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Using MinION ™ to characterize dog skin microbiota through full-length 16S rRNA gene sequencing approach

https://doi.org/10.1101/167015
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00403-011-1189-xopenalex-snapshot
Comparison of bacterial microbiota in skin biopsies from normal and psoriatic skin
inferredcites →https://doi.org/10.1016/b978-0-12-407863-5.00019-8openalex-snapshot
Advancing Our Understanding of the Human Microbiome Using QIIME
inferredcites →https://doi.org/10.1016/j.cell.2014.03.011openalex-snapshot
Role of the Microbiota in Immunity and Inflammation
inferredcites →https://doi.org/10.1016/j.jaci.2016.07.029openalex-snapshot
Skin microbiome before development of atopic dermatitis: Early colonization with commensal staphylococci at 2 months is associated with a lower risk of atopic dermatitis at 1 year
inferredcites →https://doi.org/10.1016/j.jid.2016.01.023openalex-snapshot
Longitudinal Evaluation of the Skin Microbiome and Association with Microenvironment and Treatment in Canine Atopic Dermatitis
inferredcites →https://doi.org/10.1016/j.mimet.2013.08.009openalex-snapshot
Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples
inferredcites →https://doi.org/10.1016/j.mimet.2014.06.012openalex-snapshot
Improved performance of the PacBio SMRT technology for 16S rDNA sequencing
inferredcites →https://doi.org/10.1016/j.vetmic.2012.11.018openalex-snapshot
Metagenomic analysis of the canine oral cavity as revealed by high-throughput pyrosequencing of the 16S rRNA gene
inferredcites →https://doi.org/10.1016/j.vetmic.2015.09.003openalex-snapshot
A longitudinal assessment of changes in bacterial community composition associated with the development of periodontal disease in dogs
inferredcites →https://doi.org/10.1016/s0929-6646(07)60008-4openalex-snapshot
Cellulitis and Bacteremia Caused by Bergeyella zoohelcum
inferredcites →https://doi.org/10.1016/s1473-3099(09)70110-0openalex-snapshot
Bite-related and septic syndromes caused by cats and dogs
inferredcites →https://doi.org/10.1038/ismej.2011.139openalex-snapshot
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
inferredcites →https://doi.org/10.1038/ismej.2015.249openalex-snapshot
High-resolution phylogenetic microbial community profiling
inferredcites →https://doi.org/10.1038/jid.2013.21openalex-snapshot
Propionibacterium acnes Strain Populations in the Human Skin Microbiome Associated with Acne
inferredcites →https://doi.org/10.1038/nature08821openalex-snapshot
A human gut microbial gene catalogue established by metagenomic sequencing
inferredcites →https://doi.org/10.1038/nature11234openalex-snapshot
Structure, function and diversity of the healthy human microbiome
inferredcites →https://doi.org/10.1038/nature13786openalex-snapshot
Biogeography and individuality shape function in the human skin metagenome
inferredcites →https://doi.org/10.1038/nature18847openalex-snapshot
The microbiome and innate immunity
inferredcites →https://doi.org/10.1038/nbt.4045openalex-snapshot
Retrieval of a million high-quality, full-length microbial 16S and 18S rRNA gene sequences without primer bias
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1038/nmicrobiol.2016.106openalex-snapshot
Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare
inferredcites →https://doi.org/10.1038/nrg3129openalex-snapshot
Experimental and analytical tools for studying the human microbiome
inferredcites →https://doi.org/10.1038/nrmicro3330openalex-snapshot
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
inferredcites →https://doi.org/10.1038/s41598-017-05772-5openalex-snapshot
A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer
inferredcites →https://doi.org/10.1038/srep29681openalex-snapshot
Analysis of the mouse gut microbiome using full-length 16S rRNA amplicon sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btp636openalex-snapshot
PyNAST: a flexible tool for aligning sequences to a template alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btr087openalex-snapshot
PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers
inferredcites →https://doi.org/10.1093/bioinformatics/btu590openalex-snapshot
poRe: an R package for the visualization and analysis of nanopore sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btv540openalex-snapshot
NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
inferredcites →https://doi.org/10.1093/gigascience/gix043openalex-snapshot
Multi-locus and long amplicon sequencing approach to study microbial diversity at species level using the MinION™ portable nanopore sequencer
inferredcites →https://doi.org/10.1093/nar/gks808openalex-snapshot
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
inferredcites →https://doi.org/10.1101/099960openalex-snapshot
Evaluation of Oxford Nanopore MinION TM Sequencing for 16S rRNA Microbiome Characterization
inferredcites →https://doi.org/10.1101/132274openalex-snapshot
Reading canonical and modified nucleotides in 16S ribosomal RNA using nanopore direct RNA sequencing
inferredcites →https://doi.org/10.1101/gr.113985.110openalex-snapshot
Adaptive seeds tame genomic sequence comparison
inferredcites →https://doi.org/10.1101/gr.131029.111openalex-snapshot
Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis
inferredcites →https://doi.org/10.1101/gr.159467.113openalex-snapshot
The altered landscape of the human skin microbiome in patients with primary immunodeficiencies
inferredcites →https://doi.org/10.1111/exd.13296openalex-snapshot
Skin microbiome and acne vulgaris : Staphylococcus , a new actor in acne
inferredcites →https://doi.org/10.1111/j.1348-0421.2007.tb03983.xopenalex-snapshot
Biological and Genetic Classification of Canine Intestinal Lactic Acid Bacteria and Bifidobacteria
inferredcites →https://doi.org/10.1111/vde.12366openalex-snapshot
The skin microbiome in allergen‐induced canine atopic dermatitis
inferredcites →https://doi.org/10.1126/science.1177486openalex-snapshot
Bacterial Community Variation in Human Body Habitats Across Space and Time
inferredcites →https://doi.org/10.1126/science.1260144openalex-snapshot
Dialogue between skin microbiota and immunity
inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
inferredcites →https://doi.org/10.1128/aem.03006-05openalex-snapshot
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
inferredcites →https://doi.org/10.1128/aem.62.10.3557-3559.1996openalex-snapshot
The oligonucleotide probe database
inferredcites →https://doi.org/10.1128/cmr.17.4.840-862.2004openalex-snapshot
Impact of 16S rRNA Gene Sequence Analysis for Identification of Bacteria on Clinical Microbiology and Infectious Diseases
inferredcites →https://doi.org/10.1128/jcm.31.9.2456-2466.1993openalex-snapshot
Neisseria weaveri sp. nov., formerly CDC group M-5, a gram-negative bacterium associated with dog bite wounds
inferredcites →https://doi.org/10.1128/jcm.40.8.2779-2785.2002openalex-snapshot
Phylogenetic Analysis of Salmonella , Shigella , and Escherichia coli Strains on the Basis of the gyrB Gene Sequence
inferredcites →https://doi.org/10.1186/1471-2180-12-66openalex-snapshot
Coverage evaluation of universal bacterial primers using the metagenomic datasets
inferredcites →https://doi.org/10.1186/1476-0711-10-28openalex-snapshot
Exploring internal features of 16S rRNA gene for identification of clinically relevant species of the genus Streptococcus
inferredcites →https://doi.org/10.1186/2049-2618-1-10openalex-snapshot
Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform
inferredcites →https://doi.org/10.1186/2049-2618-1-31openalex-snapshot
Community differentiation of the cutaneous microbiota in psoriasis
inferredcites →https://doi.org/10.1186/s12866-016-0891-4openalex-snapshot
Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification
inferredcites →https://doi.org/10.1186/s13742-016-0111-zopenalex-snapshot
Species-level resolution of 16S rRNA gene amplicons sequenced through the MinION™ portable nanopore sequencer
inferredcites →https://doi.org/10.1186/s40168-015-0094-5openalex-snapshot
The vocabulary of microbiome research: a proposal
inferredcites →https://doi.org/10.1371/journal.pone.0002719openalex-snapshot
Substantial Alterations of the Cutaneous Bacterial Biota in Psoriatic Lesions
inferredcites →https://doi.org/10.1371/journal.pone.0049755openalex-snapshot
The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data
inferredcites →https://doi.org/10.1371/journal.pone.0083197openalex-snapshot
The Skin Microbiome in Healthy and Allergic Dogs
inferredcites →https://doi.org/10.3389/fvets.2017.00006openalex-snapshot
Individual Signatures Define Canine Skin Microbiota Composition and Variability
inferredcites →https://doi.org/10.3402/jom.v6.25468openalex-snapshot
Host-associated bacterial taxa from Chlorobi, Chloroflexi, GN02, Synergistetes, SR1, TM7, and WPS-2 Phyla/candidate divisions
inferredcites →https://doi.org/10.3920/bm2012.0048openalex-snapshot
In vitro assessment of functional properties of lactic acid bacteria isolated from faecal microbiota of healthy dogs for potential use as probiotics
inferredcites →https://doi.org/10.7717/peerj.1869openalex-snapshot
Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
inferredcites →https://doi.org/10.7717/peerj.2584openalex-snapshot
VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1016/j.aquaculture.2019.01.036openalex-snapshot
Viral infections in tilapines: More than just tilapia lake virus
inferred← citeshttps://doi.org/10.1016/j.csbj.2020.01.005openalex-snapshot
Computational methods for 16S metabarcoding studies using Nanopore sequencing data
inferred← citeshttps://doi.org/10.1093/gigascience/giy140openalex-snapshot
NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform
inferred← citeshttps://doi.org/10.1101/2019.12.20.884395openalex-snapshot
Applying Nanopore sequencing to a One-Health scenario for colistin resistance transmission among pigs, cows and the farmer
inferred← citeshttps://doi.org/10.1101/2019.12.21.886028openalex-snapshot
Long reads from Nanopore sequencing as a tool for animal microbiome studies
inferred← citeshttps://doi.org/10.1101/2020.09.30.320226openalex-snapshot
Bac-PULCE: Bacterial Strain and AMR Profiling Using Long Reads via CRISPR Enrichment
inferred← citeshttps://doi.org/10.1101/2021.07.28.454187openalex-snapshot
Molecular surveillance of zoonotic bacterial pathogens in farm dwelling peridomestic rodents across the upper Midwest, USA
inferred← citeshttps://doi.org/10.1101/581728openalex-snapshot
Genomics in the jungle: using portable sequencing as a teaching tool in field courses
inferred← citeshttps://doi.org/10.1128/msystems.01279-25openalex-snapshot
Longitudinal long-read microbiome profiling in a canine model reveals how age, diet, and birth mode shape gut community dynamics
inferred← citeshttps://doi.org/10.12688/f1000research.16817.1openalex-snapshot
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and whole rrn operon
inferred← citeshttps://doi.org/10.12688/f1000research.16817.2openalex-snapshot
Microbiota profiling with long amplicons using Nanopore sequencing: full-length 16S rRNA gene and the 16S-ITS-23S of the rrn operon
inferred← citeshttps://doi.org/10.17605/osf.io/2f8w7openalex-snapshot
Preprint - Applying Nanopore sequencing to a One-Health scenario for colistin resistance transmission among pigs, cows and the farmer
inferred← citeshttps://doi.org/10.3168/jds.2019-17359openalex-snapshot
Short communication: Milk microbiota profiling on water buffalo with full-length 16S rRNA using nanopore sequencing
inferred← citeshttps://doi.org/10.3390/cimb46050237openalex-snapshot
Meat-Borne-Parasite: A Nanopore-Based Meta-Barcoding Work-Flow for Parasitic Microbiodiversity Assessment in the Wild Fauna of French Guiana
inferred← citeshttps://doi.org/10.3390/genes11091105openalex-snapshot
Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota
inferred← citeshttps://doi.org/10.3390/ijms21010298openalex-snapshot
Targeting the 16S rRNA Gene for Bacterial Identification in Complex Mixed Samples: Comparative Evaluation of Second (Illumina) and Third (Oxford Nanopore Technologies) Generation Sequencing Technologies
inferred← citeshttps://doi.org/10.3390/ijms24097867openalex-snapshot
Characterization of Seminal Microbiome of Infertile Idiopathic Patients Using Third-Generation Sequencing Platform
inferred← citeshttps://doi.org/10.3390/pathogens10091183openalex-snapshot
Nanopore-Based Surveillance of Zoonotic Bacterial Pathogens in Farm-Dwelling Peridomestic Rodents
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