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Genomics in the jungle: using portable sequencing as a teaching tool in field courses

https://doi.org/10.1101/581728
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Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-1-61779-591-6openalex-snapshot
DNA Barcodes
inferredcites →https://doi.org/10.1007/s10646-017-1869-1openalex-snapshot
Mercury concentrations in bats (Chiroptera) from a gold mining area in the Peruvian Amazon
inferredcites →https://doi.org/10.1016/j.anbehav.2005.10.001openalex-snapshot
Guidelines for the treatment of animals in behavioural research and teaching
inferredcites →https://doi.org/10.1016/j.anbehav.2011.10.031openalex-snapshot
Guidelines for the treatment of animals in behavioural research and teaching
inferredcites →https://doi.org/10.1016/j.envpol.2018.01.109openalex-snapshot
Presence of artisanal gold mining predicts mercury bioaccumulation in five genera of bats (Chiroptera)
inferredcites →https://doi.org/10.1038/nature22401openalex-snapshot
Establishment and cryptic transmission of Zika virus in Brazil and the Americas
inferredcites →https://doi.org/10.1038/nbt.4060openalex-snapshot
Nanopore sequencing and assembly of a human genome with ultra-long reads
inferredcites →https://doi.org/10.1038/nprot.2017.066openalex-snapshot
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples
inferredcites →https://doi.org/10.1073/pnas.0406166101openalex-snapshot
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator
inferredcites →https://doi.org/10.1093/bioinformatics/bty149openalex-snapshot
NanoPack: visualizing and processing long-read sequencing data
inferredcites →https://doi.org/10.1093/biosci/bix036openalex-snapshot
Teaching Biology in the Field: Importance, Challenges, and Solutions
inferredcites →https://doi.org/10.1093/gigascience/giy033openalex-snapshot
Real-time DNA barcoding in a rainforest using nanopore sequencing: opportunities for rapid biodiversity assessments and local capacity building
inferredcites →https://doi.org/10.1093/gigascience/giz006openalex-snapshot
Nanopore sequencing of long ribosomal DNA amplicons enables portable and simple biodiversity assessments with high phylogenetic resolution across broad taxonomic scale
inferredcites →https://doi.org/10.1093/jxb/erx289openalex-snapshot
A world of opportunities with nanopore sequencing
inferredcites →https://doi.org/10.1093/nar/gks808openalex-snapshot
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
inferredcites →https://doi.org/10.1101/030742openalex-snapshot
What’s in my pot? Real-time species identification on the MinION™
inferredcites →https://doi.org/10.1101/035303openalex-snapshot
Integration of mobile sequencers in an academic classroom
inferredcites →https://doi.org/10.1101/167015openalex-snapshot
Using MinION ™ to characterize dog skin microbiota through full-length 16S rRNA gene sequencing approach
inferredcites →https://doi.org/10.1101/227439openalex-snapshot
Oxford Nanopore sequencing in a research-based undergraduate course
inferredcites →https://doi.org/10.1111/1755-0998.12273openalex-snapshot
Sim RAD : an R package for simulation‐based prediction of the number of loci expected in RAD seq and similar genotyping by sequencing approaches
inferredcites →https://doi.org/10.1111/1755-0998.12771openalex-snapshot
Double‐digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: A proof of concept in a highly promiscuous bird
inferredcites →https://doi.org/10.1111/1755-0998.12890openalex-snapshot
A Min ION ™‐based pipeline for fast and cost‐effective DNA barcoding
inferredcites →https://doi.org/10.1111/eva.12337openalex-snapshot
The conservation genetics juggling act: integrating genetics and ecology, science and policy
inferredcites →https://doi.org/10.1111/eva.12661openalex-snapshot
Next‐generation conservation genetics and biodiversity monitoring
inferredcites →https://doi.org/10.1126/science.351.6275.800openalex-snapshot
Pocket DNA sequencers make real-time diagnostics a reality
inferredcites →https://doi.org/10.1186/s12915-014-0087-zopenalex-snapshot
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
inferredcites →https://doi.org/10.1371/journal.pone.0087624openalex-snapshot
Characterization of the 18S rRNA Gene for Designing Universal Eukaryote Specific Primers
inferredcites →https://doi.org/10.1371/journal.pone.0095567openalex-snapshot
Systematic Design of 18S rRNA Gene Primers for Determining Eukaryotic Diversity in Microbial Consortia
inferredcites →https://doi.org/10.1644/06-mamm-f-185r1.1openalex-snapshot
Guidelines of the American Society of Mammalogists for the Use of Wild Mammals in Research
inferredcites →https://doi.org/10.1644/10-mamm-f-355.1openalex-snapshot
Guidelines of the American Society of Mammalogists for the use of wild mammals in research
inferredcites →https://doi.org/10.17504/protocols.io.mrvc566openalex-snapshot
Ultra-long read sequencing protocol for RAD004 v2
inferredcites →https://doi.org/10.17504/protocols.io.mrxc57nopenalex-snapshot
Ultra-long read sequencing protocol for RAD004 v3
inferredcites →https://doi.org/10.17504/protocols.io.y2efybeopenalex-snapshot
ddRADSeq in a Field Setting v3
inferredcites →https://doi.org/10.17504/protocols.io.y2ffybnopenalex-snapshot
16S Metagenomics in a Field Setting v1
inferredcites →https://doi.org/10.17504/protocols.io.y2ifyceopenalex-snapshot
18S Metagenomics in a Field Setting v1
inferredcites →https://doi.org/10.17504/protocols.io.y2sfyeeopenalex-snapshot
DNA Barcoding in a Field Setting v1
inferredcites →https://doi.org/10.2307/2388342openalex-snapshot
The Arboreal Ant Fauna of Peruvian Amazon Forests: A First Assessment
inferredcites →https://doi.org/10.3201/eid2202.151796openalex-snapshot
Nanopore Sequencing as a Rapidly Deployable Ebola Outbreak Tool
inferredcites →https://doi.org/10.46325/gabj.v2i2.124openalex-snapshot
The ongoing transition at an exponential speed from Conservation genetics to Conservation genomics
inferredcites →https://doi.org/10.5962/bhl.title.143318openalex-snapshot
Use of "Lysis Buffer" in DNA isolation and its implication for museum collections
inferredcites →https://doi.org/10.62015/np.2015.v22.138openalex-snapshot
A field protocol for the capture and release of callitrichids

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ajp.23063openalex-snapshot
A multiyear survey of helminths from wild saddleback ( Leontocebus weddelli ) and emperor ( Saguinus imperator ) tamarins
inferred← citeshttps://doi.org/10.1002/ppp3.70087openalex-snapshot
A workflow for practical training in plant genomics using Oxford Nanopore long‐read sequencing
inferred← citeshttps://doi.org/10.1007/s10592-020-01296-0openalex-snapshot
Next-generation technologies applied to age-old challenges in Madagascar
inferred← citeshttps://doi.org/10.1093/oso/9780198850243.003.0007openalex-snapshot
Field and laboratory analysis for non-invasive wildlife and habitat health assessment and conservation
inferred← citeshttps://doi.org/10.1101/2024.09.03.610948openalex-snapshot
A workflow for practical training in ecological genomics using Oxford Nanopore long-read sequencing
inferred← citeshttps://doi.org/10.1101/650614openalex-snapshot
Next-generation in situ conservation and educational outreach in Madagascar using a mobile genetics lab
inferred← citeshttps://doi.org/10.1128/jmbe.00142-21openalex-snapshot
The Diverse World of Protists—an Ideal Community with which to Introduce Microscopy in the Microbiology Teaching Laboratory
inferred← citeshttps://doi.org/10.1371/journal.pbio.3000667openalex-snapshot
Portable sequencing as a teaching tool in conservation and biodiversity research
inferred← citeshttps://doi.org/10.14712/23362936.2021.10openalex-snapshot
Salmonella Paratyphi Infection: Use of Nanopore Sequencing as a Vivid Alternative for the Identification of Invading Bacteria
inferred← citeshttps://doi.org/10.1534/g3.120.401205openalex-snapshot
Improving the Chromosome-Level Genome Assembly of the Siamese Fighting Fish ( Betta splendens ) in a University Master’s Course
inferred← citeshttps://doi.org/10.3390/genes10110858openalex-snapshot
Genetic Biomonitoring and Biodiversity Assessment Using Portable Sequencing Technologies: Current Uses and Future Directions
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