshot
Évolution des gènes de la pigmentation chez les Vertébrés et développement pigmentaire chez un modèle émergent de poisson corallien, le poisson-clown Amphiprion ocellaris
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