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Multispecies coalescent analysis unravels the non-monophyly and controversial relationships of Hexapoda

https://doi.org/10.1101/187997
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Outgoing claims: the papers this work cites, builds on, or argues with.

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The coalescent
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ASTRAL: genome-scale coalescent-based species tree estimation
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An Improved General Amino Acid Replacement Matrix
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A Phylogenomic Approach to Resolve the Arthropod Tree of Life
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Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda
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Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
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Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
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Relationships between gene trees and species trees.
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The Strepsiptera Problem: Phylogeny of the Holometabolous Insect Orders Inferred from 18S and 28S Ribosomal DNA Sequences and Morphology
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Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies
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MICROEVOLUTIONARY PROCESSES GENERATE PHYLOGENOMIC DISCORDANCE AT ANCIENT DIVERGENCES
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Endopterygote systematics – where do we stand and what is the goal (Hexapoda, Arthropoda)?
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A mitochondrial genome phylogeny of the Neuropterida (lace‐wings, alderflies and snakeflies) and their relationship to the other holometabolous insect orders
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IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
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Population genomics of eusocial insects: the costs of a vertebrate‐like effective population size
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Estimating phylogenetic trees from genome‐scale data
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The beetle tree of life reveals that C oleoptera survived end‐ P ermian mass extinction to diversify during the C retaceous terrestrial revolution
inferredcites →https://doi.org/10.1126/science.1253451openalex-snapshot
Whole-genome analyses resolve early branches in the tree of life of modern birds
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Phylogenomics resolves the timing and pattern of insect evolution
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A Molecular Phylogeny of Reptiles
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The mitochondrial genome of a stick insect Extatosoma tiaratum (Phasmatodea) and the phylogeny of polyneopteran insects
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Advances in Insect Phylogeny at the Dawn of the Postgenomic Era
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Ancient Rapid Radiations of Insects: Challenges for Phylogenetic Analysis
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Molecular phylogenetic analyses support the monophyly of Hexapoda and suggest the paraphyly of Entognatha
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The evolutionary history of holometabolous insects inferred from transcriptome-based phylogeny and comprehensive morphological data
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The compact mitochondrial genome of Zorotypus medoensis provides insights into phylogenetic position of Zoraptera
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BBCA: Improving the scalability of *BEAST using random binning
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Single-copy nuclear genes resolve the phylogeny of the holometabolous insects
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Phylogenetic analyses suggest that diversification and body size evolution are independent in insects
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Prevention of Catheter-Related Bacteremia with a Daily Ethanol Lock in Patients with Tunnelled Catheters: A Randomized, Placebo-Controlled Trial
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9-Genes Reinforce the Phylogeny of Holometabola and Yield Alternate Views on the Phylogenetic Placement of Strepsiptera
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Complete Mitochondrial Genome of the Free-Living Earwig, Challia fletcheri (Dermaptera: Pygidicranidae) and Phylogeny of Polyneoptera
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The First Mitochondrial Genome for the Fishfly Subfamily Chauliodinae and Implications for the Higher Phylogeny of Megaloptera
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Positive Outcomes Influence the Rate and Time to Publication, but Not the Impact Factor of Publications of Clinical Trial Results
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Ancestral Gene Organization in the Mitochondrial Genome of Thyridosmylus langii (McLachlan, 1870) (Neuroptera: Osmylidae) and Implications for Lacewing Evolution
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Strepsiptera, Phylogenomics and the Long Branch Attraction Problem
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A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway
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The First Mitochondrial Genomes of Antlion (Neuroptera: Myrmeleontidae) and Split-footed Lacewing (Neuroptera: Nymphidae), with Phylogenetic Implications of Myrmeleontiformia
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