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Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1097-0231(199611)10:14<1789::aid-rcm752>3.0.co;2-6openalex-snapshot
Determination of 8-Hydroxydeoxyguanosine in Biological Tissue by Liquid Chromatography/Electrospray Ionization-Mass Spectrometry/Mass Spectrometry
inferredcites →https://doi.org/10.1002/bies.201200150openalex-snapshot
Non‐random mutation: The evolution of targeted hypermutation and hypomutation
inferredcites →https://doi.org/10.1016/0092-8674(87)90577-0openalex-snapshot
Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine·guanine base pairs
inferredcites →https://doi.org/10.1016/j.dnarep.2004.06.008openalex-snapshot
Transcription activities at 8-oxoG lesions in DNA
inferredcites →https://doi.org/10.1016/j.dnarep.2010.09.008openalex-snapshot
Factors that influence telomeric oxidative base damage and repair by DNA glycosylase OGG1
inferredcites →https://doi.org/10.1016/j.dnarep.2016.12.010openalex-snapshot
Repair of Oxidative DNA Damage in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1016/j.dnarep.2017.08.010openalex-snapshot
Human OGG1 activity in nucleosomes is facilitated by transient unwrapping of DNA and is influenced by the local histone environment
inferredcites →https://doi.org/10.1016/j.tibs.2010.02.001openalex-snapshot
The interface between transcription and mechanisms maintaining genome integrity
inferredcites →https://doi.org/10.1016/j.tox.2013.05.006openalex-snapshot
An automated Fpg-based FADU method for the detection of oxidative DNA lesions and screening of antioxidants
inferredcites →https://doi.org/10.1016/s0021-9258(18)48474-8openalex-snapshot
8-Hydroxyguanine, an abundant form of oxidative DNA damage, causes G-T and A-C substitutions.
inferredcites →https://doi.org/10.1021/bi00129a020openalex-snapshot
A novel sensitive and specific assay for abasic sites, the most commonly produced DNA lesion
inferredcites →https://doi.org/10.1021/jacs.7b04131openalex-snapshot
5-Formyl- and 5-Carboxydeoxycytidines Do Not Cause Accumulation of Harmful Repair Intermediates in Stem Cells
inferredcites →https://doi.org/10.1038/349431a0openalex-snapshot
Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
inferredcites →https://doi.org/10.1038/362709a0openalex-snapshot
Instability and decay of the primary structure of DNA
inferredcites →https://doi.org/10.1038/nature10995openalex-snapshot
Evidence of non-random mutation rates suggests an evolutionary risk management strategy
inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot
An integrated encyclopedia of DNA elements in the human genome
inferredcites →https://doi.org/10.1038/nature11273openalex-snapshot
Chromatin organization is a major influence on regional mutation rates in human cancer cells
inferredcites →https://doi.org/10.1038/nature12477openalex-snapshot
Signatures of mutational processes in human cancer
inferredcites →https://doi.org/10.1038/nature14176openalex-snapshot
Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation
inferredcites →https://doi.org/10.1038/nature14183openalex-snapshot
Lagging-strand replication shapes the mutational landscape of the genome
inferredcites →https://doi.org/10.1038/nature14221openalex-snapshot
Cell-of-origin chromatin organization shapes the mutational landscape of cancer
inferredcites →https://doi.org/10.1038/nature17437openalex-snapshot
Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes
inferredcites →https://doi.org/10.1038/nature17661openalex-snapshot
Nucleotide excision repair is impaired by binding of transcription factors to DNA
inferredcites →https://doi.org/10.1038/nature25179openalex-snapshot
Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators
inferredcites →https://doi.org/10.1038/ng.3335openalex-snapshot
CTCF/cohesin-binding sites are frequently mutated in cancer
inferredcites →https://doi.org/10.1038/ng.3991openalex-snapshot
Reduced mutation rate in exons due to differential mismatch repair
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.3965openalex-snapshot
rG4-seq reveals widespread formation of G-quadruplex structures in the human transcriptome
inferredcites →https://doi.org/10.1038/nrg3296openalex-snapshot
DNA secondary structures: stability and function of G-quadruplex structures
inferredcites →https://doi.org/10.1038/nsmb.3319openalex-snapshot
Oxidative guanine base damage regulates human telomerase activity
inferredcites →https://doi.org/10.1073/pnas.1619809114openalex-snapshot
Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair
inferredcites →https://doi.org/10.1073/pnas.36.6.344openalex-snapshot
The origin and behavior of mutable loci in maize
inferredcites →https://doi.org/10.1073/pnas.97.1.103openalex-snapshot
Clustered DNA damages induced in isolated DNA and in human cells by low doses of ionizing radiation
inferredcites →https://doi.org/10.1074/jbc.m112.397786openalex-snapshot
DNA Sequence Context Effects on the Glycosylase Activity of Human 8-Oxoguanine DNA Glycosylase
inferredcites →https://doi.org/10.1093/bioinformatics/btp328openalex-snapshot
rtracklayer: an R package for interfacing with genome browsers
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/carcin/7.11.1849openalex-snapshot
Formation of 8-hydroxyguanine moiety in cellular DNA by agents producing oxygen radicals and evidence for its repair
inferredcites →https://doi.org/10.1093/dnares/dsu023openalex-snapshot
Genome-wide Profiling of 8-Oxoguanine Reveals Its Association with Spatial Positioning in Nucleus
inferredcites →https://doi.org/10.1093/gbe/evx164openalex-snapshot
Functional Mechanisms of Microsatellite DNA in Eukaryotic Genomes
inferredcites →https://doi.org/10.1093/nar/29.10.2117openalex-snapshot
A reliable assessment of 8-oxo-2-deoxyguanosine levels in nuclear and mitochondrial DNA using the sodium iodide method to isolate DNA
inferredcites →https://doi.org/10.1093/nar/gkj522openalex-snapshot
Gamma radiation increases endonuclease-dependent L1 retrotransposition in a cultured cell assay
inferredcites →https://doi.org/10.1093/nar/gkq170openalex-snapshot
Gene silencing induced by oxidative DNA base damage: association with local decrease of histone H4 acetylation in the promoter region
inferredcites →https://doi.org/10.1093/nar/gkt731openalex-snapshot
Replication fork collapse is a major cause of the high mutation frequency at three-base lesion clusters
inferredcites →https://doi.org/10.1093/nar/gkw006openalex-snapshot
Re-evaluation of G-quadruplex propensity with G4Hunter
inferredcites →https://doi.org/10.1093/nar/gkw473openalex-snapshot
Widespread transcriptional gene inactivation initiated by a repair intermediate of 8-oxoguanine
inferredcites →https://doi.org/10.1093/toxsci/kfq371openalex-snapshot
Endogenous versus Exogenous DNA Adducts: Their Role in Carcinogenesis, Epidemiology, and Risk Assessment
inferredcites →https://doi.org/10.1101/190330openalex-snapshot
The whole-genome panorama of cancer drivers
inferredcites →https://doi.org/10.1101/gr.178335.114openalex-snapshot
Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition
inferredcites →https://doi.org/10.1101/gr.225771.117openalex-snapshot
Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity
inferredcites →https://doi.org/10.1101/gr.2745804openalex-snapshot
The human L1 promoter: Variable transcription initiation sites and a major impact of upstream flanking sequence on promoter activity
inferredcites →https://doi.org/10.1101/gr.4769606openalex-snapshot
A genome-wide distribution of 8-oxoguanine correlates with the preferred regions for recombination and single nucleotide polymorphism in the human genome
inferredcites →https://doi.org/10.1126/science.7678468openalex-snapshot
The Directed Mutation Controversy and Neo-Darwinism
inferredcites →https://doi.org/10.1152/ajplung.00236.2015openalex-snapshot
An oxidative DNA “damage” and repair mechanism localized in the VEGF promoter is important for hypoxia-induced VEGF mRNA expression
inferredcites →https://doi.org/10.1186/gb-2012-13-8-r69openalex-snapshot
Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase
inferredcites →https://doi.org/10.1186/gb-2012-13-8-r77openalex-snapshot
ggbio: an R package for extending the grammar of graphics for genomic data
inferredcites →https://doi.org/10.1186/s12859-019-2851-0openalex-snapshot
TelomereHunter – in silico estimation of telomere content and composition from cancer genomes
inferredcites →https://doi.org/10.1186/s13059-016-0974-4openalex-snapshot
The Ensembl Variant Effect Predictor
inferredcites →https://doi.org/10.1186/s13059-016-1001-5openalex-snapshot
In vivo genome-wide profiling reveals a tissue-specific role for 5-formylcytosine
inferredcites →https://doi.org/10.1562/0031-8655(2002)0750257daaoan2.0.co2openalex-snapshot
Development and Application of a Novel Immunoassay for Measuring Oxidative DNA Damage in the Environment¶
inferredcites →https://doi.org/10.2174/156652412800792651openalex-snapshot
Oxidatively Generated DNA Lesions as Potential Biomarkers of In Vivo Oxidative Stress
inferredcites →https://doi.org/10.3390/ijms150916975openalex-snapshot
The Role of 8-Oxoguanine DNA Glycosylase-1 in Inflammation
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/jez.b.23292openalex-snapshot
Noncanonical Nucleotides in the Genome Around the Maternal‐Zygotic Transition
inferred← citeshttps://doi.org/10.1093/nar/gkae252openalex-snapshot
Mutation rate heterogeneity at the sub-gene scale due to local DNA hypomethylation
inferred← citeshttps://doi.org/10.1186/s13059-018-1582-2openalex-snapshot
Genomic landscape of oxidative DNA damage and repair reveals regioselective protection from mutagenesis
inferred← citeshttps://doi.org/10.1787/399d2c34-enopenalex-snapshot
Oxidative DNA damage leading to chromosomal aberrations and mutations
inferred← citeshttps://doi.org/10.25148/etd.fidc009202openalex-snapshot
Formation and Repair of Environmentally-induced damage to Mitochondrial and Nuclear Genomes
inferred← citeshttps://doi.org/10.7150/jca.72893openalex-snapshot
Construction of a novel radiosensitivity- and ferroptosis-associated gene signature for prognosis prediction in gliomas
inferred← citeshttps://doi.org/10.7150/thno.79535openalex-snapshot
Role of primary aging hallmarks in Alzheimer´s disease
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