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Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-0-387-09550-9_2openalex-snapshot
The Commensal Microbiology of the Gastrointestinal Tract
inferredcites →https://doi.org/10.1016/j.tig.2015.10.003openalex-snapshot
Metagenome Analysis Exploiting High-Throughput Chromosome Conformation Capture (3C) Data
inferredcites →https://doi.org/10.1016/j.ymeth.2017.04.004openalex-snapshot
Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation
inferredcites →https://doi.org/10.1016/s0168-9525(01)02447-7openalex-snapshot
Deletional bias and the evolution of bacterial genomes
inferredcites →https://doi.org/10.1038/nature07540openalex-snapshot
A core gut microbiome in obese and lean twins
inferredcites →https://doi.org/10.1038/nature08821openalex-snapshot
A human gut microbial gene catalogue established by metagenomic sequencing
inferredcites →https://doi.org/10.1038/nature11234openalex-snapshot
Structure, function and diversity of the healthy human microbiome
inferredcites →https://doi.org/10.1038/nature12352openalex-snapshot
Insights into the phylogeny and coding potential of microbial dark matter
inferredcites →https://doi.org/10.1038/nbt.2579openalex-snapshot
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
inferredcites →https://doi.org/10.1038/nbt.3519openalex-snapshot
Near-optimal probabilistic RNA-seq quantification
inferredcites →https://doi.org/10.1038/nbt.3893openalex-snapshot
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
inferredcites →https://doi.org/10.1073/pnas.0914470107openalex-snapshot
Enigmatic, ultrasmall, uncultivated Archaea
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq484openalex-snapshot
Circoletto: visualizing sequence similarity with Circos
inferredcites →https://doi.org/10.1093/bioinformatics/bts174openalex-snapshot
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
inferredcites →https://doi.org/10.1093/bioinformatics/btt509openalex-snapshot
Infernal 1.1: 100-fold faster RNA homology searches
inferredcites →https://doi.org/10.1093/bioinformatics/btv638openalex-snapshot
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
inferredcites →https://doi.org/10.1093/bioinformatics/btv697openalex-snapshot
MetaQUAST: evaluation of metagenome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btx106openalex-snapshot
Pseudoalignment for metagenomic read assignment
inferredcites →https://doi.org/10.1093/gbe/evp016openalex-snapshot
Deletional Bias across the Three Domains of Life
inferredcites →https://doi.org/10.1093/nar/gkh152openalex-snapshot
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences
inferredcites →https://doi.org/10.1093/nar/gku1063openalex-snapshot
Rfam 12.0: updates to the RNA families database
inferredcites →https://doi.org/10.1098/rstb.2014.0344openalex-snapshot
The unseen world: reflections on Leeuwenhoek (1677) ‘Concerning little animals’
inferredcites →https://doi.org/10.1101/150722openalex-snapshot
Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.186072.114openalex-snapshot
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
inferredcites →https://doi.org/10.1101/gr.213959.116openalex-snapshot
metaSPAdes: a new versatile metagenomic assembler
inferredcites →https://doi.org/10.1101/gr.229202openalex-snapshot
BLAT —The BLAST -Like Alignment Tool
inferredcites →https://doi.org/10.1126/sciadv.1602105openalex-snapshot
Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
inferredcites →https://doi.org/10.1126/science.1110591openalex-snapshot
Diversity of the Human Intestinal Microbial Flora
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1128/mbio.01948-15openalex-snapshot
Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing
inferredcites →https://doi.org/10.1186/1471-2105-11-538openalex-snapshot
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
inferredcites →https://doi.org/10.1186/2049-2618-2-26openalex-snapshot
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
inferredcites →https://doi.org/10.1186/gb-2005-6-8-229openalex-snapshot
Metagenomics for studying unculturable microorganisms: cutting the Gordian knot.
inferredcites →https://doi.org/10.1186/gb-2009-10-8-r85openalex-snapshot
Community-wide analysis of microbial genome sequence signatures
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1186/s12915-014-0066-4openalex-snapshot
Genomes in turmoil: Quantification of genome dynamics in prokaryote supergenomes
inferredcites →https://doi.org/10.1186/s13059-016-0997-xopenalex-snapshot
Mash: fast genome and metagenome distance estimation using MinHash
inferredcites →https://doi.org/10.1186/s40168-014-0066-1openalex-snapshot
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data
inferredcites →https://doi.org/10.1371/journal.pcbi.1003292openalex-snapshot
Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution
inferredcites →https://doi.org/10.1534/g3.114.011825openalex-snapshot
Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
inferredcites →https://doi.org/10.7717/peerj.1165openalex-snapshot
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
inferredcites →https://doi.org/10.7717/peerj.415openalex-snapshot
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
inferredcites →https://doi.org/10.7717/peerj.603openalex-snapshot
GroopM: an automated tool for the recovery of population genomes from related metagenomes
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Metagenomes Binning Using Proximity-Ligation Data
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ImputeCC Enhances Integrative Hi-C-Based Metagenomic Binning Through Constrained Random-Walk-Based Imputation
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Methods for Chromosome-Scale Haplotype Reconstruction
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Approaches for characterizing and tracking hospital-associated multidrug-resistant bacteria
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Hi-C deconvolution of a textile dye–related microbiome reveals novel taxonomic landscapes and links phenotypic potential to individual genomes
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Catch me if you can: capturing microbial community transformation by extracellular DNA using Hi-C sequencing
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Next Generation Sequencing Methods: Pushing the Boundaries
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Highly accurate long-read PacBio HiFi sequencing for microbiome and metagenomic applications
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Development of a field-deployable qPCR assay for real-time pest monitoring in algal cultivation systems
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.11.028openalex-snapshot
A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data
inferred← citeshttps://doi.org/10.1016/j.fbr.2021.03.003openalex-snapshot
Targeting Ascomycota genomes: what and how big?
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Monitoring antibiotic resistance genes in wastewater environments: The challenges of filling a gap in the One-Health cycle
inferred← citeshttps://doi.org/10.1016/j.mib.2020.02.002openalex-snapshot
Horizontal transfer of antibiotic resistance genes in the human gut microbiome
inferred← citeshttps://doi.org/10.1016/j.rsma.2024.103728openalex-snapshot
Recent toolset of metagenomics for taxonomical and functional annotation of marine associated viruses: A review
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Genetic basis for the biodegradation of a polyether-polyurethane-acrylic copolymer by a landfill microbial community inferred by metagenomic deconvolution analysis
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Prospects for multi-omics in the microbial ecology of water engineering
inferred← citeshttps://doi.org/10.1038/s41396-019-0446-4openalex-snapshot
Linking the resistome and plasmidome to the microbiome
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Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians
inferred← citeshttps://doi.org/10.1038/s41467-023-35945-yopenalex-snapshot
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data
inferred← citeshttps://doi.org/10.1038/s41467-023-41209-6openalex-snapshot
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
inferred← citeshttps://doi.org/10.1038/s41467-023-42967-zopenalex-snapshot
Hi-C metagenome sequencing reveals soil phage–host interactions
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Tracking microbial evolution in the human gut using Hi-C reveals extensive horizontal gene transfer, persistence and adaptation
inferred← citeshttps://doi.org/10.1038/s41564-023-01347-5openalex-snapshot
Viruses interact with hosts that span distantly related microbial domains in dense hydrothermal mats
inferred← citeshttps://doi.org/10.1038/s41564-025-02108-2openalex-snapshot
Phages with a broad host range are common across ecosystems
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Gut virome dynamics: from commensal to critical player in health and disease
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Sequencing-based methods and resources to study antimicrobial resistance
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Sequencing-based analysis of microbiomes
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Examining horizontal gene transfer in microbial communities
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Hybrid metagenomic assembly enables high-resolution analysis of resistance determinants and mobile elements in human microbiomes
inferred← citeshttps://doi.org/10.1038/s41587-021-01130-zopenalex-snapshot
Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities
inferred← citeshttps://doi.org/10.1038/s41597-024-03875-zopenalex-snapshot
Genomic profiling of Antarctic geothermal microbiomes using long-read, Hi-C, and single-cell techniques
inferred← citeshttps://doi.org/10.1038/s41597-025-04651-3openalex-snapshot
Shotgun and Hi-C Sequencing Datasets for Binning Wheat Rhizosphere Microbiome
inferred← citeshttps://doi.org/10.1038/s41598-024-63951-7openalex-snapshot
Exploration of mobile genetic elements in the ruminal microbiome of Nellore cattle
inferred← citeshttps://doi.org/10.1080/19490976.2025.2559019openalex-snapshot
Use of proximity ligation shotgun metagenomics to investigate the dynamics of plasmids and bacteriophages in the gut microbiome following fecal microbiota transplantation
inferred← citeshttps://doi.org/10.1089/cmb.2021.0439openalex-snapshot
Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression
inferred← citeshttps://doi.org/10.1089/cmb.2024.0663openalex-snapshot
Imputing Metagenomic Hi-C Contacts Facilitates the Integrative Contig Binning Through Constrained Random Walk with Restart
inferred← citeshttps://doi.org/10.1093/bfgp/elz026openalex-snapshot
Genome reconstruction and haplotype phasing using chromosome conformation capture methodologies
inferred← citeshttps://doi.org/10.1093/bib/bbad162openalex-snapshot
A survey on computational strategies for genome-resolved gut metagenomics
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac295openalex-snapshot
HiFine: integrating Hi-C-based and shotgun-based methods to refine binning of metagenomic contigs
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Patterns of genomic variation reveal a single evolutionary origin of the wild allotetraploid Mimulus sookensis
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Experimental approaches to tracking mobile genetic elements in microbial communities
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Detection of rare plasmid hosts using a targeted hi-C approach
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Host-specific viral predation network on coral reefs
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MetaHiCNet: a web server for normalizing and visualizing microbial Hi-C interaction networks
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Noise reduction strategies in metagenomic chromosome confirmation capture to link antibiotic resistance genes to microbial hosts
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Phages - bacteria interactions network of the healthy human gut
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Gene flux and acid-imposed selection are the main drivers of antimicrobial resistance in broiler chicks infected with Salmonella enterica serovar Heidelberg
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Generation of lineage-resolved complete metagenome-assembled genomes by precision phasing
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Accurate viral genome reconstruction and host assignment with proximity-ligation sequencing
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Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians
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Catch me if you can: Capturing extracellular DNA transformation in mixed cultures via Hi-C sequencing
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Hi-C assembled genomes of estuarine populations reveal virus-microbe associations and a broad interaction range of a cyanophage
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Highly accurate metagenome-assembled genomes from human gut microbiota using long-read assembly, binning, and consolidation methods
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METAHICT enables comprehensive genome-resolved microbiome analysis with metagenomic Hi-C
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Nanopore sequencing enables high-resolution analysis of resistance determinants and mobile elements in the human gut microbiome
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Proximity‐Ligation Metagenomic Sequence Analysis Reveals That the Antibiotic Resistome Makes Significant Transitions During Municipal Wastewater Treatment
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Litter Commensal Bacteria Can Limit the Horizontal Gene Transfer of Antimicrobial Resistance to Salmonella in Chickens
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Hi-C-resolved metagenomics reveals host range variation among mobile genetic elements within the European honey bee
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Draft Genome Sequence of Methanobacterium paludis IBT-C12, Recovered from Sediments of the Apatlaco River, Mexico
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Metagenome-assembled genome sequence of an uncultured Roseburia sp. generated from mouse fecal DNA from the International Space Station
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The draft genome sequence of a predatory Oligoflexus bacterium infecting a eukaryotic alga
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Metagenomic Hi-C of a Healthy Human Fecal Microbiome Transplant Donor
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Bacteriophage replication strategies are associated with organic matter energy content on coral reefs
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Using Cartesian Doubt To Build a Sequencing-Based View of Microbiology
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Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg
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Using genomics to explore the epidemiology of vancomycin resistance in a sewage system
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bin3C: exploiting Hi-C sequencing data to accurately resolve metagenome-assembled genomes
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Computational methods for chromosome-scale haplotype reconstruction
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Draft genome sequence of “Candidatus Afipia apatlaquensis” sp. nov., IBT-C3, a potential strain for decolorization of textile dyes
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Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria
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Understanding the transfer and persistence of antimicrobial resistance in aquaculture using a model teleost gut system
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Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
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qc3C: Reference-free quality control for Hi-C sequencing data
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A macroecological perspective on genetic diversity in the human gut microbiome
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Characterization of comammox bacteria in wastewater secondary treatment systems
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Recovery of high-quality genomes from the fecal microbiome of the domestic cat (Felis catus) using Hi-C proximity ligation
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3040647/v1openalex-snapshot
Productive viral infections in oligotrophic marine waters
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Identifying Mobile Genetic Elements in the Ruminal Microbiome of Nellore Cattle: An Initial Investigation
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Development of novel tools for monitoring antimicrobial resistance in complex microbial communities and their application to improving our stewardship of antimicrobials in livestock
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MetaTOR: A Computational Pipeline to Recover High-Quality Metagenomic Bins From Mammalian Gut Proximity-Ligation (meta3C) Libraries
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Addressing Global Ruminant Agricultural Challenges Through Understanding the Rumen Microbiome: Past, Present, and Future
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inferred← citeshttps://doi.org/10.3390/genes10030220openalex-snapshot
Applying Genome-Resolved Metagenomics to Deconvolute the Halophilic Microbiome
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Hi-C Metagenome Deconvolution of Double-Crested Cormorant (Nannopterum auritum) Fecal Samples Demonstrates Feasibility of Linking Microbial Genomes, AMR Genes, and Mobile Elements in Avian Microbiomes
inferred← citeshttps://doi.org/10.3390/microorganisms14102153openalex-snapshot
Resolving Host-Associated Antimicrobial Resistance in Municipal Wastewater Using Hi-C Metagenomics
inferred← citeshttps://doi.org/10.3390/tropicalmed11060153openalex-snapshot
Reducing Antibiotic Dependence in Poultry: The Potential of Phytochemicals as Antibiotic Alternatives Against Bacterial Foodborne Pathogens
inferred← citeshttps://doi.org/10.34133/csbr.0003openalex-snapshot
Precision of Hi-C-Based Metagenome-Assembled Genome Reconstruction across Binning Pipelines
inferred← citeshttps://doi.org/10.70675/69764e0dzf30ez41f5zb9a8z8e784eda5453openalex-snapshot
Using statistical profiling to decipher hidden chromatin contacts resulting from repeated sequences
inferred← citeshttps://doi.org/10.70675/a5e4bd2az13bez477cz92aez8c90736cad60openalex-snapshot
Genome-wide effects of T4 phage Ndd protein expression on the Escherichia coli nucleoid
inferred← citeshttps://doi.org/10.70675/a91a798czcccbz4ccfzb7f8zc2f5d6e00d20openalex-snapshot
Investigating chromosome dynamics through Hi-C assembly
inferred← citeshttps://doi.org/10.7554/elife.60608openalex-snapshot
MetaHiC phage-bacteria infection network reveals active cycling phages of the healthy human gut
inferred← citeshttps://doi.org/10.7554/elife.81196openalex-snapshot
Mobilome-driven segregation of the resistome in biological wastewater treatment
inferred← citeshttps://doi.org/10.7717/peerj.16129openalex-snapshot
Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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