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Identification of a novel interspecific hybrid yeast from a metagenomic spontaneously inoculated beer sample using Hi-C
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Outgoing claims: the papers this work cites, builds on, or argues with.
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Co-existence of two types of chromosome in the bottom fermenting yeast,Saccharomyces pastorianus
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PHYLIP (Phylogeny Inference Package)
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MICROBIOLOGICAL ASPECTS OF SPONTANEOUS WORT FERMENTATION IN THE PRODUCTION OF LAMBIC AND GUEUZE
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WORT ENTEROBACTERIA AND OTHER MICROBIAL POPULATIONS INVOLVED DURING THE FIRST MONTH OF LAMBIC FERMENTATION
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MICROBIOLOGICAL ASPECTS OF A MIXED YEAST-BACTERIAL FERMENTATION IN THE PRODUCTION OF A SPECIAL BELGIAN ACIDIC ALE
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Saccharomyces pastorianus: genomic insights inspiring innovation for industry
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Yeasts found in vineyards and wineries
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The Analysis of Natural Microbial Populations by Ribosomal RNA Sequences
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Yeast communities in a natural tequila fermentation
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Adaptation of yeasts Saccharomyces cerevisiae and Brettanomyces bruxellensis to winemaking conditions: a comparative study of stress genes expression
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Designing and creating Saccharomyces interspecific hybrids for improved, industry relevant, phenotypes
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Improved cider fermentation performance and quality with newly generated Saccharomyces cerevisiae × Saccharomyces eubayanus hybrids
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Phylogeny of the ascomycetous yeasts and the renaming of Pichia anomala to Wickerhamomyces anomalus
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Identification of yeasts during alcoholic fermentation of tchapalo, a traditional sorghum beer from Côte d’Ivoire
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Origin and evolution of animal hybrid species
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Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts
inferredcites →https://doi.org/10.1016/j.fm.2008.04.015openalex-snapshot
Rational selection of non-Saccharomyces wine yeasts for mixed starters based on ester formation and enological traits
inferredcites →https://doi.org/10.1016/j.fm.2014.10.004openalex-snapshot
Microbiota and metabolites of aged bottled gueuze beers converge to the same composition
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Primary souring: A novel bacteria-free method for sour beer production
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Influence of sequential yeast mixtures on wine fermentation
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Selection, growth, and chemo-sensory evaluation of flocculent starter culture strains of Saccharomyces cerevisiae in the large-scale production of traditional Brazilian cachaça
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The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties
inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2015.04.005openalex-snapshot
Brettanomyces yeasts — From spoilage organisms to valuable contributors to industrial fermentations
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Single cell genomics: an individual look at microbes
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Microbial phylogeny and diversity: Small subunit ribosomal RNA sequence analysis and beyond
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Basic Local Alignment Search Tool
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Studies on acetate ester production by non-Saccharomyces wine yeasts
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Chromosomal Structures of Bottom Fermenting Yeasts
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Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges
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Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
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Climate change and evolutionary adaptation
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Structure, function and diversity of the healthy human microbiome
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Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
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High-throughput genome scaffolding from in vivo DNA interaction frequency
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Invasive hybridization in a threatened species is accelerated by climate change
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Parallel evolution of the make–accumulate–consume strategy in Saccharomyces and Dekkera yeasts
inferredcites →https://doi.org/10.1038/nrg3454openalex-snapshot
Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
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The Mystery of Lambic Beer
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Regional microbial signatures positively correlate with differential wine phenotypes: evidence for a microbial aspect to terroir
inferredcites →https://doi.org/10.1073/pnas.0704662104openalex-snapshot
Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
inferredcites →https://doi.org/10.1073/pnas.1402564111openalex-snapshot
Tackling soil diversity with the assembly of large, complex metagenomes
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Social wasps are a Saccharomyces mating nest
inferredcites →https://doi.org/10.1073/pnas.1603941113openalex-snapshot
Comparative genomics of biotechnologically important yeasts
inferredcites →https://doi.org/10.1073/pnas.82.20.6955openalex-snapshot
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/bts174openalex-snapshot
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
inferredcites →https://doi.org/10.1093/dnares/dsp003openalex-snapshot
Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid
inferredcites →https://doi.org/10.1093/gbe/evu082openalex-snapshot
Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies
inferredcites →https://doi.org/10.1093/molbev/msv168openalex-snapshot
The Genome Sequence ofSaccharomyces eubayanusand the Domestication of Lager-Brewing Yeasts
inferredcites →https://doi.org/10.1093/nar/gkh379openalex-snapshot
AUGUSTUS: a web server for gene finding in eukaryotes
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AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
inferredcites →https://doi.org/10.1093/nar/gkr1204openalex-snapshot
Unsupervised discovery of microbial population structure within metagenomes using nucleotide base composition
inferredcites →https://doi.org/10.1098/rspb.2012.0434openalex-snapshot
Polyploidy in fungi: evolution after whole-genome duplication
inferredcites →https://doi.org/10.1099/ijs.0.057315-0openalex-snapshot
Acetobacter lambici sp. nov., isolated from fermenting lambic beer
inferredcites →https://doi.org/10.1099/ijs.0.059311-0openalex-snapshot
Gluconobacter cerevisiae sp. nov., isolated from the brewery environment
inferredcites →https://doi.org/10.1101/gr.076075.108openalex-snapshot
Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus
inferredcites →https://doi.org/10.1101/gr.185538.114openalex-snapshot
The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen
inferredcites →https://doi.org/10.1111/1567-1364.12175openalex-snapshot
Effects of sequential mixed cultures of Wickerhamomyces anomalus and Saccharomyces cerevisiae on apple cider fermentation
inferredcites →https://doi.org/10.1111/1751-7915.12337openalex-snapshot
Dynamic changes in microbiota and mycobiota during spontaneous ‘ V ino S anto T rentino’ fermentation
inferredcites →https://doi.org/10.1111/1751-7915.12717openalex-snapshot
Performance of non‐conventional yeasts in co‐culture with brewers’ yeast for steering ethanol and aroma production
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Random amplified polymorphic DNA-PCR based cloning of markers to identify the beer-spoilage strains of Lactobacillus brevis, Pediococcus damnosus, Lactobacillus collinoides and Lactobacillus coryniformis
inferredcites →https://doi.org/10.1111/j.1420-9101.2012.02599.xopenalex-snapshot
Hybridization and speciation
inferredcites →https://doi.org/10.1111/j.1567-1364.2006.00126.xopenalex-snapshot
Natural hybrids fromSaccharomyces cerevisiae,Saccharomyces bayanusandSaccharomyces kudriavzeviiin wine fermentations
inferredcites →https://doi.org/10.1111/j.1567-1364.2008.00419.xopenalex-snapshot
Phylogenetic relationships among species of Pichia, Issatchenkia and Williopsis determined from multigene sequence analysis, and the proposal of Barnettozyma gen. nov., Lindnera gen. nov. and Wickerhamomyces gen. nov.
inferredcites →https://doi.org/10.1111/j.1567-1364.2009.00520.xopenalex-snapshot
Yeast diversity of Ghanaian cocoa bean heap fermentations
inferredcites →https://doi.org/10.1111/jam.12547openalex-snapshot
Selection and characterization of a Patagonian Pichia kudriavzevii for wine deacidification
inferredcites →https://doi.org/10.1111/nph.14004openalex-snapshot
Hybridization and hybrid speciation under global change
inferredcites →https://doi.org/10.1126/sciadv.1602105openalex-snapshot
Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
inferredcites →https://doi.org/10.1126/science.1093857openalex-snapshot
Environmental Genome Shotgun Sequencing of the Sargasso Sea
inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot
Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
inferredcites →https://doi.org/10.1126/science.1212665openalex-snapshot
Untangling Genomes from Metagenomes: Revealing an Uncultured Class of Marine Euryarchaeota
inferredcites →https://doi.org/10.1128/aem.01867-07openalex-snapshot
Molecular Characterization of New Natural Hybrids of Saccharomyces cerevisiae and S . kudriavzevii in Brewing
inferredcites →https://doi.org/10.1128/ec.00115-09openalex-snapshot
Complex Nature of the Genome in a Wine Spoilage Yeast, Dekkera bruxellensis
inferredcites →https://doi.org/10.1128/ec.00229-12openalex-snapshot
Genome Sequence of Pichia kudriavzevii M12, a Potential Producer of Bioethanol and Phytase
inferredcites →https://doi.org/10.1128/ec.00338-06openalex-snapshot
Genome Survey Sequencing of the Wine Spoilage YeastDekkera (Brettanomyces) bruxellensis
inferredcites →https://doi.org/10.1128/mmbr.68.4.669-685.2004openalex-snapshot
Metagenomics: Application of Genomics to Uncultured Microorganisms
inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.593openalex-snapshot
The Role of Hybridization and Introgression in the Diversification of Animals
inferredcites →https://doi.org/10.1186/2049-2618-1-22openalex-snapshot
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
inferredcites →https://doi.org/10.1186/gb-2014-15-3-r46openalex-snapshot
Kraken: ultrafast metagenomic sequence classification using exact alignments
inferredcites →https://doi.org/10.1186/s12864-015-1438-zopenalex-snapshot
Comparative genome analysis of Pediococcus damnosus LMG 28219, a strain well-adapted to the beer environment
inferredcites →https://doi.org/10.1371/journal.pbio.1002221openalex-snapshot
Origin of the Yeast Whole-Genome Duplication
inferredcites →https://doi.org/10.1371/journal.pcbi.1003292openalex-snapshot
Reconstructing the Genomic Content of Microbiome Taxa through Shotgun Metagenomic Deconvolution
inferredcites →https://doi.org/10.1371/journal.pgen.1004161openalex-snapshot
Insights into the Dekkera bruxellensis Genomic Landscape: Comparative Genomics Reveals Variations in Ploidy and Nutrient Utilisation Potential amongst Wine Isolates
inferredcites →https://doi.org/10.1371/journal.pone.0035507openalex-snapshot
Brewhouse-Resident Microbiota Are Responsible for Multi-Stage Fermentation of American Coolship Ale
inferredcites →https://doi.org/10.1371/journal.pone.0095384openalex-snapshot
The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer
inferredcites →https://doi.org/10.1534/g3.114.011825openalex-snapshot
Species-Level Deconvolution of Metagenome Assemblies with Hi-C–Based Contact Probability Maps
inferredcites →https://doi.org/10.3389/fmicb.2016.00663openalex-snapshot
Microbial Terroir in Chilean Valleys: Diversity of Non-conventional Yeast
inferredcites →https://doi.org/10.5344/ajev.1966.17.2.82openalex-snapshot
Pichia Membranaefaciens, A Yeast Causing Film Formation and Off-Flavor in Table Wine
inferredcites →https://doi.org/10.7554/elife.03318openalex-snapshot
Metagenomic chromosome conformation capture (meta3C) unveils the diversity of chromosome organization in microorganisms
inferredcites →https://doi.org/10.7717/peerj.415openalex-snapshot
Strain- and plasmid-level deconvolution of a synthetic metagenome by sequencing proximity ligation products
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.fm.2024.104520openalex-snapshot
Hi-C metagenomics facilitate comparative genome analysis of bacteria and yeast from spontaneous beer and cider
inferred← citeshttps://doi.org/10.1101/155358openalex-snapshot
Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants
inferred← citeshttps://doi.org/10.1101/198713openalex-snapshot
Hi-C deconvolution of a human gut microbiome yields high-quality draft genomes and reveals plasmid-genome interactions
inferred← citeshttps://doi.org/10.12688/f1000research.12564.1openalex-snapshot
BeerDeCoded: the open beer metagenome project
inferred← citeshttps://doi.org/10.58985/jafsb.2026.v04i01.87openalex-snapshot
Predicting the weight of bread pastry fermented with yeast strains and their hybrid genotypes
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